Protein–RNA interactions for Protein: Q96JB5

CDK5RAP3, CDK5 regulatory subunit-associated protein 3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3Q96JB5 SAMD9L-204ENST00000437805 5757 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
CDK5RAP3Q96JB5 IGF1-202ENST00000337514 7359 ntAPPRIS P3 TSL 1 (best) BASIC6.55□□□□□ -1.36
CDK5RAP3Q96JB5 OR52N4-201ENST00000317254 1037 ntAPPRIS P1 BASIC6.55□□□□□ -1.36
CDK5RAP3Q96JB5 SUGT1P2-201ENST00000379452 992 ntBASIC6.55□□□□□ -1.36
CDK5RAP3Q96JB5 RNU6-1263P-201ENST00000384601 106 ntBASIC6.55□□□□□ -1.36
CDK5RAP3Q96JB5 U3.23-201ENST00000391132 200 ntBASIC6.55□□□□□ -1.36
CDK5RAP3Q96JB5 ZNF365-203ENST00000395249 433 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
CDK5RAP3Q96JB5 RPL11P3-201ENST00000395256 523 ntBASIC6.55□□□□□ -1.36
CDK5RAP3Q96JB5 OR7E156P-201ENST00000400303 464 ntBASIC6.55□□□□□ -1.36
CDK5RAP3Q96JB5 MTATP6P31-201ENST00000406985 692 ntBASIC6.55□□□□□ -1.36
CDK5RAP3Q96JB5 FO393401.1-203ENST00000416260 486 ntTSL 5 BASIC6.55□□□□□ -1.36
CDK5RAP3Q96JB5 AC090505.2-201ENST00000427064 464 ntTSL 3 BASIC6.55□□□□□ -1.36
CDK5RAP3Q96JB5 MGAT2P2-201ENST00000427194 797 ntBASIC6.55□□□□□ -1.36
CDK5RAP3Q96JB5 AC115283.1-201ENST00000427353 400 ntBASIC6.55□□□□□ -1.36
CDK5RAP3Q96JB5 CRIP1P1-201ENST00000427567 185 ntBASIC6.55□□□□□ -1.36
CDK5RAP3Q96JB5 LINC00383-201ENST00000433664 817 ntTSL 3 BASIC6.55□□□□□ -1.36
CDK5RAP3Q96JB5 AC023481.1-201ENST00000435368 938 ntTSL 3 BASIC6.55□□□□□ -1.36
CDK5RAP3Q96JB5 AL137186.1-201ENST00000440436 480 ntTSL 3 BASIC6.55□□□□□ -1.36
CDK5RAP3Q96JB5 EIF5AP4-201ENST00000441206 465 ntBASIC6.55□□□□□ -1.36
CDK5RAP3Q96JB5 MEOX2-AS1-201ENST00000442176 697 ntTSL 3 BASIC6.55□□□□□ -1.36
CDK5RAP3Q96JB5 RBMY2TP-201ENST00000451162 947 ntBASIC6.55□□□□□ -1.36
CDK5RAP3Q96JB5 LINC02339-201ENST00000472649 752 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
CDK5RAP3Q96JB5 Y_RNA.667-201ENST00000516212 107 ntBASIC6.55□□□□□ -1.36
CDK5RAP3Q96JB5 AC022826.1-201ENST00000519383 805 ntBASIC6.55□□□□□ -1.36
CDK5RAP3Q96JB5 SKP1-208ENST00000521216 899 ntAPPRIS ALT1 TSL 5 BASIC6.55□□□□□ -1.36
CDK5RAP3Q96JB5 C1DP5-201ENST00000525775 383 ntBASIC6.55□□□□□ -1.36
CDK5RAP3Q96JB5 SYNE2-210ENST00000553455 674 ntTSL 2 BASIC6.55□□□□□ -1.36
CDK5RAP3Q96JB5 RNASE9-204ENST00000553541 1136 ntAPPRIS P3 TSL 1 (best) BASIC6.55□□□□□ -1.36
CDK5RAP3Q96JB5 LINC02345-203ENST00000558897 405 ntTSL 3 BASIC6.55□□□□□ -1.36
CDK5RAP3Q96JB5 AC136944.1-201ENST00000567464 560 ntTSL 5 BASIC6.55□□□□□ -1.36
CDK5RAP3Q96JB5 AC090826.1-203ENST00000569235 490 ntBASIC6.55□□□□□ -1.36
CDK5RAP3Q96JB5 LINC00556-201ENST00000569603 412 ntBASIC6.55□□□□□ -1.36
CDK5RAP3Q96JB5 ZNF208-204ENST00000599916 740 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
CDK5RAP3Q96JB5 AL513327.3-201ENST00000602618 469 ntBASIC6.55□□□□□ -1.36
