Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 AC011601.1-201ENST00000549710 577 ntTSL 3 BASIC6□□□□□ -1.45
CCDC112Q8NEF3 AC012146.2-201ENST00000576545 416 ntBASIC6□□□□□ -1.45
CCDC112Q8NEF3 AC090236.2-201ENST00000587933 1101 ntBASIC6□□□□□ -1.45
CCDC112Q8NEF3 TULP3P1-203ENST00000606237 586 ntTSL 4 BASIC6□□□□□ -1.45
CCDC112Q8NEF3 ITCH-201ENST00000262650 3089 ntTSL 1 (best) BASIC6□□□□□ -1.45
CCDC112Q8NEF3 ERC2-201ENST00000288221 6138 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
CCDC112Q8NEF3 ERMN-201ENST00000397283 3760 ntTSL 2 BASIC6□□□□□ -1.45
CCDC112Q8NEF3 RALYL-211ENST00000523850 1684 ntTSL 2 BASIC6□□□□□ -1.45
CCDC112Q8NEF3 AC003973.3-201ENST00000624863 2822 ntBASIC6□□□□□ -1.45
CCDC112Q8NEF3 RASAL2-203ENST00000462775 14453 ntAPPRIS ALT2 TSL 1 (best) BASIC6□□□□□ -1.45
CCDC112Q8NEF3 SMC2-AS1-201ENST00000603487 7020 ntTSL 2 BASIC6□□□□□ -1.45
CCDC112Q8NEF3 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC6□□□□□ -1.45
CCDC112Q8NEF3 CEP164P1-202ENST00000456938 2472 ntTSL 1 (best) BASIC6□□□□□ -1.45
CCDC112Q8NEF3 ZNF652P1-201ENST00000442420 1309 ntBASIC5.99□□□□□ -1.45
CCDC112Q8NEF3 ROS1-201ENST00000368507 7417 ntAPPRIS ALT2 TSL 5 BASIC5.99□□□□□ -1.45
CCDC112Q8NEF3 MAP3K7-203ENST00000369327 4558 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
CCDC112Q8NEF3 ABCA13-204ENST00000435803 17184 ntAPPRIS P2 TSL 1 (best) BASIC5.99□□□□□ -1.45
CCDC112Q8NEF3 NUDT12-202ENST00000507423 1781 ntTSL 2 BASIC5.99□□□□□ -1.45
CCDC112Q8NEF3 SNW1-204ENST00000554775 1687 ntTSL 5 BASIC5.99□□□□□ -1.45
CCDC112Q8NEF3 CEP120-203ENST00000328236 4710 ntAPPRIS P1 TSL 5 BASIC5.99□□□□□ -1.45
CCDC112Q8NEF3 RLN1-201ENST00000223862 967 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
CCDC112Q8NEF3 SCGB3A2-201ENST00000296694 515 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
CCDC112Q8NEF3 LST1-207ENST00000376092 285 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
CCDC112Q8NEF3 AC092111.3-201ENST00000402465 496 ntAPPRIS P1 TSL 2 BASIC5.99□□□□□ -1.45
CCDC112Q8NEF3 BX284656.2-201ENST00000414483 498 ntTSL 2 BASIC5.99□□□□□ -1.45
CCDC112Q8NEF3 ODF2-AS1-201ENST00000420801 407 ntTSL 3 BASIC5.99□□□□□ -1.45
CCDC112Q8NEF3 HSPE1P16-201ENST00000426640 348 ntBASIC5.99□□□□□ -1.45
CCDC112Q8NEF3 LINC01506-201ENST00000432148 495 ntTSL 2 BASIC5.99□□□□□ -1.45
CCDC112Q8NEF3 RPL34P6-201ENST00000432390 345 ntBASIC5.99□□□□□ -1.45
CCDC112Q8NEF3 AL359839.1-201ENST00000451975 1160 ntBASIC5.99□□□□□ -1.45
CCDC112Q8NEF3 SETP20-201ENST00000457046 852 ntBASIC5.99□□□□□ -1.45
CCDC112Q8NEF3 AC004692.2-201ENST00000457315 355 ntTSL 3 BASIC5.99□□□□□ -1.45
