Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 AC135803.1-201ENST00000608748 565 ntBASIC7.48□□□□□ -1.21
CHMP4AQ9BY43 U1.25-201ENST00000614085 162 ntBASIC7.48□□□□□ -1.21
CHMP4AQ9BY43 LINC01955-201ENST00000626392 792 ntTSL 5 BASIC7.48□□□□□ -1.21
CHMP4AQ9BY43 SNORA17.5-201ENST00000630429 132 ntBASIC7.48□□□□□ -1.21
CHMP4AQ9BY43 POLR1D-218ENST00000636817 4592 ntTSL 5 BASIC7.48□□□□□ -1.21
CHMP4AQ9BY43 MIR193BHG-214ENST00000641765 509 ntBASIC7.48□□□□□ -1.21
CHMP4AQ9BY43 AL158835.1-203ENST00000415305 3149 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
CHMP4AQ9BY43 VEZT-204ENST00000436874 4562 ntAPPRIS P1 TSL 1 (best) BASIC7.48□□□□□ -1.21
CHMP4AQ9BY43 IL15-204ENST00000477265 6026 ntTSL 1 (best) BASIC7.48□□□□□ -1.21
CHMP4AQ9BY43 AC016576.1-201ENST00000637153 3585 ntTSL 5 BASIC7.48□□□□□ -1.21
CHMP4AQ9BY43 ZNF83-204ENST00000545872 2633 ntAPPRIS P1 TSL 2 BASIC7.48□□□□□ -1.21
CHMP4AQ9BY43 ZNF611-201ENST00000319783 3153 ntAPPRIS P1 TSL 2 BASIC7.47□□□□□ -1.21
CHMP4AQ9BY43 HSPD1P11-201ENST00000508643 1702 ntBASIC7.47□□□□□ -1.21
CHMP4AQ9BY43 ESRRG-205ENST00000366937 5365 ntTSL 1 (best) BASIC7.47□□□□□ -1.21
CHMP4AQ9BY43 NFAT5-212ENST00000627621 5875 ntAPPRIS ALT1 TSL 2 BASIC7.47□□□□□ -1.21
CHMP4AQ9BY43 AL603840.1-201ENST00000422374 4063 ntTSL 2 BASIC7.47□□□□□ -1.21
CHMP4AQ9BY43 DNAH12-203ENST00000389536 2613 ntTSL 5 BASIC7.47□□□□□ -1.21
CHMP4AQ9BY43 OR4S2-201ENST00000312422 936 ntAPPRIS P1 BASIC7.47□□□□□ -1.21
CHMP4AQ9BY43 RPL11P3-201ENST00000395256 523 ntBASIC7.47□□□□□ -1.21
CHMP4AQ9BY43 TOMM7-203ENST00000405021 455 ntTSL 2 BASIC7.47□□□□□ -1.21
CHMP4AQ9BY43 DHFRP5-201ENST00000406944 564 ntBASIC7.47□□□□□ -1.21
CHMP4AQ9BY43 OR2AT2P-201ENST00000413438 905 ntBASIC7.47□□□□□ -1.21
CHMP4AQ9BY43 AL445190.1-201ENST00000416448 288 ntTSL 5 BASIC7.47□□□□□ -1.21
CHMP4AQ9BY43 PPP2R2DP1-201ENST00000420526 637 ntBASIC7.47□□□□□ -1.21
CHMP4AQ9BY43 AC093155.2-201ENST00000420734 937 ntBASIC7.47□□□□□ -1.21
CHMP4AQ9BY43 AL158817.1-201ENST00000422310 933 ntTSL 3 BASIC7.47□□□□□ -1.21
CHMP4AQ9BY43 AL139280.1-201ENST00000436340 463 ntTSL 3 BASIC7.47□□□□□ -1.21
CHMP4AQ9BY43 RPS12P17-201ENST00000438591 377 ntBASIC7.47□□□□□ -1.21
CHMP4AQ9BY43 AL353804.1-201ENST00000444482 451 ntTSL 5 BASIC7.47□□□□□ -1.21
CHMP4AQ9BY43 RNF219-AS1-202ENST00000444769 590 ntTSL 4 BASIC7.47□□□□□ -1.21
CHMP4AQ9BY43 AL157827.1-201ENST00000447622 132 ntBASIC7.47□□□□□ -1.21
CHMP4AQ9BY43 RPL38P3-201ENST00000484463 213 ntBASIC7.47□□□□□ -1.21
CHMP4AQ9BY43 AC025470.2-201ENST00000506106 897 ntTSL 2 BASIC7.47□□□□□ -1.21
CHMP4AQ9BY43 AC122710.1-201ENST00000510622 553 ntTSL 5 BASIC7.47□□□□□ -1.21