CDK5RAP3Q96JB5 AL138960.1-201ENST00000613838 513 ntBASIC6.55□□□□□ -1.36
CDK5RAP3Q96JB5 RDM1-226ENST00000619828 687 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
CDK5RAP3Q96JB5 AC134980.1-208ENST00000640228 535 ntTSL 5 BASIC6.55□□□□□ -1.36
CDK5RAP3Q96JB5 NSD1-204ENST00000439151 12892 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
CDK5RAP3Q96JB5 ZNF480-204ENST00000490272 2238 ntTSL 2 BASIC6.55□□□□□ -1.36
CDK5RAP3Q96JB5 MGP-203ENST00000539261 1405 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
CDK5RAP3Q96JB5 AC109811.1-201ENST00000512833 2807 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
CDK5RAP3Q96JB5 ZNF780A-205ENST00000594395 2044 ntAPPRIS ALT2 TSL 2 BASIC6.55□□□□□ -1.36
CDK5RAP3Q96JB5 MOCS2-201ENST00000361377 3568 ntTSL 4 BASIC6.55□□□□□ -1.36
CDK5RAP3Q96JB5 CPS1-IT1-201ENST00000628368 2306 ntBASIC6.55□□□□□ -1.36
CDK5RAP3Q96JB5 MFSD8-219ENST00000641228 2559 ntBASIC6.55□□□□□ -1.36
CDK5RAP3Q96JB5 TDRD5-202ENST00000367614 3632 ntAPPRIS P3 TSL 2 BASIC6.55□□□□□ -1.36
CDK5RAP3Q96JB5 ZEB1-201ENST00000320985 5423 ntAPPRIS P3 TSL 1 (best) BASIC6.55□□□□□ -1.36
CDK5RAP3Q96JB5 ZNF721-201ENST00000338977 4492 ntTSL 2 BASIC6.54□□□□□ -1.36
CDK5RAP3Q96JB5 NSUN3-201ENST00000314622 3289 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
CDK5RAP3Q96JB5 AL592429.1-201ENST00000403909 1473 ntBASIC6.54□□□□□ -1.36
CDK5RAP3Q96JB5 AC010099.4-201ENST00000424515 1453 ntTSL 5 BASIC6.54□□□□□ -1.36
CDK5RAP3Q96JB5 SLC10A7-202ENST00000394059 1730 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
CDK5RAP3Q96JB5 GPR85-202ENST00000424100 2895 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
CDK5RAP3Q96JB5 AIMP1-202ENST00000394701 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC6.54□□□□□ -1.36
CDK5RAP3Q96JB5 JCHAIN-201ENST00000254801 1438 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
CDK5RAP3Q96JB5 CLEC2D-202ENST00000261340 935 ntAPPRIS ALT2 TSL 1 (best) BASIC6.54□□□□□ -1.36
CDK5RAP3Q96JB5 SSX3-201ENST00000298396 1232 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
CDK5RAP3Q96JB5 TMSB4XP2-201ENST00000335179 210 ntBASIC6.54□□□□□ -1.36
CDK5RAP3Q96JB5 RNA5SP273-201ENST00000362484 113 ntBASIC6.54□□□□□ -1.36
CDK5RAP3Q96JB5 RNA5SP477-201ENST00000362639 119 ntBASIC6.54□□□□□ -1.36
CDK5RAP3Q96JB5 TYRP1-201ENST00000381136 872 ntTSL 2 BASIC6.54□□□□□ -1.36
CDK5RAP3Q96JB5 OR6C4-201ENST00000394256 1046 ntAPPRIS P1 BASIC6.54□□□□□ -1.36
CDK5RAP3Q96JB5 HAO2-IT1-201ENST00000419144 311 ntTSL 5 BASIC6.54□□□□□ -1.36
CDK5RAP3Q96JB5 AL139008.2-201ENST00000420315 395 ntTSL 3 BASIC6.54□□□□□ -1.36
CDK5RAP3Q96JB5 MTND4LP13-201ENST00000425022 298 ntBASIC6.54□□□□□ -1.36
CDK5RAP3Q96JB5 FTLP19-201ENST00000433300 394 ntBASIC6.54□□□□□ -1.36
CDK5RAP3Q96JB5 HNRNPA1P18-201ENST00000433537 927 ntBASIC6.54□□□□□ -1.36
