Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 LINC00701-201ENST00000418295 742 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
FOXA1P55317 IPPKP1-201ENST00000422501 768 ntBASIC5.13□□□□□ -1.59
FOXA1P55317 TNPO1P1-201ENST00000423641 1138 ntBASIC5.13□□□□□ -1.59
FOXA1P55317 AL356056.1-206ENST00000424615 407 ntTSL 5 BASIC5.13□□□□□ -1.59
FOXA1P55317 ARPP21-215ENST00000432682 1015 ntTSL 5 BASIC5.13□□□□□ -1.59
FOXA1P55317 VAV3-AS1-201ENST00000438318 619 ntTSL 2 BASIC5.13□□□□□ -1.59
FOXA1P55317 AF064858.2-201ENST00000440714 292 ntTSL 3 BASIC5.13□□□□□ -1.59
FOXA1P55317 BX546450.1-201ENST00000454307 482 ntTSL 2 BASIC5.13□□□□□ -1.59
FOXA1P55317 RANP1-206ENST00000455094 651 ntBASIC5.13□□□□□ -1.59
FOXA1P55317 RN7SL423P-201ENST00000486202 304 ntBASIC5.13□□□□□ -1.59
FOXA1P55317 AL049874.2-201ENST00000492636 288 ntBASIC5.13□□□□□ -1.59
FOXA1P55317 AC022360.1-201ENST00000521058 340 ntBASIC5.13□□□□□ -1.59
FOXA1P55317 MOCS2-208ENST00000527216 707 ntTSL 3 BASIC5.13□□□□□ -1.59
FOXA1P55317 ANP32E-205ENST00000533654 908 ntTSL 2 BASIC5.13□□□□□ -1.59
FOXA1P55317 AC090888.3-201ENST00000558917 509 ntBASIC5.13□□□□□ -1.59
FOXA1P55317 AC026464.3-201ENST00000563634 564 ntAPPRIS P1 TSL 4 BASIC5.13□□□□□ -1.59
FOXA1P55317 AC114947.2-201ENST00000565748 2125 ntBASIC5.13□□□□□ -1.59
FOXA1P55317 RBM22P1-201ENST00000578589 1214 ntBASIC5.13□□□□□ -1.59
FOXA1P55317 AC005726.4-201ENST00000582858 458 ntBASIC5.13□□□□□ -1.59
FOXA1P55317 UBA2-208ENST00000592791 910 ntTSL 2 BASIC5.13□□□□□ -1.59
FOXA1P55317 GMFG-202ENST00000594700 397 ntTSL 2 BASIC5.13□□□□□ -1.59
FOXA1P55317 UBE2E3-208ENST00000602632 446 ntTSL 2 BASIC5.13□□□□□ -1.59
FOXA1P55317 AL162431.4-201ENST00000604674 411 ntBASIC5.13□□□□□ -1.59
FOXA1P55317 ZNF525-202ENST00000474037 3890 ntAPPRIS P1 TSL 5 BASIC5.13□□□□□ -1.59
FOXA1P55317 KCNH5-201ENST00000322893 11290 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
FOXA1P55317 FOXP1-IT1-201ENST00000498714 3539 ntTSL 2 BASIC5.13□□□□□ -1.59
FOXA1P55317 ARHGAP5-206ENST00000539826 4881 ntAPPRIS P3 TSL 1 (best) BASIC5.13□□□□□ -1.59
FOXA1P55317 RIMS2-209ENST00000507740 8002 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
FOXA1P55317 VPS41-203ENST00000395969 3181 ntTSL 5 BASIC5.13□□□□□ -1.59
FOXA1P55317 AC011604.2-201ENST00000381541 2268 ntAPPRIS ALT2 TSL 2 BASIC5.13□□□□□ -1.59
FOXA1P55317 NCOA3-203ENST00000372004 7939 ntAPPRIS ALT2 TSL 1 (best) BASIC5.13□□□□□ -1.59
FOXA1P55317 SYNJ2BP-201ENST00000256366 7015 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
FOXA1P55317 IKZF3-213ENST00000439167 1879 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
