Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 AC009302.1-201ENST00000417147 390 ntBASIC5.39□□□□□ -1.55
NUP54Q7Z3B4 AC004594.1-217ENST00000422260 325 ntTSL 2 BASIC5.39□□□□□ -1.55
NUP54Q7Z3B4 KCTD9P1-201ENST00000430462 1167 ntBASIC5.39□□□□□ -1.55
NUP54Q7Z3B4 CA1-201ENST00000431316 1232 ntAPPRIS P1 TSL 5 BASIC5.39□□□□□ -1.55
NUP54Q7Z3B4 MTCO1P45-201ENST00000431457 267 ntBASIC5.39□□□□□ -1.55
NUP54Q7Z3B4 FTO-202ENST00000431610 707 ntTSL 3 BASIC5.39□□□□□ -1.55
NUP54Q7Z3B4 AC012668.2-201ENST00000431727 503 ntTSL 3 BASIC5.39□□□□□ -1.55
NUP54Q7Z3B4 MTCYBP29-201ENST00000436327 1006 ntBASIC5.39□□□□□ -1.55
NUP54Q7Z3B4 AC132807.1-201ENST00000449613 458 ntTSL 3 BASIC5.39□□□□□ -1.55
NUP54Q7Z3B4 snoU13.29-201ENST00000459370 104 ntBASIC5.39□□□□□ -1.55
NUP54Q7Z3B4 AC011476.1-201ENST00000466725 307 ntBASIC5.39□□□□□ -1.55
NUP54Q7Z3B4 OR2A1-AS1-202ENST00000467944 422 ntBASIC5.39□□□□□ -1.55
NUP54Q7Z3B4 AC090058.1-201ENST00000498788 435 ntBASIC5.39□□□□□ -1.55
NUP54Q7Z3B4 AC008448.1-201ENST00000505109 584 ntTSL 5 BASIC5.39□□□□□ -1.55
NUP54Q7Z3B4 AC083923.2-202ENST00000517773 498 ntTSL 3 BASIC5.39□□□□□ -1.55
NUP54Q7Z3B4 IGKV2-19-201ENST00000518132 283 ntBASIC5.39□□□□□ -1.55
NUP54Q7Z3B4 AC091819.1-201ENST00000518330 630 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
NUP54Q7Z3B4 AP003501.1-201ENST00000524453 744 ntTSL 3 BASIC5.39□□□□□ -1.55
NUP54Q7Z3B4 AC103855.3-201ENST00000528445 606 ntTSL 5 BASIC5.39□□□□□ -1.55
NUP54Q7Z3B4 AP000763.3-201ENST00000542598 334 ntTSL 5 BASIC5.39□□□□□ -1.55
NUP54Q7Z3B4 AC090888.3-201ENST00000558917 509 ntBASIC5.39□□□□□ -1.55
NUP54Q7Z3B4 ZNF322P1-201ENST00000568013 1209 ntBASIC5.39□□□□□ -1.55
NUP54Q7Z3B4 TMEM159-205ENST00000572599 713 ntAPPRIS P1 TSL 5 BASIC5.39□□□□□ -1.55
NUP54Q7Z3B4 AC090844.2-201ENST00000578802 436 ntTSL 4 BASIC5.39□□□□□ -1.55
NUP54Q7Z3B4 MIR4260-201ENST00000583107 67 ntBASIC5.39□□□□□ -1.55
NUP54Q7Z3B4 AC098617.1-205ENST00000595918 1032 ntTSL 5 BASIC5.39□□□□□ -1.55
NUP54Q7Z3B4 AC003682.1-201ENST00000599190 462 ntTSL 2 BASIC5.39□□□□□ -1.55
NUP54Q7Z3B4 CLPS-202ENST00000616014 436 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
NUP54Q7Z3B4 LINC01358-205ENST00000625548 874 ntTSL 5 BASIC5.39□□□□□ -1.55
NUP54Q7Z3B4 5S_rRNA.28-201ENST00000638107 119 ntBASIC5.39□□□□□ -1.55
NUP54Q7Z3B4 UGP2-232ENST00000640075 567 ntTSL 5 BASIC5.39□□□□□ -1.55
NUP54Q7Z3B4 OR8G3P-202ENST00000641572 1255 ntBASIC5.39□□□□□ -1.55
NUP54Q7Z3B4 VWC2L-201ENST00000312504 4610 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
NUP54Q7Z3B4 AC015813.1-203ENST00000585065 4722 ntTSL 2 BASIC5.39□□□□□ -1.55
