Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 HNF4G-203ENST00000396423 4209 ntAPPRIS P3 TSL 1 (best) BASIC5.5□□□□□ -1.53
CCDC3Q9BQI4 ASXL3-201ENST00000269197 11399 ntAPPRIS P2 TSL 5 BASIC5.5□□□□□ -1.53
CCDC3Q9BQI4 OOSP2-201ENST00000278855 1633 ntAPPRIS P2 TSL 1 (best) BASIC5.5□□□□□ -1.53
CCDC3Q9BQI4 OR8H3-201ENST00000313472 939 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
CCDC3Q9BQI4 RN7SKP28-201ENST00000364770 305 ntBASIC5.5□□□□□ -1.53
CCDC3Q9BQI4 BTBD9-203ENST00000403056 1155 ntTSL 5 BASIC5.5□□□□□ -1.53
CCDC3Q9BQI4 AL445190.1-201ENST00000416448 288 ntTSL 5 BASIC5.5□□□□□ -1.53
CCDC3Q9BQI4 AC007394.1-201ENST00000421941 531 ntBASIC5.5□□□□□ -1.53
CCDC3Q9BQI4 AL390243.1-201ENST00000422038 708 ntTSL 2 BASIC5.5□□□□□ -1.53
CCDC3Q9BQI4 VN1R21P-201ENST00000426703 765 ntBASIC5.5□□□□□ -1.53
CCDC3Q9BQI4 CRIP1P1-201ENST00000427567 185 ntBASIC5.5□□□□□ -1.53
CCDC3Q9BQI4 AC073410.1-201ENST00000435125 589 ntBASIC5.5□□□□□ -1.53
CCDC3Q9BQI4 OR6C72P-201ENST00000451403 892 ntBASIC5.5□□□□□ -1.53
CCDC3Q9BQI4 LINC01456-201ENST00000453902 708 ntTSL 3 BASIC5.5□□□□□ -1.53
CCDC3Q9BQI4 AC105021.1-201ENST00000455347 590 ntTSL 3 BASIC5.5□□□□□ -1.53
CCDC3Q9BQI4 RPL7P39-201ENST00000481157 744 ntBASIC5.5□□□□□ -1.53
CCDC3Q9BQI4 RNA5SP92-201ENST00000516437 110 ntBASIC5.5□□□□□ -1.53
CCDC3Q9BQI4 AF117829.1-208ENST00000521996 915 ntTSL 3 BASIC5.5□□□□□ -1.53
CCDC3Q9BQI4 AP001970.1-201ENST00000531681 701 ntTSL 3 BASIC5.5□□□□□ -1.53
CCDC3Q9BQI4 OR10G5P-201ENST00000532733 358 ntBASIC5.5□□□□□ -1.53
CCDC3Q9BQI4 AL049874.4-201ENST00000557593 255 ntBASIC5.5□□□□□ -1.53
CCDC3Q9BQI4 MORF4L1-205ENST00000558502 855 ntTSL 3 BASIC5.5□□□□□ -1.53
CCDC3Q9BQI4 AC026462.4-201ENST00000565229 951 ntTSL 3 BASIC5.5□□□□□ -1.53
CCDC3Q9BQI4 LINC01835-202ENST00000589345 450 ntTSL 3 BASIC5.5□□□□□ -1.53
CCDC3Q9BQI4 AC006115.2-201ENST00000596823 202 ntBASIC5.5□□□□□ -1.53
CCDC3Q9BQI4 AL513327.3-201ENST00000602618 469 ntBASIC5.5□□□□□ -1.53
CCDC3Q9BQI4 AL163952.1-201ENST00000612704 916 ntTSL 5 BASIC5.5□□□□□ -1.53
CCDC3Q9BQI4 SAMMSON-227ENST00000642114 1199 ntBASIC5.5□□□□□ -1.53
CCDC3Q9BQI4 HEPHL1-201ENST00000315765 5345 ntAPPRIS P1 TSL 5 BASIC5.5□□□□□ -1.53
CCDC3Q9BQI4 ADGRL2-222ENST00000627151 5789 ntTSL 5 BASIC5.5□□□□□ -1.53
CCDC3Q9BQI4 ZNF101P1-201ENST00000435701 1720 ntBASIC5.5□□□□□ -1.53
CCDC3Q9BQI4 ZBTB38-202ENST00000441582 3662 ntAPPRIS P1 TSL 2 BASIC5.5□□□□□ -1.53
CCDC3Q9BQI4 INO80D-201ENST00000403263 14136 ntAPPRIS P1 TSL 5 BASIC5.5□□□□□ -1.53
CCDC3Q9BQI4 AL592429.1-201ENST00000403909 1473 ntBASIC5.5□□□□□ -1.53
CCDC3Q9BQI4 EPC2-201ENST00000258484 3649 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
