Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 MYPN-202ENST00000358913 6013 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
COL5A3P25940 TAF1-203ENST00000373790 7629 ntAPPRIS ALT2 TSL 1 (best) BASIC6.56□□□□□ -1.36
COL5A3P25940 MAP4K4-219ENST00000625522 7458 ntAPPRIS P5 TSL 5 BASIC6.56□□□□□ -1.36
COL5A3P25940 NOSTRIN-202ENST00000397206 1446 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
COL5A3P25940 EMSY-206ENST00000525038 4376 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
COL5A3P25940 LINC01450-201ENST00000443406 3263 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
COL5A3P25940 TEX14-203ENST00000389934 4927 ntAPPRIS P4 TSL 1 (best) BASIC6.56□□□□□ -1.36
COL5A3P25940 TERB1-203ENST00000558713 2257 ntAPPRIS P1 TSL 5 BASIC6.56□□□□□ -1.36
COL5A3P25940 SNX10-202ENST00000396376 2491 ntAPPRIS P2 TSL 1 (best) BASIC6.56□□□□□ -1.36
COL5A3P25940 OR4N5-201ENST00000333629 927 ntAPPRIS P1 BASIC6.56□□□□□ -1.36
COL5A3P25940 SNORA66-201ENST00000384792 133 ntBASIC6.56□□□□□ -1.36
COL5A3P25940 RNA5SP332-201ENST00000391063 115 ntBASIC6.56□□□□□ -1.36
COL5A3P25940 SNORA77-201ENST00000408716 125 ntBASIC6.56□□□□□ -1.36
COL5A3P25940 CYCSP42-201ENST00000450823 238 ntBASIC6.56□□□□□ -1.36
COL5A3P25940 AC104002.2-201ENST00000553919 318 ntTSL 5 BASIC6.56□□□□□ -1.36
COL5A3P25940 ATP5J2P6-201ENST00000565203 266 ntBASIC6.56□□□□□ -1.36
COL5A3P25940 LINC00511-212ENST00000581183 657 ntTSL 3 BASIC6.56□□□□□ -1.36
COL5A3P25940 AL512782.1-201ENST00000603093 364 ntBASIC6.56□□□□□ -1.36
COL5A3P25940 AC020910.2-201ENST00000603635 610 ntBASIC6.56□□□□□ -1.36
COL5A3P25940 AC104687.2-201ENST00000604442 342 ntBASIC6.56□□□□□ -1.36
COL5A3P25940 AL023583.1-201ENST00000607518 1143 ntBASIC6.56□□□□□ -1.36
COL5A3P25940 AC068831.8-201ENST00000620171 435 ntBASIC6.56□□□□□ -1.36
COL5A3P25940 RIF1-206ENST00000453091 8053 ntAPPRIS ALT2 TSL 1 (best) BASIC6.56□□□□□ -1.36
COL5A3P25940 TOR1AIP2-203ENST00000482587 7067 ntTSL 2 BASIC6.55□□□□□ -1.36
COL5A3P25940 AC092958.1-201ENST00000467198 2569 ntTSL 2 BASIC6.55□□□□□ -1.36
COL5A3P25940 CTSS-201ENST00000368985 4107 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
COL5A3P25940 TRIP12-201ENST00000283943 9874 ntAPPRIS P3 TSL 1 (best) BASIC6.55□□□□□ -1.36
COL5A3P25940 AKAP5-202ENST00000394718 6487 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
COL5A3P25940 DNAH7-202ENST00000409063 1845 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
COL5A3P25940 GOLGA6L22-204ENST00000622895 4178 ntAPPRIS P5 TSL 5 BASIC6.55□□□□□ -1.36
COL5A3P25940 IGF2BP2-AS1-202ENST00000456447 1531 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
COL5A3P25940 TRAM2-201ENST00000182527 6908 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