NUP54Q7Z3B4 KYNUP3-201ENST00000574386 1341 ntBASIC5.39□□□□□ -1.55
NUP54Q7Z3B4 ZNF493-202ENST00000355504 4386 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
NUP54Q7Z3B4 RALGAPA1-202ENST00000382366 6328 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
NUP54Q7Z3B4 CLVS1-203ENST00000518592 2880 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
NUP54Q7Z3B4 DCN-218ENST00000551354 2924 ntTSL 3 BASIC5.39□□□□□ -1.55
NUP54Q7Z3B4 DSC2-202ENST00000280904 12325 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
NUP54Q7Z3B4 EPB41L2-226ENST00000530757 4360 ntTSL 2 BASIC5.39□□□□□ -1.55
NUP54Q7Z3B4 PTPRZ1-201ENST00000393386 8175 ntAPPRIS P3 TSL 1 (best) BASIC5.39□□□□□ -1.55
NUP54Q7Z3B4 AC010329.2-201ENST00000595195 2737 ntBASIC5.39□□□□□ -1.55
NUP54Q7Z3B4 ARFGEF2-201ENST00000371917 8852 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
NUP54Q7Z3B4 RRP15-201ENST00000366932 7771 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
NUP54Q7Z3B4 PALMD-201ENST00000263174 2510 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
NUP54Q7Z3B4 AL138820.1-201ENST00000617901 5305 ntBASIC5.38□□□□□ -1.55
NUP54Q7Z3B4 FBXW12-201ENST00000296438 1647 ntAPPRIS P3 TSL 1 (best) BASIC5.38□□□□□ -1.55
NUP54Q7Z3B4 ALG2-202ENST00000319033 1627 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
NUP54Q7Z3B4 ATF7IP-214ENST00000540793 4142 ntAPPRIS P3 TSL 1 (best) BASIC5.38□□□□□ -1.55
NUP54Q7Z3B4 TRIM64B-201ENST00000329862 2689 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
NUP54Q7Z3B4 CLIP1-AS1-201ENST00000535976 1745 ntTSL 3 BASIC5.38□□□□□ -1.55
NUP54Q7Z3B4 KANTR-203ENST00000604062 4251 ntAPPRIS P1 TSL 5 BASIC5.38□□□□□ -1.55
NUP54Q7Z3B4 LYVE1-201ENST00000256178 3273 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
NUP54Q7Z3B4 IGF1-202ENST00000337514 7359 ntAPPRIS P3 TSL 1 (best) BASIC5.38□□□□□ -1.55
NUP54Q7Z3B4 SSX3-201ENST00000298396 1232 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
NUP54Q7Z3B4 OR6K2-201ENST00000359610 975 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
NUP54Q7Z3B4 RNU1-150P-201ENST00000362491 162 ntBASIC5.38□□□□□ -1.55
NUP54Q7Z3B4 MT-TP-201ENST00000387461 68 ntBASIC5.38□□□□□ -1.55
NUP54Q7Z3B4 VDAC2P1-201ENST00000399358 958 ntBASIC5.38□□□□□ -1.55
NUP54Q7Z3B4 OR7E101P-201ENST00000400428 513 ntBASIC5.38□□□□□ -1.55
NUP54Q7Z3B4 RN7SKP17-201ENST00000411242 351 ntBASIC5.38□□□□□ -1.55
NUP54Q7Z3B4 AC095032.2-201ENST00000414923 418 ntTSL 2 BASIC5.38□□□□□ -1.55
NUP54Q7Z3B4 AC011752.1-203ENST00000417609 582 ntTSL 2 BASIC5.38□□□□□ -1.55
NUP54Q7Z3B4 AC019205.1-201ENST00000421830 730 ntBASIC5.38□□□□□ -1.55
NUP54Q7Z3B4 AL590399.2-201ENST00000427536 309 ntBASIC5.38□□□□□ -1.55