CCDC3Q9BQI4 RALGAPB-202ENST00000397040 8435 ntAPPRIS P3 TSL 1 (best) BASIC5.5□□□□□ -1.53
CCDC3Q9BQI4 C15orf41-201ENST00000338183 2578 ntTSL 5 BASIC5.5□□□□□ -1.53
CCDC3Q9BQI4 PCDH15-201ENST00000320301 6845 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
CCDC3Q9BQI4 ZNF345-215ENST00000614069 3103 ntAPPRIS P1 TSL 3 BASIC5.5□□□□□ -1.53
CCDC3Q9BQI4 DLGAP5-202ENST00000395425 2954 ntAPPRIS ALT2 TSL 1 (best) BASIC5.49□□□□□ -1.53
CCDC3Q9BQI4 AC005261.2-201ENST00000593427 4258 ntBASIC5.49□□□□□ -1.53
CCDC3Q9BQI4 MYBPC1-209ENST00000547509 3749 ntAPPRIS ALT2 TSL 5 BASIC5.49□□□□□ -1.53
CCDC3Q9BQI4 HUWE1-214ENST00000612484 14311 ntTSL 5 BASIC5.49□□□□□ -1.53
CCDC3Q9BQI4 AC053481.2-202ENST00000582394 1500 ntBASIC5.49□□□□□ -1.53
CCDC3Q9BQI4 TOR1AIP1-202ENST00000435319 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC5.49□□□□□ -1.53
CCDC3Q9BQI4 ZNF615-201ENST00000376716 4048 ntAPPRIS P3 TSL 2 BASIC5.49□□□□□ -1.53
CCDC3Q9BQI4 NOSTRIN-201ENST00000317647 2294 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
CCDC3Q9BQI4 EXPH5-201ENST00000265843 10187 ntAPPRIS P3 TSL 1 (best) BASIC5.49□□□□□ -1.53
CCDC3Q9BQI4 ZNF704-201ENST00000327835 14386 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
CCDC3Q9BQI4 MCMDC2-204ENST00000422365 5096 ntAPPRIS P1 TSL 2 BASIC5.49□□□□□ -1.53
CCDC3Q9BQI4 DSE-204ENST00000452085 10586 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
CCDC3Q9BQI4 KRT222-202ENST00000394052 1712 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
CCDC3Q9BQI4 ZNF724-201ENST00000418100 2764 ntAPPRIS P1 TSL 2 BASIC5.49□□□□□ -1.53
CCDC3Q9BQI4 AL158064.2-203ENST00000639897 2003 ntTSL 5 BASIC5.49□□□□□ -1.53
CCDC3Q9BQI4 SPATA1-206ENST00000490879 2888 ntAPPRIS P1 TSL 5 BASIC5.49□□□□□ -1.53
CCDC3Q9BQI4 RN7SKP186-201ENST00000365371 303 ntBASIC5.49□□□□□ -1.53
CCDC3Q9BQI4 RNA5SP30-201ENST00000365552 115 ntBASIC5.49□□□□□ -1.53
CCDC3Q9BQI4 RNU4-2-201ENST00000365668 141 ntBASIC5.49□□□□□ -1.53
CCDC3Q9BQI4 GNG5P2-201ENST00000372054 207 ntBASIC5.49□□□□□ -1.53
CCDC3Q9BQI4 TRAV8-7-201ENST00000390456 341 ntAPPRIS P1 BASIC5.49□□□□□ -1.53
CCDC3Q9BQI4 MRM2-202ENST00000407040 582 ntTSL 3 BASIC5.49□□□□□ -1.53
CCDC3Q9BQI4 AL020994.2-201ENST00000413244 571 ntTSL 4 BASIC5.49□□□□□ -1.53
CCDC3Q9BQI4 RPS26P38-201ENST00000414476 348 ntBASIC5.49□□□□□ -1.53
CCDC3Q9BQI4 NENFP1-201ENST00000419476 466 ntBASIC5.49□□□□□ -1.53
CCDC3Q9BQI4 TSSK4-203ENST00000428351 576 ntTSL 2 BASIC5.49□□□□□ -1.53
CCDC3Q9BQI4 AC117944.1-201ENST00000430748 641 ntTSL 3 BASIC5.49□□□□□ -1.53
CCDC3Q9BQI4 AL713851.2-201ENST00000431209 332 ntTSL 2 BASIC5.49□□□□□ -1.53
CCDC3Q9BQI4 PTMAP6-201ENST00000439110 327 ntBASIC5.49□□□□□ -1.53
