Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 AC007204.2-201ENST00000615022 616 ntBASIC5.13□□□□□ -1.59
LIM2P55344 Xist_exon4.1-201ENST00000615964 126 ntBASIC5.13□□□□□ -1.59
LIM2P55344 MILR1-204ENST00000616498 747 ntAPPRIS ALT2 TSL 1 (best) BASIC5.13□□□□□ -1.59
LIM2P55344 AC243654.3-201ENST00000617427 735 ntTSL 5 BASIC5.13□□□□□ -1.59
LIM2P55344 MIR4302-201ENST00000638058 60 ntBASIC5.13□□□□□ -1.59
LIM2P55344 RNF20-202ENST00000389120 3940 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
LIM2P55344 ELAVL4-205ENST00000371824 3966 ntAPPRIS P5 TSL 1 (best) BASIC5.13□□□□□ -1.59
LIM2P55344 DDX3Y-201ENST00000336079 4445 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
LIM2P55344 GABRA1-218ENST00000637827 1838 ntAPPRIS P1 TSL 5 BASIC5.13□□□□□ -1.59
LIM2P55344 SEC31A-204ENST00000355196 4104 ntAPPRIS P4 TSL 2 BASIC5.13□□□□□ -1.59
LIM2P55344 AC005154.1-228ENST00000454922 1405 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
LIM2P55344 VCAN-201ENST00000265077 12625 ntAPPRIS P3 TSL 1 (best) BASIC5.13□□□□□ -1.59
LIM2P55344 AC120036.2-201ENST00000509729 1474 ntBASIC5.13□□□□□ -1.59
LIM2P55344 CEPT1-211ENST00000615636 1966 ntTSL 5 BASIC5.13□□□□□ -1.59
LIM2P55344 FHL5-201ENST00000326771 2031 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
LIM2P55344 ART3-202ENST00000349321 1528 ntAPPRIS P3 TSL 1 (best) BASIC5.13□□□□□ -1.59
LIM2P55344 BCLAF1-201ENST00000353331 7110 ntTSL 5 BASIC5.13□□□□□ -1.59
LIM2P55344 AASDH-201ENST00000205214 3590 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
LIM2P55344 MAPK6PS2-201ENST00000379571 2060 ntBASIC5.12□□□□□ -1.59
LIM2P55344 LINC01541-202ENST00000568095 3105 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
LIM2P55344 LINC02203-203ENST00000625989 1600 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
LIM2P55344 RMST-209ENST00000639542 3269 ntTSL 5 BASIC5.12□□□□□ -1.59
LIM2P55344 KCNJ10-205ENST00000638728 4351 ntAPPRIS P1 TSL 5 BASIC5.12□□□□□ -1.59
LIM2P55344 IKZF2-207ENST00000434687 3888 ntAPPRIS P2 TSL 5 BASIC5.12□□□□□ -1.59
LIM2P55344 AL359538.1-201ENST00000453498 1710 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
LIM2P55344 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC5.12□□□□□ -1.59
LIM2P55344 SLC26A7-201ENST00000276609 5263 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
LIM2P55344 DCDC1-203ENST00000406071 4758 ntAPPRIS P2 TSL 5 BASIC5.12□□□□□ -1.59
LIM2P55344 OR12D3-201ENST00000396806 1869 ntAPPRIS P1 BASIC5.12□□□□□ -1.59
LIM2P55344 PRKAA1-204ENST00000397128 5088 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
LIM2P55344 MIR133B-201ENST00000362210 119 ntBASIC5.12□□□□□ -1.59
LIM2P55344 RNA5SP335-201ENST00000363817 110 ntBASIC5.12□□□□□ -1.59
LIM2P55344 DYDC1-202ENST00000372204 750 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
LIM2P55344 PLIN2-202ENST00000380464 655 ntTSL 2 BASIC5.12□□□□□ -1.59
LIM2P55344 U3.25-201ENST00000391209 220 ntBASIC5.12□□□□□ -1.59
LIM2P55344 OR3A2-201ENST00000408891 1076 ntBASIC5.12□□□□□ -1.59
LIM2P55344 HYALP1-201ENST00000417674 1279 ntBASIC5.12□□□□□ -1.59
LIM2P55344 AC092920.1-201ENST00000428516 678 ntTSL 5 BASIC5.12□□□□□ -1.59
LIM2P55344 ATP13A4-AS1-202ENST00000431512 394 ntTSL 3 BASIC5.12□□□□□ -1.59
LIM2P55344 AC068489.1-201ENST00000453706 261 ntTSL 5 BASIC5.12□□□□□ -1.59
LIM2P55344 AC092754.1-201ENST00000472975 479 ntBASIC5.12□□□□□ -1.59
LIM2P55344 RSRC1-207ENST00000475278 1195 ntTSL 5 BASIC5.12□□□□□ -1.59
LIM2P55344 LINC01365-202ENST00000512219 637 ntTSL 5 BASIC5.12□□□□□ -1.59
LIM2P55344 SPRY4-AS1-205ENST00000514303 152 ntTSL 3 BASIC5.12□□□□□ -1.59
LIM2P55344 SCARNA20.4-201ENST00000516969 131 ntBASIC5.12□□□□□ -1.59
LIM2P55344 AC068672.3-201ENST00000524017 824 ntTSL 3 BASIC5.12□□□□□ -1.59
LIM2P55344 ARL6IP1P3-201ENST00000524544 560 ntBASIC5.12□□□□□ -1.59
LIM2P55344 AP004607.2-201ENST00000533949 322 ntBASIC5.12□□□□□ -1.59
LIM2P55344 AC055874.1-201ENST00000561458 479 ntTSL 2 BASIC5.12□□□□□ -1.59
LIM2P55344 AC009113.2-201ENST00000563182 403 ntTSL 3 BASIC5.12□□□□□ -1.59