COL5A3P25940 SETX-201ENST00000224140 11100 ntAPPRIS P2 TSL 1 (best) BASIC6.55□□□□□ -1.36
COL5A3P25940 RUFY3-202ENST00000381006 3098 ntAPPRIS P1 TSL 5 BASIC6.55□□□□□ -1.36
COL5A3P25940 DEFB119-203ENST00000376321 457 ntAPPRIS P3 TSL 1 (best) BASIC6.55□□□□□ -1.36
COL5A3P25940 PLIN2-202ENST00000380464 655 ntTSL 2 BASIC6.55□□□□□ -1.36
COL5A3P25940 TXNDC12-AS1-201ENST00000428794 391 ntTSL 3 BASIC6.55□□□□□ -1.36
COL5A3P25940 AC073072.2-201ENST00000447425 348 ntBASIC6.55□□□□□ -1.36
COL5A3P25940 NUTF2P7-201ENST00000453086 375 ntBASIC6.55□□□□□ -1.36
COL5A3P25940 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC6.55□□□□□ -1.36
COL5A3P25940 MRPS33P2-201ENST00000507850 322 ntBASIC6.55□□□□□ -1.36
COL5A3P25940 ASPH-226ENST00000522919 1277 ntTSL 3 BASIC6.55□□□□□ -1.36
COL5A3P25940 OR4A17P-201ENST00000526032 904 ntBASIC6.55□□□□□ -1.36
COL5A3P25940 AC130364.2-201ENST00000528639 604 ntBASIC6.55□□□□□ -1.36
COL5A3P25940 AC007406.1-201ENST00000544067 315 ntTSL 3 BASIC6.55□□□□□ -1.36
COL5A3P25940 OR11H7-201ENST00000553765 945 ntAPPRIS P1 BASIC6.55□□□□□ -1.36
COL5A3P25940 AC105254.2-201ENST00000603636 436 ntBASIC6.55□□□□□ -1.36
COL5A3P25940 Metazoa_SRP.181-201ENST00000616636 288 ntBASIC6.55□□□□□ -1.36
COL5A3P25940 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC6.55□□□□□ -1.36
COL5A3P25940 ASB15-206ENST00000451558 4788 ntAPPRIS P1 TSL 5 BASIC6.55□□□□□ -1.36
COL5A3P25940 PATE4-201ENST00000457514 1983 ntAPPRIS P2 TSL 2 BASIC6.55□□□□□ -1.36
COL5A3P25940 AC087473.1-201ENST00000561320 2471 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
COL5A3P25940 STARD4-201ENST00000296632 4606 ntAPPRIS P1 TSL 2 BASIC6.54□□□□□ -1.36
COL5A3P25940 AL121594.3-201ENST00000557565 3857 ntAPPRIS P1 TSL 2 BASIC6.54□□□□□ -1.36
COL5A3P25940 DAZ4-205ENST00000440066 1891 ntTSL 5 BASIC6.54□□□□□ -1.36
COL5A3P25940 CASC15-206ENST00000606851 1889 ntTSL 2 BASIC6.54□□□□□ -1.36
COL5A3P25940 CFAP57-208ENST00000610710 4162 ntTSL 5 BASIC6.54□□□□□ -1.36
COL5A3P25940 IPCEF1-202ENST00000367220 1658 ntAPPRIS ALT2 TSL 2 BASIC6.54□□□□□ -1.36
COL5A3P25940 AC093155.3-201ENST00000370548 2013 ntAPPRIS P1 TSL 2 BASIC6.54□□□□□ -1.36
COL5A3P25940 AC016251.2-201ENST00000623393 3089 ntBASIC6.54□□□□□ -1.36
COL5A3P25940 AC090673.1-202ENST00000356215 4617 ntTSL 2 BASIC6.54□□□□□ -1.36
COL5A3P25940 PRR4-201ENST00000228811 563 ntAPPRIS P3 TSL 1 (best) BASIC6.54□□□□□ -1.36
COL5A3P25940 MAP3K2-201ENST00000344908 2135 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
COL5A3P25940 AL359633.2-201ENST00000415787 622 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
COL5A3P25940 LINC01133-202ENST00000443364 1266 ntTSL 5 BASIC6.54□□□□□ -1.36
COL5A3P25940 LINC02231-201ENST00000510459 447 ntTSL 3 BASIC6.54□□□□□ -1.36