CCDC3Q9BQI4 AC090638.1-201ENST00000498296 909 ntBASIC5.49□□□□□ -1.53
CCDC3Q9BQI4 HIGD1AP14-201ENST00000507617 282 ntBASIC5.49□□□□□ -1.53
CCDC3Q9BQI4 LINC02147-201ENST00000509367 807 ntTSL 2 BASIC5.49□□□□□ -1.53
CCDC3Q9BQI4 AC063979.2-201ENST00000513767 958 ntTSL 5 BASIC5.49□□□□□ -1.53
CCDC3Q9BQI4 AC090572.2-201ENST00000520649 761 ntTSL 3 BASIC5.49□□□□□ -1.53
CCDC3Q9BQI4 AC103855.3-201ENST00000528445 606 ntTSL 5 BASIC5.49□□□□□ -1.53
CCDC3Q9BQI4 CDKN3-206ENST00000541304 1070 ntTSL 2 BASIC5.49□□□□□ -1.53
CCDC3Q9BQI4 AC024224.2-201ENST00000544225 782 ntTSL 3 BASIC5.49□□□□□ -1.53
CCDC3Q9BQI4 AC078820.1-201ENST00000548702 742 ntTSL 3 BASIC5.49□□□□□ -1.53
CCDC3Q9BQI4 AC091544.7-201ENST00000554000 240 ntTSL 3 BASIC5.49□□□□□ -1.53
CCDC3Q9BQI4 AC023906.4-201ENST00000557898 895 ntTSL 3 BASIC5.49□□□□□ -1.53
CCDC3Q9BQI4 AC090403.1-202ENST00000582108 833 ntTSL 3 BASIC5.49□□□□□ -1.53
CCDC3Q9BQI4 AC022098.3-201ENST00000590715 315 ntTSL 3 BASIC5.49□□□□□ -1.53
CCDC3Q9BQI4 AL512329.2-201ENST00000607350 548 ntBASIC5.49□□□□□ -1.53
CCDC3Q9BQI4 Z98949.1-220ENST00000609809 804 ntTSL 5 BASIC5.49□□□□□ -1.53
CCDC3Q9BQI4 AP000904.1-201ENST00000609911 951 ntTSL 3 BASIC5.49□□□□□ -1.53
CCDC3Q9BQI4 AC132068.1-201ENST00000623805 459 ntBASIC5.49□□□□□ -1.53
CCDC3Q9BQI4 METTL15-211ENST00000634762 718 ntTSL 5 BASIC5.49□□□□□ -1.53
CCDC3Q9BQI4 AASDH-203ENST00000502617 3004 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
CCDC3Q9BQI4 CUL4AP1-201ENST00000514750 1863 ntBASIC5.49□□□□□ -1.53
CCDC3Q9BQI4 CLCN3-201ENST00000347613 3635 ntAPPRIS P4 TSL 1 (best) BASIC5.49□□□□□ -1.53
CCDC3Q9BQI4 FAM205A-201ENST00000378788 4225 ntAPPRIS P1 TSL 2 BASIC5.49□□□□□ -1.53
CCDC3Q9BQI4 ADGRG2-203ENST00000356606 4630 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
CCDC3Q9BQI4 MAP2-205ENST00000392194 5303 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
CCDC3Q9BQI4 OR9Q2-202ENST00000641291 3774 ntAPPRIS P1 BASIC5.49□□□□□ -1.53
CCDC3Q9BQI4 CADM2-202ENST00000405615 1314 ntAPPRIS P3 TSL 1 (best) BASIC5.48□□□□□ -1.53
CCDC3Q9BQI4 LINC01568-202ENST00000555721 1325 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
CCDC3Q9BQI4 AL929601.4-201ENST00000613011 1341 ntBASIC5.48□□□□□ -1.53
CCDC3Q9BQI4 C4orf17-201ENST00000326581 1636 ntAPPRIS P2 TSL 1 (best) BASIC5.48□□□□□ -1.53
CCDC3Q9BQI4 GDNF-AS1-202ENST00000510986 1941 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
CCDC3Q9BQI4 ZBTB8A-202ENST00000373510 7075 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
CCDC3Q9BQI4 TTI1-203ENST00000449821 3791 ntAPPRIS P1 TSL 2 BASIC5.48□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 129.1 ms