CHMP4AQ9BY43 GYPB-213ENST00000513128 360 ntTSL 1 (best) BASIC7.47□□□□□ -1.21
CHMP4AQ9BY43 MTATP6P1-201ENST00000514057 681 ntBASIC7.47□□□□□ -1.21
CHMP4AQ9BY43 WDYHV1-203ENST00000518125 880 ntTSL 2 BASIC7.47□□□□□ -1.21
CHMP4AQ9BY43 AP001267.3-202ENST00000525992 448 ntTSL 3 BASIC7.47□□□□□ -1.21
CHMP4AQ9BY43 AC103855.3-201ENST00000528445 606 ntTSL 5 BASIC7.47□□□□□ -1.21
CHMP4AQ9BY43 CDKN3-206ENST00000541304 1070 ntTSL 2 BASIC7.47□□□□□ -1.21
CHMP4AQ9BY43 AC078820.1-201ENST00000548702 742 ntTSL 3 BASIC7.47□□□□□ -1.21
CHMP4AQ9BY43 AC091231.1-201ENST00000558443 391 ntTSL 5 BASIC7.47□□□□□ -1.21
CHMP4AQ9BY43 AC087286.2-201ENST00000558980 660 ntTSL 3 BASIC7.47□□□□□ -1.21
CHMP4AQ9BY43 AC007601.2-201ENST00000566957 502 ntTSL 3 BASIC7.47□□□□□ -1.21
CHMP4AQ9BY43 AC005726.5-201ENST00000585189 298 ntTSL 5 BASIC7.47□□□□□ -1.21
CHMP4AQ9BY43 AC098617.1-205ENST00000595918 1032 ntTSL 5 BASIC7.47□□□□□ -1.21
CHMP4AQ9BY43 ZNF649-AS1-201ENST00000600329 579 ntTSL 4 BASIC7.47□□□□□ -1.21
CHMP4AQ9BY43 PCBP1-AS1-282ENST00000625783 826 ntTSL 5 BASIC7.47□□□□□ -1.21
CHMP4AQ9BY43 DARS-AS1-227ENST00000627442 633 ntTSL 5 BASIC7.47□□□□□ -1.21
CHMP4AQ9BY43 LINC01685-203ENST00000634464 1201 ntTSL 5 BASIC7.47□□□□□ -1.21
CHMP4AQ9BY43 AC002429.2-202ENST00000637269 394 ntAPPRIS P1 TSL 3 BASIC7.47□□□□□ -1.21
CHMP4AQ9BY43 AC092375.1-202ENST00000639452 404 ntTSL 3 BASIC7.47□□□□□ -1.21
CHMP4AQ9BY43 ZNF195-201ENST00000005082 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC7.47□□□□□ -1.21
CHMP4AQ9BY43 RALYL-211ENST00000523850 1684 ntTSL 2 BASIC7.47□□□□□ -1.21
CHMP4AQ9BY43 ZNF33B-208ENST00000613419 5843 ntAPPRIS ALT2 TSL 5 BASIC7.47□□□□□ -1.21
CHMP4AQ9BY43 CRNDE-212ENST00000613942 2601 ntTSL 5 BASIC7.47□□□□□ -1.21
CHMP4AQ9BY43 ALG10B-201ENST00000308742 10253 ntAPPRIS P1 TSL 1 (best) BASIC7.47□□□□□ -1.21
CHMP4AQ9BY43 ART3-203ENST00000355810 1561 ntAPPRIS ALT2 TSL 1 (best) BASIC7.46□□□□□ -1.21
CHMP4AQ9BY43 TMEM161B-211ENST00000512429 1796 ntTSL 2 BASIC7.46□□□□□ -1.21
CHMP4AQ9BY43 AC090017.1-201ENST00000548612 1779 ntBASIC7.46□□□□□ -1.21
CHMP4AQ9BY43 WDR72-203ENST00000557913 5900 ntAPPRIS ALT1 TSL 5 BASIC7.46□□□□□ -1.21
CHMP4AQ9BY43 PAK3-201ENST00000262836 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC7.46□□□□□ -1.21
CHMP4AQ9BY43 KLHL13-206ENST00000469946 2353 ntTSL 2 BASIC7.46□□□□□ -1.21
CHMP4AQ9BY43 LINC00240-204ENST00000607607 5607 ntTSL 1 (best) BASIC7.46□□□□□ -1.21
CHMP4AQ9BY43 THEMIS-206ENST00000630369 2786 ntAPPRIS ALT2 TSL 1 (best) BASIC7.46□□□□□ -1.21
CHMP4AQ9BY43 RNF145-201ENST00000274542 3364 ntTSL 2 BASIC7.46□□□□□ -1.22
CHMP4AQ9BY43 OR51B6-201ENST00000380219 939 ntAPPRIS P1 BASIC7.46□□□□□ -1.22