CCDC112Q8NEF3 RNA5SP103-201ENST00000459503 118 ntBASIC5.99□□□□□ -1.45
CCDC112Q8NEF3 RPL32P33-201ENST00000487023 394 ntBASIC5.99□□□□□ -1.45
CCDC112Q8NEF3 AC092916.1-201ENST00000497896 411 ntTSL 3 BASIC5.99□□□□□ -1.45
CCDC112Q8NEF3 SCGB3A2-202ENST00000504320 440 ntTSL 3 BASIC5.99□□□□□ -1.45
CCDC112Q8NEF3 SCARNA18.1-201ENST00000516330 83 ntBASIC5.99□□□□□ -1.45
CCDC112Q8NEF3 HSPE1P2-201ENST00000554777 306 ntBASIC5.99□□□□□ -1.45
CCDC112Q8NEF3 OR4C13-201ENST00000555099 1029 ntAPPRIS P1 BASIC5.99□□□□□ -1.45
CCDC112Q8NEF3 RPA2P1-201ENST00000556557 721 ntBASIC5.99□□□□□ -1.45
CCDC112Q8NEF3 FRMD6-AS2-201ENST00000556617 548 ntTSL 4 BASIC5.99□□□□□ -1.45
CCDC112Q8NEF3 INO80-AS1-201ENST00000558967 312 ntTSL 5 BASIC5.99□□□□□ -1.45
CCDC112Q8NEF3 LINC02193-202ENST00000566864 719 ntTSL 3 BASIC5.99□□□□□ -1.45
CCDC112Q8NEF3 AL117336.3-201ENST00000603160 1107 ntTSL 3 BASIC5.99□□□□□ -1.45
CCDC112Q8NEF3 FO681491.1-202ENST00000623392 737 ntBASIC5.99□□□□□ -1.45
CCDC112Q8NEF3 AC022919.1-201ENST00000624979 626 ntBASIC5.99□□□□□ -1.45
CCDC112Q8NEF3 PCBP1-AS1-286ENST00000625888 765 ntTSL 5 BASIC5.99□□□□□ -1.45
CCDC112Q8NEF3 DGKH-210ENST00000628433 3449 ntTSL 2 BASIC5.99□□□□□ -1.45
CCDC112Q8NEF3 RXFP1-206ENST00000460056 2735 ntTSL 2 BASIC5.99□□□□□ -1.45
CCDC112Q8NEF3 AC093849.1-201ENST00000563631 2209 ntBASIC5.99□□□□□ -1.45
CCDC112Q8NEF3 ALS2CR12-202ENST00000392257 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC5.99□□□□□ -1.45
CCDC112Q8NEF3 GABRA1-218ENST00000637827 1838 ntAPPRIS P1 TSL 5 BASIC5.99□□□□□ -1.45
CCDC112Q8NEF3 GLYATL1-202ENST00000317391 1627 ntAPPRIS ALT2 TSL 1 (best) BASIC5.99□□□□□ -1.45
CCDC112Q8NEF3 AL450345.1-202ENST00000605741 3881 ntBASIC5.99□□□□□ -1.45
CCDC112Q8NEF3 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC112Q8NEF3 LRRC39-202ENST00000370137 1396 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC112Q8NEF3 OBSCN-214ENST00000636875 23907 ntTSL 5 BASIC5.98□□□□□ -1.45
CCDC112Q8NEF3 GABRG3-201ENST00000333743 1235 ntTSL 5 BASIC5.98□□□□□ -1.45
CCDC112Q8NEF3 MAX-203ENST00000341653 330 ntTSL 2 BASIC5.98□□□□□ -1.45
CCDC112Q8NEF3 OR2J2-202ENST00000377167 1272 ntAPPRIS P1 BASIC5.98□□□□□ -1.45
CCDC112Q8NEF3 SLC20A1P1-201ENST00000413906 956 ntBASIC5.98□□□□□ -1.45
CCDC112Q8NEF3 MRPL53P1-201ENST00000414323 319 ntBASIC5.98□□□□□ -1.45
CCDC112Q8NEF3 FO393401.1-203ENST00000416260 486 ntTSL 5 BASIC5.98□□□□□ -1.45
CCDC112Q8NEF3 AC004882.2-201ENST00000420180 244 ntTSL 5 BASIC5.98□□□□□ -1.45
CCDC112Q8NEF3 AC066692.1-201ENST00000421721 457 ntBASIC5.98□□□□□ -1.45
CCDC112Q8NEF3 AC004990.1-201ENST00000431722 564 ntTSL 4 BASIC5.98□□□□□ -1.45
