Protein–RNA interactions for Protein: Q9C037

TRIM4, E3 ubiquitin-protein ligase TRIM4, humanhuman

Predictions only

Length 500 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4Q9C037 AC002524.1-201ENST00000411687 547 ntBASIC5.66□□□□□ -1.5
TRIM4Q9C037 LIX1L-AS1-202ENST00000412239 570 ntTSL 2 BASIC5.66□□□□□ -1.5
TRIM4Q9C037 AL592078.1-201ENST00000421866 321 ntTSL 3 BASIC5.66□□□□□ -1.5
TRIM4Q9C037 AC073062.1-201ENST00000434509 455 ntTSL 5 BASIC5.66□□□□□ -1.5
TRIM4Q9C037 CUBNP2-201ENST00000443534 1139 ntBASIC5.66□□□□□ -1.5
TRIM4Q9C037 AC004815.1-201ENST00000484185 331 ntBASIC5.66□□□□□ -1.5
TRIM4Q9C037 RNA5SP92-201ENST00000516437 110 ntBASIC5.66□□□□□ -1.5
TRIM4Q9C037 AC026401.1-201ENST00000549756 530 ntTSL 3 BASIC5.66□□□□□ -1.5
TRIM4Q9C037 RNASE9-205ENST00000553706 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
TRIM4Q9C037 AC018523.2-201ENST00000555531 1221 ntAPPRIS P1 TSL 2 BASIC5.66□□□□□ -1.5
TRIM4Q9C037 MIR3691-201ENST00000578066 90 ntBASIC5.66□□□□□ -1.5
TRIM4Q9C037 AP005119.1-201ENST00000580956 292 ntBASIC5.66□□□□□ -1.5
TRIM4Q9C037 MIR6793-201ENST00000612376 63 ntBASIC5.66□□□□□ -1.5
TRIM4Q9C037 AL731566.2-201ENST00000618971 317 ntBASIC5.66□□□□□ -1.5
TRIM4Q9C037 AL136228.1-201ENST00000622221 319 ntBASIC5.66□□□□□ -1.5
TRIM4Q9C037 AL691477.1-201ENST00000624398 162 ntBASIC5.66□□□□□ -1.5
TRIM4Q9C037 AC004808.2-201ENST00000627965 773 ntBASIC5.66□□□□□ -1.5
TRIM4Q9C037 FRG1EP-201ENST00000634469 770 ntBASIC5.66□□□□□ -1.5
TRIM4Q9C037 AC112198.2-201ENST00000426589 6996 ntBASIC5.66□□□□□ -1.5
TRIM4Q9C037 TMEM99-201ENST00000301665 2058 ntAPPRIS P2 TSL 2 BASIC5.66□□□□□ -1.5
TRIM4Q9C037 AC073136.1-201ENST00000449426 2884 ntBASIC5.66□□□□□ -1.5
TRIM4Q9C037 AC130304.1-201ENST00000622942 2385 ntBASIC5.66□□□□□ -1.5
TRIM4Q9C037 AP3B1-204ENST00000519295 3986 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
TRIM4Q9C037 IKZF2-201ENST00000342002 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
TRIM4Q9C037 OOSP2-201ENST00000278855 1633 ntAPPRIS P2 TSL 1 (best) BASIC5.66□□□□□ -1.5
TRIM4Q9C037 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC5.65□□□□□ -1.5
TRIM4Q9C037 KRT222-202ENST00000394052 1712 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
TRIM4Q9C037 OR9Q2-202ENST00000641291 3774 ntAPPRIS P1 BASIC5.65□□□□□ -1.5
TRIM4Q9C037 FGF1-215ENST00000619447 3818 ntAPPRIS P1 TSL 4 BASIC5.65□□□□□ -1.5
TRIM4Q9C037 GPR18-202ENST00000397470 1468 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
TRIM4Q9C037 RABL3-201ENST00000273375 3883 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
TRIM4Q9C037 ZNF624-201ENST00000311331 4241 ntAPPRIS P1 TSL 2 BASIC5.65□□□□□ -1.5
