Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 AC087258.1-203ENST00000545400 1629 ntTSL 2 BASIC5.04□□□□□ -1.6
LMX1BO60663 RYR3-208ENST00000622037 15564 ntAPPRIS ALT2 TSL 5 BASIC5.04□□□□□ -1.6
LMX1BO60663 ZNF493-202ENST00000355504 4386 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
LMX1BO60663 SOX2-OT-218ENST00000498731 3576 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
LMX1BO60663 ATP1B4-201ENST00000218008 3868 ntAPPRIS ALT1 TSL 1 (best) BASIC5.03□□□□□ -1.6
LMX1BO60663 ZNF559-ZNF177-201ENST00000434737 2340 ntAPPRIS ALT2 TSL 2 BASIC5.03□□□□□ -1.6
LMX1BO60663 SLFN13-201ENST00000285013 8469 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
LMX1BO60663 SLC35A5-206ENST00000492406 4399 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
LMX1BO60663 MUC17-201ENST00000306151 14247 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
LMX1BO60663 AC092451.3-201ENST00000625067 1343 ntBASIC5.03□□□□□ -1.6
LMX1BO60663 SNW1-204ENST00000554775 1687 ntTSL 5 BASIC5.03□□□□□ -1.6
LMX1BO60663 SLMAP-208ENST00000449503 4027 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
LMX1BO60663 KLHL13-206ENST00000469946 2353 ntTSL 2 BASIC5.03□□□□□ -1.6
LMX1BO60663 SSX3-201ENST00000298396 1232 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
LMX1BO60663 PRSS37-201ENST00000350549 1189 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
LMX1BO60663 WFDC8-202ENST00000357199 1268 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
LMX1BO60663 IGLV4-3-201ENST00000390318 403 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
LMX1BO60663 UQCRFS1P3-201ENST00000407697 385 ntBASIC5.03□□□□□ -1.6
LMX1BO60663 MIR1178-201ENST00000408396 91 ntBASIC5.03□□□□□ -1.6
LMX1BO60663 AC099566.1-204ENST00000413825 943 ntTSL 3 BASIC5.03□□□□□ -1.6
LMX1BO60663 AL139008.2-201ENST00000420315 395 ntTSL 3 BASIC5.03□□□□□ -1.6
LMX1BO60663 AL353608.2-201ENST00000425587 340 ntTSL 5 BASIC5.03□□□□□ -1.6
LMX1BO60663 AC073508.1-201ENST00000428866 656 ntBASIC5.03□□□□□ -1.6
LMX1BO60663 LINC01611-201ENST00000428896 477 ntTSL 5 BASIC5.03□□□□□ -1.6
LMX1BO60663 AC023141.6-201ENST00000429418 337 ntBASIC5.03□□□□□ -1.6
LMX1BO60663 LINC01781-202ENST00000443104 591 ntTSL 2 BASIC5.03□□□□□ -1.6
LMX1BO60663 AL353804.1-201ENST00000444482 451 ntTSL 5 BASIC5.03□□□□□ -1.6
LMX1BO60663 MTND2P25-201ENST00000449028 610 ntBASIC5.03□□□□□ -1.6
LMX1BO60663 OFD1P3Y-201ENST00000453312 783 ntBASIC5.03□□□□□ -1.6
LMX1BO60663 RPL31P53-201ENST00000457065 348 ntBASIC5.03□□□□□ -1.6
LMX1BO60663 AC093166.4-201ENST00000457867 318 ntBASIC5.03□□□□□ -1.6
LMX1BO60663 AC108751.3-201ENST00000461814 1020 ntBASIC5.03□□□□□ -1.6
LMX1BO60663 AP002371.1-201ENST00000463604 433 ntBASIC5.03□□□□□ -1.6