NUP54Q7Z3B4 AL590623.1-201ENST00000427864 105 ntBASIC5.38□□□□□ -1.55
NUP54Q7Z3B4 PCBP2P1-201ENST00000437262 977 ntBASIC5.38□□□□□ -1.55
NUP54Q7Z3B4 MOB4-207ENST00000448447 1021 ntTSL 2 BASIC5.38□□□□□ -1.55
NUP54Q7Z3B4 AP006222.1-205ENST00000450734 457 ntBASIC5.38□□□□□ -1.55
NUP54Q7Z3B4 RPL10P17-201ENST00000453852 316 ntBASIC5.38□□□□□ -1.55
NUP54Q7Z3B4 HLA-DPA3-207ENST00000454398 229 ntBASIC5.38□□□□□ -1.55
NUP54Q7Z3B4 TAAR4P-201ENST00000454843 1039 ntBASIC5.38□□□□□ -1.55
NUP54Q7Z3B4 AC073486.1-202ENST00000458437 489 ntTSL 3 BASIC5.38□□□□□ -1.55
NUP54Q7Z3B4 GTPBP8-204ENST00000467752 686 ntTSL 5 BASIC5.38□□□□□ -1.55
NUP54Q7Z3B4 AC096741.1-201ENST00000472250 846 ntBASIC5.38□□□□□ -1.55
NUP54Q7Z3B4 RPL38P3-201ENST00000484463 213 ntBASIC5.38□□□□□ -1.55
NUP54Q7Z3B4 AC011396.3-201ENST00000508845 512 ntTSL 3 BASIC5.38□□□□□ -1.55
NUP54Q7Z3B4 AC006499.4-201ENST00000510947 694 ntBASIC5.38□□□□□ -1.55
NUP54Q7Z3B4 AC114781.3-201ENST00000512083 142 ntBASIC5.38□□□□□ -1.55
NUP54Q7Z3B4 HMGN2P36-201ENST00000529541 409 ntBASIC5.38□□□□□ -1.55
NUP54Q7Z3B4 AP003168.1-201ENST00000530091 307 ntBASIC5.38□□□□□ -1.55
NUP54Q7Z3B4 LINC02411-203ENST00000546180 959 ntTSL 4 BASIC5.38□□□□□ -1.55
NUP54Q7Z3B4 LINC02406-201ENST00000553029 546 ntTSL 3 BASIC5.38□□□□□ -1.55
NUP54Q7Z3B4 LINC02345-203ENST00000558897 405 ntTSL 3 BASIC5.38□□□□□ -1.55
NUP54Q7Z3B4 AC073964.1-201ENST00000558938 308 ntTSL 3 BASIC5.38□□□□□ -1.55
NUP54Q7Z3B4 AC009120.4-201ENST00000564455 513 ntTSL 5 BASIC5.38□□□□□ -1.55
NUP54Q7Z3B4 PINLYP-205ENST00000569031 557 ntTSL 2 BASIC5.38□□□□□ -1.55
NUP54Q7Z3B4 AC060780.2-201ENST00000589047 198 ntBASIC5.38□□□□□ -1.55
NUP54Q7Z3B4 AC022916.2-201ENST00000590144 559 ntTSL 4 BASIC5.38□□□□□ -1.55
NUP54Q7Z3B4 AC096553.1-201ENST00000605169 829 ntBASIC5.38□□□□□ -1.55
NUP54Q7Z3B4 CCL4-202ENST00000615863 904 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
NUP54Q7Z3B4 AP001153.1-201ENST00000641024 338 ntBASIC5.38□□□□□ -1.55
NUP54Q7Z3B4 GCSAML-206ENST00000527084 1308 ntAPPRIS ALT2 TSL 1 (best) BASIC5.38□□□□□ -1.55
NUP54Q7Z3B4 TRPM6-203ENST00000361255 8271 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
NUP54Q7Z3B4 DOCK4-AS1-201ENST00000452714 2494 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
NUP54Q7Z3B4 CLSPN-202ENST00000318121 4169 ntAPPRIS P3 TSL 1 (best) BASIC5.38□□□□□ -1.55
NUP54Q7Z3B4 NBPF20-203ENST00000594479 3670 ntTSL 5 BASIC5.38□□□□□ -1.55
NUP54Q7Z3B4 NBPF14-210ENST00000621066 3670 ntTSL 5 BASIC5.38□□□□□ -1.55
NUP54Q7Z3B4 GALNT13-202ENST00000409237 2591 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 80 ms