Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 TBC1D32-201ENST00000275159 4431 ntAPPRIS ALT2 TSL 5 BASIC7.02□□□□□ -1.29
LIG3P49916 AC021078.1-201ENST00000499521 8636 ntTSL 1 (best) BASIC7.02□□□□□ -1.29
LIG3P49916 AC119674.1-204ENST00000641348 1343 ntBASIC7.01□□□□□ -1.29
LIG3P49916 PIGN-220ENST00000638167 4195 ntTSL 5 BASIC7.01□□□□□ -1.29
LIG3P49916 PSG2-202ENST00000406487 1538 ntAPPRIS P1 TSL 1 (best) BASIC7.01□□□□□ -1.29
LIG3P49916 GPR89A-203ENST00000462900 1527 ntTSL 2 BASIC7.01□□□□□ -1.29
LIG3P49916 ZC3H8-208ENST00000615791 1527 ntAPPRIS ALT2 TSL 5 BASIC7.01□□□□□ -1.29
LIG3P49916 CASP10-208ENST00000448480 1603 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
LIG3P49916 HSPD1P1-201ENST00000503199 1726 ntBASIC7.01□□□□□ -1.29
LIG3P49916 LINC00616-205ENST00000514600 2017 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
LIG3P49916 AP002800.1-201ENST00000624982 2225 ntBASIC7.01□□□□□ -1.29
LIG3P49916 LARP1B-203ENST00000432347 2707 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
LIG3P49916 MPDZ-202ENST00000319217 7722 ntAPPRIS ALT2 TSL 5 BASIC7.01□□□□□ -1.29
LIG3P49916 SLC26A3-201ENST00000340010 2863 ntAPPRIS P1 TSL 1 (best) BASIC7.01□□□□□ -1.29
LIG3P49916 AHNAK2-201ENST00000333244 18254 ntAPPRIS P1 TSL 5 BASIC7.01□□□□□ -1.29
LIG3P49916 AL355852.1-201ENST00000454081 1771 ntBASIC7.01□□□□□ -1.29
LIG3P49916 SYTL4-203ENST00000372981 4847 ntTSL 2 BASIC7.01□□□□□ -1.29
LIG3P49916 DLG2-207ENST00000398309 7890 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
LIG3P49916 AC124017.1-201ENST00000508112 1594 ntTSL 5 BASIC7.01□□□□□ -1.29
LIG3P49916 YWHAZ-219ENST00000522542 1394 ntTSL 2 BASIC7.01□□□□□ -1.29
LIG3P49916 AL391994.1-201ENST00000254724 282 ntBASIC7.01□□□□□ -1.29
LIG3P49916 DFNB59-201ENST00000375129 1202 ntAPPRIS P1 TSL 1 (best) BASIC7.01□□□□□ -1.29
LIG3P49916 TRAV14DV4-201ENST00000390440 425 ntAPPRIS P1 BASIC7.01□□□□□ -1.29
LIG3P49916 AL359715.1-201ENST00000404330 555 ntBASIC7.01□□□□□ -1.29
LIG3P49916 RNA5SP251-201ENST00000410614 137 ntBASIC7.01□□□□□ -1.29
LIG3P49916 AC013404.1-201ENST00000413068 249 ntBASIC7.01□□□□□ -1.29
LIG3P49916 GTF2IP23-201ENST00000423746 351 ntBASIC7.01□□□□□ -1.29
LIG3P49916 AC007365.2-201ENST00000428806 458 ntBASIC7.01□□□□□ -1.29
LIG3P49916 USP9YP31-201ENST00000431405 881 ntBASIC7.01□□□□□ -1.29
LIG3P49916 AC002378.1-201ENST00000432360 298 ntTSL 3 BASIC7.01□□□□□ -1.29
LIG3P49916 ATP5F1P1-201ENST00000433775 569 ntBASIC7.01□□□□□ -1.29
LIG3P49916 AC073062.1-201ENST00000434509 455 ntTSL 5 BASIC7.01□□□□□ -1.29