LMX1BO60663 RPS26P39-201ENST00000469206 341 ntBASIC5.03□□□□□ -1.6
LMX1BO60663 AC112198.4-201ENST00000515450 351 ntBASIC5.03□□□□□ -1.6
LMX1BO60663 AC021146.10-201ENST00000515628 706 ntBASIC5.03□□□□□ -1.6
LMX1BO60663 RNU6-760P-201ENST00000516078 97 ntBASIC5.03□□□□□ -1.6
LMX1BO60663 RNU6ATAC39P-201ENST00000516309 149 ntBASIC5.03□□□□□ -1.6
LMX1BO60663 OR52B2-201ENST00000530810 1079 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
LMX1BO60663 CASP5-209ENST00000531367 879 ntTSL 5 BASIC5.03□□□□□ -1.6
LMX1BO60663 MYRFL-202ENST00000535034 881 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
LMX1BO60663 AC090503.2-201ENST00000551135 981 ntTSL 3 BASIC5.03□□□□□ -1.6
LMX1BO60663 ETFRF1-208ENST00000556402 874 ntTSL 3 BASIC5.03□□□□□ -1.6
LMX1BO60663 AC092078.1-201ENST00000558370 325 ntTSL 3 BASIC5.03□□□□□ -1.6
LMX1BO60663 LINC01243-201ENST00000562065 721 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
LMX1BO60663 TMEM202-202ENST00000567679 588 ntAPPRIS ALT2 TSL 2 BASIC5.03□□□□□ -1.6
LMX1BO60663 LYRM1-211ENST00000569023 769 ntAPPRIS P1 TSL 3 BASIC5.03□□□□□ -1.6
LMX1BO60663 PINLYP-205ENST00000569031 557 ntTSL 2 BASIC5.03□□□□□ -1.6
LMX1BO60663 MIR4776-2-201ENST00000580204 80 ntBASIC5.03□□□□□ -1.6
LMX1BO60663 AP001496.3-201ENST00000580230 913 ntBASIC5.03□□□□□ -1.6
LMX1BO60663 C18orf32-202ENST00000582392 714 ntAPPRIS P1 TSL 3 BASIC5.03□□□□□ -1.6
LMX1BO60663 AC008536.1-201ENST00000602872 669 ntBASIC5.03□□□□□ -1.6
LMX1BO60663 HIRAP1-201ENST00000605318 787 ntBASIC5.03□□□□□ -1.6
LMX1BO60663 AC073111.2-201ENST00000605657 1075 ntBASIC5.03□□□□□ -1.6
LMX1BO60663 AC120053.1-201ENST00000607706 736 ntBASIC5.03□□□□□ -1.6
LMX1BO60663 AC097504.2-201ENST00000608088 454 ntBASIC5.03□□□□□ -1.6
LMX1BO60663 AF129408.1-201ENST00000608767 431 ntBASIC5.03□□□□□ -1.6
LMX1BO60663 AP005431.1-201ENST00000618479 319 ntBASIC5.03□□□□□ -1.6
LMX1BO60663 LINC02033-201ENST00000623207 971 ntTSL 2 BASIC5.03□□□□□ -1.6
LMX1BO60663 FP236241.1-206ENST00000625005 987 ntTSL 5 BASIC5.03□□□□□ -1.6
LMX1BO60663 MAPKBP1-217ENST00000627631 210 ntTSL 5 BASIC5.03□□□□□ -1.6
LMX1BO60663 CPED1-203ENST00000423795 2189 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
LMX1BO60663 WDPCP-203ENST00000409120 5408 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
LMX1BO60663 RAPGEF4-215ENST00000540783 3974 ntTSL 2 BASIC5.03□□□□□ -1.6
LMX1BO60663 CASC15-207ENST00000607048 1634 ntTSL 2 BASIC5.03□□□□□ -1.6
LMX1BO60663 FIRRE-202ENST00000637577 1635 ntTSL 5 BASIC5.03□□□□□ -1.6
LMX1BO60663 LRRN3-204ENST00000451085 3725 ntAPPRIS P1 TSL 2 BASIC5.03□□□□□ -1.6
LMX1BO60663 ZNF93-201ENST00000343769 2648 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