COL5A3P25940 AC010261.2-201ENST00000515563 588 ntTSL 2 BASIC6.54□□□□□ -1.36
COL5A3P25940 RNA5SP392-201ENST00000516905 112 ntBASIC6.54□□□□□ -1.36
COL5A3P25940 AC012400.1-201ENST00000518452 381 ntBASIC6.54□□□□□ -1.36
COL5A3P25940 PRR4-206ENST00000540107 388 ntAPPRIS ALT2 TSL 3 BASIC6.54□□□□□ -1.36
COL5A3P25940 AL162431.4-201ENST00000604674 411 ntBASIC6.54□□□□□ -1.36
COL5A3P25940 SNHG5-214ENST00000623001 598 ntTSL 2 BASIC6.54□□□□□ -1.36
COL5A3P25940 AP2B1-222ENST00000628168 192 ntTSL 5 BASIC6.54□□□□□ -1.36
COL5A3P25940 STK3-216ENST00000523601 3107 ntTSL 2 BASIC6.54□□□□□ -1.36
COL5A3P25940 SOCS5-201ENST00000306503 4771 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
COL5A3P25940 ADAMTS9-201ENST00000295903 7060 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
COL5A3P25940 LMO3-235ENST00000616247 3227 ntTSL 5 BASIC6.54□□□□□ -1.36
COL5A3P25940 OR51G2-202ENST00000641926 3326 ntAPPRIS P1 BASIC6.54□□□□□ -1.36
COL5A3P25940 DOCK9-216ENST00000627024 4096 ntTSL 2 BASIC6.54□□□□□ -1.36
COL5A3P25940 AP000808.1-201ENST00000512200 3252 ntTSL 2 BASIC6.54□□□□□ -1.36
COL5A3P25940 LCOR-201ENST00000286067 4542 ntBASIC6.54□□□□□ -1.36
COL5A3P25940 MRPL35-202ENST00000337109 3727 ntAPPRIS P4 TSL 1 (best) BASIC6.54□□□□□ -1.36
COL5A3P25940 MEPE-202ENST00000395102 2123 ntAPPRIS ALT2 TSL 5 BASIC6.54□□□□□ -1.36
COL5A3P25940 DYNC1I2-201ENST00000340296 2589 ntAPPRIS P4 TSL 1 (best) BASIC6.54□□□□□ -1.36
COL5A3P25940 PDE4DIP-206ENST00000369356 8307 ntAPPRIS P4 TSL 1 (best) BASIC6.54□□□□□ -1.36
COL5A3P25940 PROX1-AS1-202ENST00000433082 5266 ntTSL 5 BASIC6.54□□□□□ -1.36
COL5A3P25940 DCTN5-201ENST00000300087 11011 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
COL5A3P25940 STARD4-AS1-201ENST00000500779 5525 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
COL5A3P25940 DPY19L3-202ENST00000392250 5998 ntAPPRIS P1 TSL 5 BASIC6.53□□□□□ -1.36
COL5A3P25940 MAX-203ENST00000341653 330 ntTSL 2 BASIC6.53□□□□□ -1.36
COL5A3P25940 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
COL5A3P25940 GLULP6-201ENST00000399502 913 ntBASIC6.53□□□□□ -1.36
COL5A3P25940 P2RY10P2-201ENST00000416730 913 ntBASIC6.53□□□□□ -1.36
COL5A3P25940 AC092570.3-201ENST00000420113 693 ntBASIC6.53□□□□□ -1.36
COL5A3P25940 AC004074.1-201ENST00000421810 1063 ntBASIC6.53□□□□□ -1.36
COL5A3P25940 SPATA13-AS1-201ENST00000430733 433 ntTSL 3 BASIC6.53□□□□□ -1.36
COL5A3P25940 AL354771.1-201ENST00000452178 602 ntTSL 5 BASIC6.53□□□□□ -1.36
COL5A3P25940 AF015262.1-201ENST00000455028 698 ntTSL 3 BASIC6.53□□□□□ -1.36
COL5A3P25940 RN7SL385P-201ENST00000468873 276 ntBASIC6.53□□□□□ -1.36
COL5A3P25940 AC005412.2-201ENST00000492004 341 ntBASIC6.53□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 65.4 ms