CCDC112Q8NEF3 AC090018.1-201ENST00000434369 367 ntBASIC5.98□□□□□ -1.45
CCDC112Q8NEF3 GTF3AP5-201ENST00000442645 697 ntBASIC5.98□□□□□ -1.45
CCDC112Q8NEF3 LINC01436-201ENST00000457157 1048 ntTSL 2 BASIC5.98□□□□□ -1.45
CCDC112Q8NEF3 AL122020.1-201ENST00000472287 459 ntBASIC5.98□□□□□ -1.45
CCDC112Q8NEF3 RPS17P15-201ENST00000475609 349 ntBASIC5.98□□□□□ -1.45
CCDC112Q8NEF3 AC009120.1-201ENST00000493458 473 ntBASIC5.98□□□□□ -1.45
CCDC112Q8NEF3 AL158068.1-201ENST00000506116 616 ntBASIC5.98□□□□□ -1.45
CCDC112Q8NEF3 AC069272.1-201ENST00000514843 680 ntTSL 3 BASIC5.98□□□□□ -1.45
CCDC112Q8NEF3 RN7SKP238-201ENST00000516483 249 ntBASIC5.98□□□□□ -1.45
CCDC112Q8NEF3 IGKV3D-25-201ENST00000519599 235 ntBASIC5.98□□□□□ -1.45
CCDC112Q8NEF3 WBP1LP3-201ENST00000523033 208 ntBASIC5.98□□□□□ -1.45
CCDC112Q8NEF3 HMGN2P36-201ENST00000529541 409 ntBASIC5.98□□□□□ -1.45
CCDC112Q8NEF3 NANOGNBP2-201ENST00000544753 553 ntBASIC5.98□□□□□ -1.45
CCDC112Q8NEF3 AC006530.1-201ENST00000555980 571 ntBASIC5.98□□□□□ -1.45
CCDC112Q8NEF3 AL356801.1-201ENST00000559320 294 ntBASIC5.98□□□□□ -1.45
CCDC112Q8NEF3 AP005262.1-201ENST00000582646 997 ntBASIC5.98□□□□□ -1.45
CCDC112Q8NEF3 AC117569.1-201ENST00000584482 739 ntTSL 3 BASIC5.98□□□□□ -1.45
CCDC112Q8NEF3 TEX41-218ENST00000596540 882 ntTSL 5 BASIC5.98□□□□□ -1.45
CCDC112Q8NEF3 MIR6862-1-201ENST00000613016 70 ntBASIC5.98□□□□□ -1.45
CCDC112Q8NEF3 MIR6862-2-201ENST00000614755 70 ntBASIC5.98□□□□□ -1.45
CCDC112Q8NEF3 Metazoa_SRP.43-201ENST00000616394 271 ntBASIC5.98□□□□□ -1.45
CCDC112Q8NEF3 RBMS3-AS2-206ENST00000629296 438 ntTSL 5 BASIC5.98□□□□□ -1.45
CCDC112Q8NEF3 PHACTR2P1-202ENST00000636592 773 ntTSL 5 BASIC5.98□□□□□ -1.45
CCDC112Q8NEF3 AC073869.8-201ENST00000641806 335 ntBASIC5.98□□□□□ -1.45
CCDC112Q8NEF3 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC5.98□□□□□ -1.45
CCDC112Q8NEF3 CASP1-208ENST00000527979 1521 ntTSL 5 BASIC5.98□□□□□ -1.45
CCDC112Q8NEF3 OBSCN-205ENST00000422127 24060 ntTSL 5 BASIC5.98□□□□□ -1.45
CCDC112Q8NEF3 NAT1-208ENST00000520546 1446 ntAPPRIS P1 BASIC5.98□□□□□ -1.45
CCDC112Q8NEF3 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC5.98□□□□□ -1.45
CCDC112Q8NEF3 POU2F1-202ENST00000367862 14038 ntAPPRIS ALT2 TSL 1 (best) BASIC5.97□□□□□ -1.45
CCDC112Q8NEF3 INTU-201ENST00000335251 13233 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
CCDC112Q8NEF3 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC5.97□□□□□ -1.45
CCDC112Q8NEF3 CLUL1-213ENST00000620089 1947 ntTSL 5 BASIC5.97□□□□□ -1.45
CCDC112Q8NEF3 EHBP1-202ENST00000405015 4108 ntAPPRIS ALT2 TSL 2 BASIC5.97□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 69.6 ms