TRIM4Q9C037 FCHO2-207ENST00000512348 2700 ntTSL 2 BASIC5.65□□□□□ -1.5
TRIM4Q9C037 BBX-204ENST00000406780 3674 ntAPPRIS P3 TSL 5 BASIC5.65□□□□□ -1.5
TRIM4Q9C037 STRBP-204ENST00000447404 6161 ntAPPRIS P1 TSL 2 BASIC5.65□□□□□ -1.5
TRIM4Q9C037 NFAT5-212ENST00000627621 5875 ntAPPRIS ALT1 TSL 2 BASIC5.65□□□□□ -1.5
TRIM4Q9C037 EXO1-201ENST00000348581 3192 ntAPPRIS P3 TSL 1 (best) BASIC5.65□□□□□ -1.5
TRIM4Q9C037 RNU6-249P-201ENST00000363016 102 ntBASIC5.65□□□□□ -1.5
TRIM4Q9C037 CTSL3P-202ENST00000412179 788 ntBASIC5.65□□□□□ -1.5
TRIM4Q9C037 FRMPD4-AS1-201ENST00000425057 285 ntTSL 3 BASIC5.65□□□□□ -1.5
TRIM4Q9C037 AL162727.2-201ENST00000428429 395 ntTSL 3 BASIC5.65□□□□□ -1.5
TRIM4Q9C037 RPS12P17-201ENST00000438591 377 ntBASIC5.65□□□□□ -1.5
TRIM4Q9C037 RPL12P3-201ENST00000440080 396 ntBASIC5.65□□□□□ -1.5
TRIM4Q9C037 LARGE-IT1-201ENST00000445391 558 ntTSL 4 BASIC5.65□□□□□ -1.5
TRIM4Q9C037 EIF4A1P6-201ENST00000448133 1210 ntBASIC5.65□□□□□ -1.5
TRIM4Q9C037 SEPT7P3-201ENST00000455017 621 ntBASIC5.65□□□□□ -1.5
TRIM4Q9C037 ACA64.4-201ENST00000459070 127 ntBASIC5.65□□□□□ -1.5
TRIM4Q9C037 AC008953.1-201ENST00000497334 318 ntBASIC5.65□□□□□ -1.5
TRIM4Q9C037 AC006499.3-201ENST00000506077 748 ntBASIC5.65□□□□□ -1.5
TRIM4Q9C037 AC084871.1-201ENST00000508020 628 ntTSL 3 BASIC5.65□□□□□ -1.5
TRIM4Q9C037 RNA5SP228-201ENST00000516232 133 ntBASIC5.65□□□□□ -1.5
TRIM4Q9C037 CDH12P4-201ENST00000517835 295 ntBASIC5.65□□□□□ -1.5
TRIM4Q9C037 CDH12P3-201ENST00000517935 295 ntBASIC5.65□□□□□ -1.5
TRIM4Q9C037 CDH12P1-201ENST00000518435 295 ntBASIC5.65□□□□□ -1.5
TRIM4Q9C037 AC090155.1-201ENST00000520800 407 ntTSL 3 BASIC5.65□□□□□ -1.5
TRIM4Q9C037 WBP1LP3-201ENST00000523033 208 ntBASIC5.65□□□□□ -1.5
TRIM4Q9C037 LINC01895-201ENST00000558690 404 ntTSL 5 BASIC5.65□□□□□ -1.5
TRIM4Q9C037 AC144836.1-201ENST00000575911 340 ntTSL 2 BASIC5.65□□□□□ -1.5
TRIM4Q9C037 SSX4B-201ENST00000595235 1221 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
TRIM4Q9C037 SSX4-201ENST00000595689 1221 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
TRIM4Q9C037 uc_338.26-201ENST00000612659 160 ntBASIC5.65□□□□□ -1.5
TRIM4Q9C037 MAPKBP1-217ENST00000627631 210 ntTSL 5 BASIC5.65□□□□□ -1.5
TRIM4Q9C037 LINC01685-203ENST00000634464 1201 ntTSL 5 BASIC5.65□□□□□ -1.5
TRIM4Q9C037 CCDC195-201ENST00000638102 606 ntAPPRIS P1 TSL 5 BASIC5.65□□□□□ -1.5
TRIM4Q9C037 RASSF8-201ENST00000282884 1994 ntAPPRIS P1 TSL 2 BASIC5.65□□□□□ -1.51
TRIM4Q9C037 KDM3B-209ENST00000542866 3634 ntTSL 2 BASIC5.65□□□□□ -1.51
TRIM4Q9C037 DDX4-202ENST00000354991 2324 ntTSL 5 BASIC5.65□□□□□ -1.51