LIG3P49916 AC023481.1-201ENST00000435368 938 ntTSL 3 BASIC7.01□□□□□ -1.29
LIG3P49916 SLC6A13-202ENST00000436453 1101 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
LIG3P49916 AL353093.1-201ENST00000441292 436 ntBASIC7.01□□□□□ -1.29
LIG3P49916 AL138921.1-201ENST00000444359 846 ntTSL 5 BASIC7.01□□□□□ -1.29
LIG3P49916 AL357514.1-201ENST00000446322 488 ntTSL 3 BASIC7.01□□□□□ -1.29
LIG3P49916 AL929288.2-201ENST00000446368 407 ntBASIC7.01□□□□□ -1.29
LIG3P49916 AC093166.3-201ENST00000448785 303 ntBASIC7.01□□□□□ -1.29
LIG3P49916 AL157896.1-201ENST00000451617 790 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
LIG3P49916 AL391422.2-202ENST00000454396 347 ntTSL 5 BASIC7.01□□□□□ -1.29
LIG3P49916 CEACAMP11-201ENST00000455211 583 ntBASIC7.01□□□□□ -1.29
LIG3P49916 AL035443.1-201ENST00000456631 304 ntTSL 3 BASIC7.01□□□□□ -1.29
LIG3P49916 GYG1P1-201ENST00000460864 698 ntBASIC7.01□□□□□ -1.29
LIG3P49916 AC022730.1-201ENST00000473114 568 ntBASIC7.01□□□□□ -1.29
LIG3P49916 RPL7P16-201ENST00000479738 738 ntBASIC7.01□□□□□ -1.29
LIG3P49916 OR11I1P-201ENST00000486033 954 ntBASIC7.01□□□□□ -1.29
LIG3P49916 PFN1P8-201ENST00000497012 543 ntBASIC7.01□□□□□ -1.29
LIG3P49916 AC016687.2-201ENST00000504795 541 ntTSL 5 BASIC7.01□□□□□ -1.29
LIG3P49916 AC110751.1-201ENST00000511916 462 ntTSL 3 BASIC7.01□□□□□ -1.29
LIG3P49916 AC098487.1-203ENST00000512915 546 ntTSL 5 BASIC7.01□□□□□ -1.29
LIG3P49916 AC008837.2-201ENST00000513076 418 ntBASIC7.01□□□□□ -1.29
LIG3P49916 AC110775.1-201ENST00000513721 462 ntBASIC7.01□□□□□ -1.29
LIG3P49916 AC093668.1-201ENST00000514917 911 ntAPPRIS P1 TSL 3 BASIC7.01□□□□□ -1.29
LIG3P49916 IGHV3-63-201ENST00000518422 341 ntBASIC7.01□□□□□ -1.29
LIG3P49916 AC022639.1-204ENST00000520365 569 ntTSL 4 BASIC7.01□□□□□ -1.29
LIG3P49916 AP001267.3-202ENST00000525992 448 ntTSL 3 BASIC7.01□□□□□ -1.29
LIG3P49916 AL355075.1-201ENST00000528210 468 ntTSL 2 BASIC7.01□□□□□ -1.29
LIG3P49916 SNHG1-211ENST00000539921 1071 ntTSL 2 BASIC7.01□□□□□ -1.29
LIG3P49916 AC025260.1-201ENST00000548858 430 ntBASIC7.01□□□□□ -1.29
LIG3P49916 LINC01146-207ENST00000557339 397 ntTSL 3 BASIC7.01□□□□□ -1.29
LIG3P49916 NR2F2-AS1-211ENST00000561402 589 ntTSL 3 BASIC7.01□□□□□ -1.29
LIG3P49916 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC7.01□□□□□ -1.29
LIG3P49916 AC015911.2-201ENST00000585536 396 ntTSL 3 BASIC7.01□□□□□ -1.29
LIG3P49916 AC008770.4-201ENST00000586394 468 ntTSL 3 BASIC7.01□□□□□ -1.29
LIG3P49916 AC073648.5-201ENST00000603502 305 ntBASIC7.01□□□□□ -1.29
LIG3P49916 AC004890.3-201ENST00000605566 1095 ntBASIC7.01□□□□□ -1.29