CDK5RAP3Q96JB5 AC011242.1-201ENST00000433596 1158 ntBASIC6.54□□□□□ -1.36
CDK5RAP3Q96JB5 AL162385.2-201ENST00000437864 285 ntTSL 3 BASIC6.54□□□□□ -1.36
CDK5RAP3Q96JB5 Z84478.1-201ENST00000438230 1219 ntBASIC6.54□□□□□ -1.36
CDK5RAP3Q96JB5 AL627224.1-201ENST00000448334 444 ntBASIC6.54□□□□□ -1.36
CDK5RAP3Q96JB5 AC004129.2-201ENST00000457229 287 ntBASIC6.54□□□□□ -1.36
CDK5RAP3Q96JB5 LINC01487-201ENST00000462531 905 ntTSL 2 BASIC6.54□□□□□ -1.36
CDK5RAP3Q96JB5 LINC02000-201ENST00000483245 640 ntTSL 2 BASIC6.54□□□□□ -1.36
CDK5RAP3Q96JB5 EDNRA-204ENST00000506066 1032 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
CDK5RAP3Q96JB5 LINC02236-201ENST00000508881 552 ntTSL 4 BASIC6.54□□□□□ -1.36
CDK5RAP3Q96JB5 RNA5SP438-201ENST00000516561 112 ntBASIC6.54□□□□□ -1.36
CDK5RAP3Q96JB5 LINC01033-204ENST00000523194 715 ntTSL 2 BASIC6.54□□□□□ -1.36
CDK5RAP3Q96JB5 AC010768.4-201ENST00000528183 520 ntTSL 3 BASIC6.54□□□□□ -1.36
CDK5RAP3Q96JB5 AC103855.3-201ENST00000528445 606 ntTSL 5 BASIC6.54□□□□□ -1.36
CDK5RAP3Q96JB5 MYL12A-202ENST00000536605 899 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
CDK5RAP3Q96JB5 AC025917.1-201ENST00000562062 612 ntTSL 3 BASIC6.54□□□□□ -1.36
CDK5RAP3Q96JB5 MTND1P8-201ENST00000571424 950 ntBASIC6.54□□□□□ -1.36
CDK5RAP3Q96JB5 MYL12A-209ENST00000580887 899 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
CDK5RAP3Q96JB5 AP001011.1-201ENST00000583546 690 ntTSL 3 BASIC6.54□□□□□ -1.36
CDK5RAP3Q96JB5 AC100863.1-201ENST00000584843 560 ntTSL 4 BASIC6.54□□□□□ -1.36
CDK5RAP3Q96JB5 UBA52-209ENST00000597451 514 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
CDK5RAP3Q96JB5 AC096947.1-201ENST00000603233 470 ntBASIC6.54□□□□□ -1.36
CDK5RAP3Q96JB5 AC027449.1-201ENST00000608890 407 ntBASIC6.54□□□□□ -1.36
CDK5RAP3Q96JB5 ARID2-202ENST00000422737 5481 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
CDK5RAP3Q96JB5 VWC2L-201ENST00000312504 4610 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
CDK5RAP3Q96JB5 HSPD1P7-201ENST00000447985 1686 ntBASIC6.54□□□□□ -1.36
CDK5RAP3Q96JB5 PINCR-201ENST00000440955 2228 ntTSL 2 BASIC6.54□□□□□ -1.36
CDK5RAP3Q96JB5 LINC00824-203ENST00000520206 2055 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
CDK5RAP3Q96JB5 MYBPC1-209ENST00000547509 3749 ntAPPRIS ALT2 TSL 5 BASIC6.54□□□□□ -1.36
CDK5RAP3Q96JB5 DSPP-201ENST00000282478 4281 ntAPPRIS P1 TSL 5 BASIC6.54□□□□□ -1.36
CDK5RAP3Q96JB5 ZNF415-203ENST00000500065 2496 ntAPPRIS ALT2 TSL 4 BASIC6.54□□□□□ -1.36
CDK5RAP3Q96JB5 PTPRD-206ENST00000397617 8248 ntTSL 5 BASIC6.54□□□□□ -1.36
CDK5RAP3Q96JB5 TBC1D15-201ENST00000319106 2159 ntTSL 2 BASIC6.54□□□□□ -1.36
CDK5RAP3Q96JB5 MTTP-203ENST00000457717 4092 ntAPPRIS P1 TSL 5 BASIC6.54□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 106.6 ms