Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 AC079896.1-201ENST00000455845 488 ntTSL 3 BASIC10.38□□□□□ -0.75
SHROOM4Q9ULL8 AC026434.1-201ENST00000511474 454 ntTSL 3 BASIC10.38□□□□□ -0.75
SHROOM4Q9ULL8 AP001972.1-201ENST00000529215 506 ntTSL 2 BASIC10.38□□□□□ -0.75
SHROOM4Q9ULL8 CA1-224ENST00000542576 1236 ntAPPRIS P1 TSL 5 BASIC10.38□□□□□ -0.75
SHROOM4Q9ULL8 AC078814.2-201ENST00000552996 535 ntTSL 4 BASIC10.38□□□□□ -0.75
SHROOM4Q9ULL8 AC092078.1-201ENST00000558370 325 ntTSL 3 BASIC10.38□□□□□ -0.75
SHROOM4Q9ULL8 LINC02345-203ENST00000558897 405 ntTSL 3 BASIC10.38□□□□□ -0.75
SHROOM4Q9ULL8 AC091117.1-201ENST00000560967 426 ntTSL 5 BASIC10.38□□□□□ -0.75
SHROOM4Q9ULL8 AC068790.7-201ENST00000602347 528 ntBASIC10.38□□□□□ -0.75
SHROOM4Q9ULL8 AC083809.1-201ENST00000615051 472 ntBASIC10.38□□□□□ -0.75
SHROOM4Q9ULL8 AC068631.1-223ENST00000625877 472 ntTSL 5 BASIC10.38□□□□□ -0.75
SHROOM4Q9ULL8 LINC02342-201ENST00000627910 461 ntTSL 5 BASIC10.38□□□□□ -0.75
SHROOM4Q9ULL8 PTPRO-210ENST00000544244 3978 ntAPPRIS ALT2 TSL 2 BASIC10.38□□□□□ -0.75
SHROOM4Q9ULL8 GRAMD2B-202ENST00000502348 1363 ntTSL 2 BASIC10.38□□□□□ -0.75
SHROOM4Q9ULL8 CALU-203ENST00000479257 2572 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
SHROOM4Q9ULL8 CLCA1-201ENST00000234701 3310 ntAPPRIS P1 TSL 1 (best) BASIC10.38□□□□□ -0.75
SHROOM4Q9ULL8 ZC3H14-205ENST00000393514 2195 ntTSL 5 BASIC10.38□□□□□ -0.75
SHROOM4Q9ULL8 ATP5A1P4-201ENST00000556888 1605 ntBASIC10.38□□□□□ -0.75
SHROOM4Q9ULL8 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC10.38□□□□□ -0.75
SHROOM4Q9ULL8 SLC12A1-201ENST00000330289 1764 ntTSL 1 (best) BASIC10.38□□□□□ -0.75
SHROOM4Q9ULL8 MIPEPP2-201ENST00000422560 1819 ntBASIC10.38□□□□□ -0.75
SHROOM4Q9ULL8 DOCK9-216ENST00000627024 4096 ntTSL 2 BASIC10.37□□□□□ -0.75
SHROOM4Q9ULL8 CHMP1B2P-201ENST00000399581 597 ntBASIC10.37□□□□□ -0.75
SHROOM4Q9ULL8 AC093162.1-201ENST00000419682 124 ntBASIC10.37□□□□□ -0.75
SHROOM4Q9ULL8 PPP2R2DP1-201ENST00000420526 637 ntBASIC10.37□□□□□ -0.75
SHROOM4Q9ULL8 DDX39BP1-205ENST00000422507 192 ntBASIC10.37□□□□□ -0.75
SHROOM4Q9ULL8 AC007161.1-204ENST00000423039 460 ntBASIC10.37□□□□□ -0.75
SHROOM4Q9ULL8 RPL5P16-201ENST00000471467 790 ntBASIC10.37□□□□□ -0.75
SHROOM4Q9ULL8 AC008448.1-201ENST00000505109 584 ntTSL 5 BASIC10.37□□□□□ -0.75
SHROOM4Q9ULL8 AC009623.1-201ENST00000517964 1131 ntTSL 2 BASIC10.37□□□□□ -0.75
SHROOM4Q9ULL8 AC008738.1-201ENST00000590117 375 ntTSL 5 BASIC10.37□□□□□ -0.75
SHROOM4Q9ULL8 AL133481.2-203ENST00000607558 139 ntBASIC10.37□□□□□ -0.75
SHROOM4Q9ULL8 AL353770.4-201ENST00000614936 468 ntTSL 5 BASIC10.37□□□□□ -0.75