LIG3P49916 C5orf63-207ENST00000606937 607 ntTSL 2 BASIC7.01□□□□□ -1.29
LIG3P49916 AL451074.6-201ENST00000608512 729 ntBASIC7.01□□□□□ -1.29
LIG3P49916 AC092794.1-201ENST00000612734 582 ntBASIC7.01□□□□□ -1.29
LIG3P49916 AC009878.1-201ENST00000621819 340 ntBASIC7.01□□□□□ -1.29
LIG3P49916 AC098617.1-218ENST00000628836 624 ntTSL 5 BASIC7.01□□□□□ -1.29
LIG3P49916 AC099329.1-203ENST00000629885 767 ntTSL 5 BASIC7.01□□□□□ -1.29
LIG3P49916 AC092192.1-201ENST00000633154 1018 ntBASIC7.01□□□□□ -1.29
LIG3P49916 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC7.01□□□□□ -1.29
LIG3P49916 THAP6-202ENST00000380837 3423 ntAPPRIS ALT2 TSL 1 (best) BASIC7.01□□□□□ -1.29
LIG3P49916 CFAP57-204ENST00000528956 3037 ntTSL 2 BASIC7.01□□□□□ -1.29
LIG3P49916 AC109811.1-201ENST00000512833 2807 ntTSL 1 (best) BASIC7.01□□□□□ -1.29
LIG3P49916 RGSL1-201ENST00000294854 3696 ntAPPRIS P1 TSL 1 (best) BASIC7.01□□□□□ -1.29
LIG3P49916 FSTL5-201ENST00000306100 4831 ntAPPRIS P3 TSL 1 (best) BASIC7.01□□□□□ -1.29
LIG3P49916 FAM19A1-201ENST00000478136 2014 ntAPPRIS P1 TSL 1 (best) BASIC7.01□□□□□ -1.29
LIG3P49916 PAIP1-202ENST00000338972 1814 ntAPPRIS P3 TSL 5 BASIC7.01□□□□□ -1.29
LIG3P49916 DTHD1-206ENST00000639862 3819 ntTSL 5 BASIC7.01□□□□□ -1.29
LIG3P49916 AC073429.2-201ENST00000569694 1444 ntBASIC7.01□□□□□ -1.29
LIG3P49916 FOPNL-201ENST00000255759 2275 ntAPPRIS P1 TSL 1 (best) BASIC7.01□□□□□ -1.29
LIG3P49916 RAPGEF4-204ENST00000409036 3975 ntTSL 5 BASIC7.01□□□□□ -1.29
LIG3P49916 LNX2-201ENST00000316334 4627 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
LIG3P49916 BDNF-211ENST00000439476 4532 ntAPPRIS P1 TSL 1 (best) BASIC7□□□□□ -1.29
LIG3P49916 FBLN5-205ENST00000556154 1875 ntTSL 1 (best) BASIC7□□□□□ -1.29
LIG3P49916 EMSY-201ENST00000334736 5508 ntAPPRIS P3 TSL 5 BASIC7□□□□□ -1.29
LIG3P49916 LGALSL-202ENST00000409537 3298 ntTSL 5 BASIC7□□□□□ -1.29
LIG3P49916 LINC01222-201ENST00000427439 1785 ntTSL 2 BASIC7□□□□□ -1.29
LIG3P49916 AL078595.2-201ENST00000605309 1780 ntBASIC7□□□□□ -1.29
LIG3P49916 AC006511.3-201ENST00000624929 1783 ntBASIC7□□□□□ -1.29
LIG3P49916 NLRP11-204ENST00000592953 3077 ntTSL 1 (best) BASIC7□□□□□ -1.29
LIG3P49916 INHBA-AS1-203ENST00000422822 2312 ntTSL 2 BASIC7□□□□□ -1.29
LIG3P49916 PARP4P1-201ENST00000435945 2337 ntBASIC7□□□□□ -1.29
LIG3P49916 NUMB-203ENST00000359560 3309 ntAPPRIS P3 TSL 5 BASIC7□□□□□ -1.29
LIG3P49916 AC015799.1-201ENST00000622996 3122 ntBASIC7□□□□□ -1.29
LIG3P49916 LIMA1-202ENST00000394943 3669 ntAPPRIS ALT2 TSL 1 (best) BASIC7□□□□□ -1.29
Retrieved 100 of 98,524 protein–RNA pairs in 85 ms