FOXA1P55317 OR9K1P-202ENST00000641111 3217 ntBASIC5.12□□□□□ -1.59
FOXA1P55317 ZEB1-219ENST00000560721 3368 ntAPPRIS ALT2 TSL 2 BASIC5.12□□□□□ -1.59
FOXA1P55317 GLRA2-202ENST00000355020 1730 ntAPPRIS ALT1 TSL 1 (best) BASIC5.12□□□□□ -1.59
FOXA1P55317 MTX3-204ENST00000617335 6155 ntTSL 2 BASIC5.12□□□□□ -1.59
FOXA1P55317 LINC01378-201ENST00000422145 2516 ntTSL 3 BASIC5.12□□□□□ -1.59
FOXA1P55317 OR1L4-201ENST00000259466 936 ntAPPRIS P1 BASIC5.12□□□□□ -1.59
FOXA1P55317 AC023490.2-201ENST00000359859 470 ntBASIC5.12□□□□□ -1.59
FOXA1P55317 RCAN3-201ENST00000374393 382 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
FOXA1P55317 MYO3A-202ENST00000376301 727 ntTSL 5 BASIC5.12□□□□□ -1.59
FOXA1P55317 SYCE3-202ENST00000406915 448 ntAPPRIS P1 TSL 2 BASIC5.12□□□□□ -1.59
FOXA1P55317 Z93019.1-201ENST00000416450 973 ntBASIC5.12□□□□□ -1.59
FOXA1P55317 AC064862.4-201ENST00000442180 334 ntBASIC5.12□□□□□ -1.59
FOXA1P55317 RPL36AP39-201ENST00000445859 318 ntBASIC5.12□□□□□ -1.59
FOXA1P55317 AC013733.1-201ENST00000449835 985 ntTSL 4 BASIC5.12□□□□□ -1.59
FOXA1P55317 BBIP1-208ENST00000454061 812 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
FOXA1P55317 AC034195.1-203ENST00000455703 728 ntTSL 2 BASIC5.12□□□□□ -1.59
FOXA1P55317 ENPP7P11-201ENST00000505915 627 ntBASIC5.12□□□□□ -1.59
FOXA1P55317 AC098859.2-201ENST00000506232 563 ntTSL 4 BASIC5.12□□□□□ -1.59
FOXA1P55317 AC097110.1-201ENST00000507344 768 ntTSL 2 BASIC5.12□□□□□ -1.59
FOXA1P55317 MYLK-AS2-201ENST00000510827 500 ntTSL 3 BASIC5.12□□□□□ -1.59
FOXA1P55317 AC074087.1-201ENST00000512059 724 ntBASIC5.12□□□□□ -1.59
FOXA1P55317 AC124854.1-201ENST00000512210 511 ntTSL 3 BASIC5.12□□□□□ -1.59
FOXA1P55317 AC140125.1-201ENST00000515739 684 ntTSL 5 BASIC5.12□□□□□ -1.59
FOXA1P55317 RN7SKP70-201ENST00000516655 271 ntBASIC5.12□□□□□ -1.59
FOXA1P55317 AP003696.1-201ENST00000519337 770 ntTSL 3 BASIC5.12□□□□□ -1.59
FOXA1P55317 AC022826.1-201ENST00000519383 805 ntBASIC5.12□□□□□ -1.59
FOXA1P55317 YWHAZ-220ENST00000522819 875 ntTSL 3 BASIC5.12□□□□□ -1.59
FOXA1P55317 YWHABP2-201ENST00000540201 713 ntBASIC5.12□□□□□ -1.59
FOXA1P55317 AC012555.2-201ENST00000549448 413 ntTSL 3 BASIC5.12□□□□□ -1.59
FOXA1P55317 BLZF2P-201ENST00000553776 1130 ntBASIC5.12□□□□□ -1.59
FOXA1P55317 AC135626.1-201ENST00000556983 435 ntBASIC5.12□□□□□ -1.59
FOXA1P55317 AC005341.1-201ENST00000571086 708 ntBASIC5.12□□□□□ -1.59
FOXA1P55317 MIR1273E-201ENST00000581165 102 ntBASIC5.12□□□□□ -1.59
FOXA1P55317 MIR4505-201ENST00000582238 73 ntBASIC5.12□□□□□ -1.59
FOXA1P55317 UBL5-207ENST00000590068 390 ntAPPRIS P1 TSL 5 BASIC5.12□□□□□ -1.59