LMX1BO60663 PARP4P2-201ENST00000446672 3326 ntBASIC5.03□□□□□ -1.6
LMX1BO60663 PNPLA4-203ENST00000444736 2752 ntAPPRIS P1 TSL 4 BASIC5.03□□□□□ -1.6
LMX1BO60663 ANKRD46-204ENST00000519597 2779 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
LMX1BO60663 DSC2-201ENST00000251081 4826 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
LMX1BO60663 MUC15-204ENST00000527569 1386 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
LMX1BO60663 BCL2L14-213ENST00000589718 1850 ntAPPRIS P1 TSL 5 BASIC5.03□□□□□ -1.6
LMX1BO60663 ZNF347-201ENST00000334197 7960 ntAPPRIS P3 TSL 1 (best) BASIC5.02□□□□□ -1.61
LMX1BO60663 ZNF347-202ENST00000452676 4553 ntAPPRIS ALT2 TSL 2 BASIC5.02□□□□□ -1.61
LMX1BO60663 TGFBR1-208ENST00000550253 1538 ntTSL 2 BASIC5.02□□□□□ -1.61
LMX1BO60663 AFF2-201ENST00000286437 12280 ntTSL 2 BASIC5.02□□□□□ -1.61
LMX1BO60663 SLC26A7-210ENST00000617233 5257 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
LMX1BO60663 AC109446.4-201ENST00000623235 2755 ntBASIC5.02□□□□□ -1.61
LMX1BO60663 KIAA1328-201ENST00000280020 4853 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
LMX1BO60663 MROH2B-203ENST00000506092 3745 ntTSL 2 BASIC5.02□□□□□ -1.61
LMX1BO60663 AL137058.3-201ENST00000624531 3099 ntBASIC5.02□□□□□ -1.61
LMX1BO60663 AL121594.3-201ENST00000557565 3857 ntAPPRIS P1 TSL 2 BASIC5.02□□□□□ -1.61
LMX1BO60663 BBX-201ENST00000325805 3517 ntAPPRIS ALT2 TSL 1 (best) BASIC5.02□□□□□ -1.61
LMX1BO60663 ECT2L-203ENST00000423192 4319 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
LMX1BO60663 CBX5-201ENST00000209875 11528 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
LMX1BO60663 HMMR-204ENST00000432118 2084 ntAPPRIS ALT2 TSL 2 BASIC5.02□□□□□ -1.61
LMX1BO60663 ZC2HC1B-201ENST00000237275 1002 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
LMX1BO60663 GPR174-201ENST00000276077 1258 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
LMX1BO60663 RNA5SP453-201ENST00000362503 119 ntBASIC5.02□□□□□ -1.61
LMX1BO60663 AL391361.1-201ENST00000405580 489 ntBASIC5.02□□□□□ -1.61
LMX1BO60663 OR3A2-201ENST00000408891 1076 ntBASIC5.02□□□□□ -1.61
LMX1BO60663 SLC19A3-202ENST00000409287 644 ntTSL 3 BASIC5.02□□□□□ -1.61
LMX1BO60663 AC073257.2-201ENST00000413991 528 ntTSL 3 BASIC5.02□□□□□ -1.61
LMX1BO60663 RPL34P3-201ENST00000421454 338 ntBASIC5.02□□□□□ -1.61
LMX1BO60663 AC019205.1-201ENST00000421830 730 ntBASIC5.02□□□□□ -1.61
LMX1BO60663 LINC01040-201ENST00000425048 666 ntTSL 2 BASIC5.02□□□□□ -1.61
LMX1BO60663 AL390115.1-201ENST00000425271 423 ntTSL 5 BASIC5.02□□□□□ -1.61
LMX1BO60663 AL391704.3-201ENST00000425365 831 ntTSL 3 BASIC5.02□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 81.3 ms