SHROOM4Q9ULL8 AL590491.2-203ENST00000614969 468 ntTSL 4 BASIC10.37□□□□□ -0.75
SHROOM4Q9ULL8 CYP4F35P-202ENST00000636121 390 ntBASIC10.37□□□□□ -0.75
SHROOM4Q9ULL8 PLCXD3-202ENST00000377801 7704 ntAPPRIS P1 TSL 1 (best) BASIC10.37□□□□□ -0.75
SHROOM4Q9ULL8 PAK3-203ENST00000372007 8940 ntAPPRIS P3 TSL 1 (best) BASIC10.37□□□□□ -0.75
SHROOM4Q9ULL8 PAK3-202ENST00000360648 2241 ntTSL 1 (best) BASIC10.37□□□□□ -0.75
SHROOM4Q9ULL8 AC134980.1-209ENST00000639059 2317 ntTSL 2 BASIC10.37□□□□□ -0.75
SHROOM4Q9ULL8 AL353625.1-202ENST00000366273 571 ntBASIC10.36□□□□□ -0.75
SHROOM4Q9ULL8 AC068538.1-201ENST00000376856 336 ntBASIC10.36□□□□□ -0.75
SHROOM4Q9ULL8 RPS16P5-201ENST00000406501 404 ntBASIC10.36□□□□□ -0.75
SHROOM4Q9ULL8 C4BPAP2-201ENST00000428434 478 ntBASIC10.36□□□□□ -0.75
SHROOM4Q9ULL8 AC068587.1-201ENST00000483613 781 ntBASIC10.36□□□□□ -0.75
SHROOM4Q9ULL8 RN7SKP253-201ENST00000516424 309 ntBASIC10.36□□□□□ -0.75
SHROOM4Q9ULL8 AC006115.2-201ENST00000596823 202 ntBASIC10.36□□□□□ -0.75
SHROOM4Q9ULL8 AC022960.2-201ENST00000616300 666 ntBASIC10.36□□□□□ -0.75
SHROOM4Q9ULL8 GPAM-202ENST00000369425 5664 ntTSL 1 (best) BASIC10.36□□□□□ -0.75
SHROOM4Q9ULL8 DDX6-208ENST00000620157 6152 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.75
SHROOM4Q9ULL8 NF1-201ENST00000356175 12362 ntAPPRIS P3 TSL 1 (best) BASIC10.36□□□□□ -0.75
SHROOM4Q9ULL8 SNURFL-201ENST00000309296 343 ntBASIC10.36□□□□□ -0.75
SHROOM4Q9ULL8 SNORD1C-201ENST00000363315 78 ntBASIC10.36□□□□□ -0.75
SHROOM4Q9ULL8 RNU1-43P-201ENST00000365052 165 ntBASIC10.36□□□□□ -0.75
SHROOM4Q9ULL8 SNORA51.8-201ENST00000384234 132 ntBASIC10.36□□□□□ -0.75
SHROOM4Q9ULL8 RNF212B-201ENST00000399905 1071 ntTSL 5 BASIC10.36□□□□□ -0.75
SHROOM4Q9ULL8 C9orf57-202ENST00000424431 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC10.36□□□□□ -0.75
SHROOM4Q9ULL8 NFYAP1-201ENST00000431953 972 ntBASIC10.36□□□□□ -0.75
SHROOM4Q9ULL8 ZDHHC20P1-204ENST00000435787 423 ntBASIC10.36□□□□□ -0.75
SHROOM4Q9ULL8 RPL31P44-201ENST00000447680 377 ntBASIC10.36□□□□□ -0.75
SHROOM4Q9ULL8 AC091153.1-201ENST00000466297 402 ntBASIC10.36□□□□□ -0.75
SHROOM4Q9ULL8 SEC22A-207ENST00000481965 673 ntTSL 3 BASIC10.36□□□□□ -0.75
SHROOM4Q9ULL8 RN7SKP147-201ENST00000517154 244 ntBASIC10.36□□□□□ -0.75
SHROOM4Q9ULL8 AP003501.1-201ENST00000524453 744 ntTSL 3 BASIC10.36□□□□□ -0.75
SHROOM4Q9ULL8 AP001266.2-201ENST00000534505 464 ntTSL 4 BASIC10.36□□□□□ -0.75
SHROOM4Q9ULL8 AC137627.1-201ENST00000545761 289 ntBASIC10.36□□□□□ -0.75
SHROOM4Q9ULL8 EDDM3DP-201ENST00000554692 434 ntBASIC10.36□□□□□ -0.75
SHROOM4Q9ULL8 AC109460.2-201ENST00000569974 544 ntTSL 3 BASIC10.36□□□□□ -0.75
SHROOM4Q9ULL8 AC005757.1-201ENST00000591432 472 ntTSL 4 BASIC10.36□□□□□ -0.75