FOXA1P55317 AC002069.2-201ENST00000603580 883 ntBASIC5.12□□□□□ -1.59
FOXA1P55317 AL356580.1-201ENST00000604129 159 ntTSL 5 BASIC5.12□□□□□ -1.59
FOXA1P55317 LINC01320-210ENST00000626008 929 ntTSL 5 BASIC5.12□□□□□ -1.59
FOXA1P55317 AJ009632.2-203ENST00000634708 1205 ntTSL 5 BASIC5.12□□□□□ -1.59
FOXA1P55317 AL355860.1-201ENST00000636087 1229 ntAPPRIS P1 TSL 2 BASIC5.12□□□□□ -1.59
FOXA1P55317 LINC01837-206ENST00000636649 1056 ntTSL 5 BASIC5.12□□□□□ -1.59
FOXA1P55317 SLC1A3-201ENST00000265113 4170 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
FOXA1P55317 CDC42BPA-201ENST00000334218 10134 ntTSL 5 BASIC5.12□□□□□ -1.59
FOXA1P55317 CEP120-203ENST00000328236 4710 ntAPPRIS P1 TSL 5 BASIC5.12□□□□□ -1.59
FOXA1P55317 RNF19BPY-201ENST00000458209 1550 ntBASIC5.12□□□□□ -1.59
FOXA1P55317 NDUFA5-207ENST00000471770 5608 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
FOXA1P55317 FGG-201ENST00000336098 1659 ntTSL 2 BASIC5.12□□□□□ -1.59
FOXA1P55317 MS4A1-207ENST00000532073 2560 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
FOXA1P55317 AC023421.1-201ENST00000590535 1785 ntBASIC5.11□□□□□ -1.59
FOXA1P55317 RXFP1-206ENST00000460056 2735 ntTSL 2 BASIC5.11□□□□□ -1.59
FOXA1P55317 PROM1-220ENST00000540805 3908 ntAPPRIS ALT2 TSL 5 BASIC5.11□□□□□ -1.59
FOXA1P55317 WDPCP-202ENST00000398544 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC5.11□□□□□ -1.59
FOXA1P55317 VPS13C-204ENST00000395898 11012 ntAPPRIS ALT2 TSL 1 (best) BASIC5.11□□□□□ -1.59
FOXA1P55317 VWC2L-202ENST00000427124 4480 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
FOXA1P55317 MID2-202ENST00000443968 2251 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
FOXA1P55317 AP005432.1-201ENST00000580891 3485 ntBASIC5.11□□□□□ -1.59
FOXA1P55317 FAM162A-201ENST00000232125 801 ntTSL 2 BASIC5.11□□□□□ -1.59
FOXA1P55317 MRPS36-201ENST00000256441 1286 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
FOXA1P55317 DYDC1-202ENST00000372204 750 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
FOXA1P55317 AC005529.1-201ENST00000411969 289 ntTSL 5 BASIC5.11□□□□□ -1.59
FOXA1P55317 PPP2R2DP1-201ENST00000420526 637 ntBASIC5.11□□□□□ -1.59
FOXA1P55317 AL606970.4-201ENST00000424343 455 ntTSL 2 BASIC5.11□□□□□ -1.59
FOXA1P55317 AL049749.1-201ENST00000430281 632 ntTSL 2 BASIC5.11□□□□□ -1.59
FOXA1P55317 AC046176.1-201ENST00000435260 1170 ntBASIC5.11□□□□□ -1.59
FOXA1P55317 AL606534.1-201ENST00000439562 694 ntTSL 3 BASIC5.11□□□□□ -1.59
FOXA1P55317 AC073109.1-201ENST00000445066 978 ntBASIC5.11□□□□□ -1.59
FOXA1P55317 GAPDHP25-201ENST00000447061 1001 ntBASIC5.11□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 73.2 ms