LIM2P55344 TTN-AS1-219ENST00000586707 834 ntTSL 5 BASIC5.12□□□□□ -1.59
LIM2P55344 GMFG-212ENST00000602185 423 ntTSL 3 BASIC5.12□□□□□ -1.59
LIM2P55344 AL713998.2-201ENST00000604538 1198 ntBASIC5.12□□□□□ -1.59
LIM2P55344 AL359513.1-201ENST00000614364 557 ntBASIC5.12□□□□□ -1.59
LIM2P55344 ZNF569-203ENST00000392150 1918 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
LIM2P55344 AL353796.1-201ENST00000561542 3241 ntBASIC5.12□□□□□ -1.59
LIM2P55344 KCNC4-201ENST00000369787 18750 ntAPPRIS P3 TSL 1 (best) BASIC5.12□□□□□ -1.59
LIM2P55344 IGF1-202ENST00000337514 7359 ntAPPRIS P3 TSL 1 (best) BASIC5.12□□□□□ -1.59
LIM2P55344 ZNF567-203ENST00000585696 3734 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
LIM2P55344 RGS17-202ENST00000367225 7773 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
LIM2P55344 PTK2-213ENST00000519465 3279 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
LIM2P55344 AC004158.1-201ENST00000564508 4319 ntBASIC5.11□□□□□ -1.59
LIM2P55344 LMO3-225ENST00000541295 3498 ntTSL 2 BASIC5.11□□□□□ -1.59
LIM2P55344 AC021074.3-201ENST00000476385 1825 ntTSL 2 BASIC5.11□□□□□ -1.59
LIM2P55344 NPSR1-AS1-202ENST00000419766 4821 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
LIM2P55344 MCM9-209ENST00000619706 4822 ntAPPRIS P1 TSL 5 BASIC5.11□□□□□ -1.59
LIM2P55344 ZNF224-201ENST00000336976 3980 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
LIM2P55344 HMMR-203ENST00000393915 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC5.11□□□□□ -1.59
LIM2P55344 DNM3OS-201ENST00000417354 4358 ntTSL 4 BASIC5.11□□□□□ -1.59
LIM2P55344 OR2H1-201ENST00000377132 2253 ntAPPRIS P1 BASIC5.11□□□□□ -1.59
LIM2P55344 GPR1-201ENST00000407325 2295 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
LIM2P55344 ZFX-211ENST00000539115 6801 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
LIM2P55344 SEC31A-217ENST00000505984 3596 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
LIM2P55344 MYO5A-201ENST00000356338 11971 ntAPPRIS ALT1 TSL 1 (best) BASIC5.11□□□□□ -1.59
LIM2P55344 ZNF26-201ENST00000328654 17601 ntAPPRIS P3 TSL 1 (best) BASIC5.11□□□□□ -1.59
LIM2P55344 SPRR2G-201ENST00000368748 568 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
LIM2P55344 AL050305.1-201ENST00000399993 1230 ntBASIC5.11□□□□□ -1.59
LIM2P55344 DBIP1-201ENST00000401435 260 ntBASIC5.11□□□□□ -1.59
LIM2P55344 NPM1P38-201ENST00000403835 865 ntBASIC5.11□□□□□ -1.59
LIM2P55344 AL133388.1-201ENST00000404509 287 ntBASIC5.11□□□□□ -1.59
LIM2P55344 PPP2R2DP1-201ENST00000420526 637 ntBASIC5.11□□□□□ -1.59
LIM2P55344 PQLC2L-202ENST00000426338 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC5.11□□□□□ -1.59
LIM2P55344 AL136231.1-201ENST00000429407 730 ntBASIC5.11□□□□□ -1.59
LIM2P55344 OR6C71P-201ENST00000432580 913 ntBASIC5.11□□□□□ -1.59
LIM2P55344 CYCSP12-201ENST00000437729 300 ntBASIC5.11□□□□□ -1.59
LIM2P55344 AL122019.1-201ENST00000438575 798 ntTSL 3 BASIC5.11□□□□□ -1.59
LIM2P55344 LINC02038-201ENST00000439074 702 ntTSL 4 BASIC5.11□□□□□ -1.59
LIM2P55344 AL442224.1-201ENST00000443771 391 ntTSL 2 BASIC5.11□□□□□ -1.59
LIM2P55344 MTCO3P17-201ENST00000443775 513 ntBASIC5.11□□□□□ -1.59
LIM2P55344 LINC02541-202ENST00000452675 465 ntTSL 5 BASIC5.11□□□□□ -1.59
LIM2P55344 AL035090.1-201ENST00000454835 332 ntBASIC5.11□□□□□ -1.59
LIM2P55344 AC007386.1-201ENST00000455212 582 ntBASIC5.11□□□□□ -1.59
LIM2P55344 RPL7P45-201ENST00000455851 743 ntBASIC5.11□□□□□ -1.59
LIM2P55344 AP006216.2-201ENST00000457746 333 ntTSL 5 BASIC5.11□□□□□ -1.59
LIM2P55344 AC090602.1-201ENST00000469695 252 ntBASIC5.11□□□□□ -1.59
LIM2P55344 CR383656.1-201ENST00000484916 377 ntBASIC5.11□□□□□ -1.59
LIM2P55344 AC108693.1-201ENST00000496068 432 ntBASIC5.11□□□□□ -1.59
LIM2P55344 THAP6-212ENST00000508105 1103 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
LIM2P55344 AC021193.1-201ENST00000511607 420 ntBASIC5.11□□□□□ -1.59
LIM2P55344 LINC02117-201ENST00000513673 540 ntTSL 4 BASIC5.11□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 87.2 ms