CHMP4AQ9BY43 SNORA68.2-201ENST00000391263 128 ntBASIC7.46□□□□□ -1.22
CHMP4AQ9BY43 MRPL53P1-201ENST00000414323 319 ntBASIC7.46□□□□□ -1.22
CHMP4AQ9BY43 AC006065.1-201ENST00000422539 802 ntBASIC7.46□□□□□ -1.22
CHMP4AQ9BY43 AC244035.2-201ENST00000425896 630 ntTSL 3 BASIC7.46□□□□□ -1.22
CHMP4AQ9BY43 AL445528.1-201ENST00000426330 420 ntBASIC7.46□□□□□ -1.22
CHMP4AQ9BY43 BX323845.3-201ENST00000428215 527 ntBASIC7.46□□□□□ -1.22
CHMP4AQ9BY43 LINC02528-202ENST00000434437 535 ntTSL 2 BASIC7.46□□□□□ -1.22
CHMP4AQ9BY43 AL353597.2-202ENST00000434901 373 ntBASIC7.46□□□□□ -1.22
CHMP4AQ9BY43 RNU6-775P-201ENST00000459318 96 ntBASIC7.46□□□□□ -1.22
CHMP4AQ9BY43 RPL5P13-201ENST00000462840 709 ntBASIC7.46□□□□□ -1.22
CHMP4AQ9BY43 TIFA-202ENST00000500655 769 ntAPPRIS P1 TSL 3 BASIC7.46□□□□□ -1.22
CHMP4AQ9BY43 AC093890.1-201ENST00000502554 540 ntBASIC7.46□□□□□ -1.22
CHMP4AQ9BY43 RNA5SP228-201ENST00000516232 133 ntBASIC7.46□□□□□ -1.22
CHMP4AQ9BY43 AC091987.1-201ENST00000517758 464 ntTSL 3 BASIC7.46□□□□□ -1.22
CHMP4AQ9BY43 AC062004.1-202ENST00000524014 246 ntTSL 5 BASIC7.46□□□□□ -1.22
CHMP4AQ9BY43 AP005436.1-201ENST00000531454 488 ntTSL 2 BASIC7.46□□□□□ -1.22
CHMP4AQ9BY43 AC092868.3-201ENST00000560515 784 ntBASIC7.46□□□□□ -1.22
CHMP4AQ9BY43 AC022211.1-201ENST00000579554 717 ntTSL 3 BASIC7.46□□□□□ -1.22
CHMP4AQ9BY43 AL354733.2-210ENST00000586211 647 ntTSL 5 BASIC7.46□□□□□ -1.22
CHMP4AQ9BY43 PIK3C3-207ENST00000587402 452 ntTSL 3 BASIC7.46□□□□□ -1.22
CHMP4AQ9BY43 AC016911.1-201ENST00000613297 452 ntBASIC7.46□□□□□ -1.22
CHMP4AQ9BY43 IGLV10-54-202ENST00000640991 351 ntTSL 5 BASIC7.46□□□□□ -1.22
CHMP4AQ9BY43 HSPD1P8-201ENST00000400121 1658 ntBASIC7.46□□□□□ -1.22
CHMP4AQ9BY43 RBMY1F-201ENST00000303766 1887 ntAPPRIS P5 TSL 1 (best) BASIC7.46□□□□□ -1.22
CHMP4AQ9BY43 AC005162.3-201ENST00000609389 3695 ntTSL 5 BASIC7.46□□□□□ -1.22
CHMP4AQ9BY43 RFC1-202ENST00000381897 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC7.46□□□□□ -1.22
CHMP4AQ9BY43 ZNF300P1-202ENST00000520773 3115 ntTSL 5 BASIC7.46□□□□□ -1.22
CHMP4AQ9BY43 AC093535.2-201ENST00000624769 2326 ntBASIC7.46□□□□□ -1.22
CHMP4AQ9BY43 MRRF-208ENST00000394315 1501 ntTSL 1 (best) BASIC7.46□□□□□ -1.22
CHMP4AQ9BY43 FILIP1L-201ENST00000331335 4219 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.22
CHMP4AQ9BY43 LRRK2-201ENST00000298910 9158 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.22
CHMP4AQ9BY43 LRRC77P-206ENST00000481578 2350 ntTSL 1 (best) BASIC7.46□□□□□ -1.22
CHMP4AQ9BY43 UGT2A1-206ENST00000514019 2376 ntTSL 2 BASIC7.46□□□□□ -1.22
Retrieved 100 of 98,524 protein–RNA pairs in 92.6 ms