SHROOM4Q9ULL8 PRUNE2-201ENST00000223609 2697 ntTSL 2 BASIC10.35□□□□□ -0.75
SHROOM4Q9ULL8 PLCE1-201ENST00000371375 6514 ntAPPRIS ALT2 TSL 1 (best) BASIC10.35□□□□□ -0.75
SHROOM4Q9ULL8 TMPRSS11BNL-202ENST00000510782 3202 ntTSL 2 BASIC10.35□□□□□ -0.75
SHROOM4Q9ULL8 IQCM-206ENST00000636793 1900 ntAPPRIS P5 TSL 5 BASIC10.35□□□□□ -0.75
SHROOM4Q9ULL8 TDO2-208ENST00000536354 1701 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
SHROOM4Q9ULL8 ADNP-202ENST00000371602 6115 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
SHROOM4Q9ULL8 ZNF337-AS1-201ENST00000414393 4666 ntTSL 2 BASIC10.35□□□□□ -0.75
SHROOM4Q9ULL8 CSMD2-210ENST00000619121 13430 ntAPPRIS ALT2 TSL 5 BASIC10.35□□□□□ -0.75
SHROOM4Q9ULL8 AC126755.2-208ENST00000327792 462 ntBASIC10.35□□□□□ -0.75
SHROOM4Q9ULL8 AC138969.1-213ENST00000331436 462 ntBASIC10.35□□□□□ -0.75
SHROOM4Q9ULL8 RN7SKP6-201ENST00000364795 319 ntBASIC10.35□□□□□ -0.75
SHROOM4Q9ULL8 MIR551A-201ENST00000385042 96 ntBASIC10.35□□□□□ -0.75
SHROOM4Q9ULL8 RPL31-205ENST00000409320 716 ntAPPRIS ALT1 TSL 1 (best) BASIC10.35□□□□□ -0.75
SHROOM4Q9ULL8 AL672138.1-201ENST00000450604 1015 ntBASIC10.35□□□□□ -0.75
SHROOM4Q9ULL8 MEMO1P4-201ENST00000453590 386 ntBASIC10.35□□□□□ -0.75
SHROOM4Q9ULL8 LINC01456-201ENST00000453902 708 ntTSL 3 BASIC10.35□□□□□ -0.75
SHROOM4Q9ULL8 snoU109.5-201ENST00000516231 132 ntBASIC10.35□□□□□ -0.75
SHROOM4Q9ULL8 VNN2-207ENST00000525289 900 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
SHROOM4Q9ULL8 TRPT1-216ENST00000546133 382 ntTSL 2 BASIC10.35□□□□□ -0.75
SHROOM4Q9ULL8 AC015727.1-201ENST00000572792 512 ntTSL 5 BASIC10.35□□□□□ -0.75
SHROOM4Q9ULL8 AC060766.1-201ENST00000590824 627 ntBASIC10.35□□□□□ -0.75
SHROOM4Q9ULL8 AL133406.3-201ENST00000606817 541 ntBASIC10.35□□□□□ -0.75
SHROOM4Q9ULL8 AC105265.3-202ENST00000610188 459 ntTSL 5 BASIC10.35□□□□□ -0.75
SHROOM4Q9ULL8 OR5D13-201ENST00000623930 945 ntAPPRIS P1 BASIC10.35□□□□□ -0.75
SHROOM4Q9ULL8 TTC26-203ENST00000464848 4299 ntAPPRIS P1 TSL 1 (best) BASIC10.35□□□□□ -0.75
SHROOM4Q9ULL8 CAPRIN2-202ENST00000395805 4156 ntTSL 1 (best) BASIC10.35□□□□□ -0.75
SHROOM4Q9ULL8 CLCA1-202ENST00000394711 3118 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.75
SHROOM4Q9ULL8 NBPF26-201ENST00000609741 3671 ntTSL 5 BASIC10.34□□□□□ -0.75
SHROOM4Q9ULL8 AC115220.1-201ENST00000330020 1453 ntAPPRIS P1 TSL 3 BASIC10.34□□□□□ -0.75
SHROOM4Q9ULL8 SELE-205ENST00000367777 3576 ntTSL 5 BASIC10.34□□□□□ -0.75
SHROOM4Q9ULL8 COX6B1P1-201ENST00000415962 213 ntBASIC10.34□□□□□ -0.75
SHROOM4Q9ULL8 AL133482.1-201ENST00000415988 498 ntBASIC10.34□□□□□ -0.75
Retrieved 100 of 98,524 protein–RNA pairs in 95.6 ms