TRIM4Q9C037 ZNF195-201ENST00000005082 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC5.65□□□□□ -1.51
TRIM4Q9C037 SMG1P7-201ENST00000565246 2704 ntBASIC5.65□□□□□ -1.51
TRIM4Q9C037 ATF2-212ENST00000426833 4132 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
TRIM4Q9C037 LINC02261-201ENST00000512873 2802 ntTSL 2 BASIC5.65□□□□□ -1.51
TRIM4Q9C037 TRPC4-205ENST00000379679 2475 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
TRIM4Q9C037 SLC26A5-208ENST00000393730 2498 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
TRIM4Q9C037 AC012254.3-201ENST00000591183 2117 ntBASIC5.65□□□□□ -1.51
TRIM4Q9C037 FOXP2-209ENST00000393498 2617 ntTSL 5 BASIC5.64□□□□□ -1.51
TRIM4Q9C037 ZNF790-201ENST00000356725 3037 ntAPPRIS P1 TSL 2 BASIC5.64□□□□□ -1.51
TRIM4Q9C037 AL590763.1-201ENST00000398297 1545 ntBASIC5.64□□□□□ -1.51
TRIM4Q9C037 ABCA6-206ENST00000590645 1511 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
TRIM4Q9C037 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
TRIM4Q9C037 ARHGAP5-210ENST00000556611 4824 ntAPPRIS ALT1 TSL 5 BASIC5.64□□□□□ -1.51
TRIM4Q9C037 ABCA13-204ENST00000435803 17184 ntAPPRIS P2 TSL 1 (best) BASIC5.64□□□□□ -1.51
TRIM4Q9C037 OR2L2-201ENST00000366479 1134 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
TRIM4Q9C037 AL096711.1-201ENST00000404780 554 ntBASIC5.64□□□□□ -1.51
TRIM4Q9C037 MYL6P5-201ENST00000412707 459 ntBASIC5.64□□□□□ -1.51
TRIM4Q9C037 RPL35AP31-201ENST00000418340 337 ntBASIC5.64□□□□□ -1.51
TRIM4Q9C037 AC104170.2-201ENST00000424246 678 ntTSL 3 BASIC5.64□□□□□ -1.51
TRIM4Q9C037 AL139121.1-201ENST00000445647 244 ntTSL 2 BASIC5.64□□□□□ -1.51
TRIM4Q9C037 AC108693.1-201ENST00000496068 432 ntBASIC5.64□□□□□ -1.51
TRIM4Q9C037 SETP21-201ENST00000514799 892 ntBASIC5.64□□□□□ -1.51
TRIM4Q9C037 AC107391.1-201ENST00000514966 412 ntTSL 2 BASIC5.64□□□□□ -1.51
TRIM4Q9C037 AC068672.3-201ENST00000524017 824 ntTSL 3 BASIC5.64□□□□□ -1.51
TRIM4Q9C037 KCTD21-AS1-203ENST00000527321 586 ntTSL 3 BASIC5.64□□□□□ -1.51
TRIM4Q9C037 PPIAL4F-202ENST00000581138 660 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
TRIM4Q9C037 PPIAL4E-201ENST00000581164 785 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
TRIM4Q9C037 MIR3936-201ENST00000584304 110 ntBASIC5.64□□□□□ -1.51
TRIM4Q9C037 ZNF738-205ENST00000597810 747 ntAPPRIS ALT2 TSL 3 BASIC5.64□□□□□ -1.51
TRIM4Q9C037 FO393422.1-201ENST00000603908 708 ntBASIC5.64□□□□□ -1.51
TRIM4Q9C037 AC008280.3-201ENST00000606436 732 ntTSL 5 BASIC5.64□□□□□ -1.51
TRIM4Q9C037 AL513314.2-201ENST00000621440 545 ntTSL 5 BASIC5.64□□□□□ -1.51
TRIM4Q9C037 SAMMSON-227ENST00000642114 1199 ntBASIC5.64□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 9.6 ms