Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 LINC01133-202ENST00000443364 1266 ntTSL 5 BASIC5.75□□□□□ -1.49
HDDC3Q8N4P3 CYCSP51-201ENST00000443545 318 ntBASIC5.75□□□□□ -1.49
HDDC3Q8N4P3 RBMY2TP-201ENST00000451162 947 ntBASIC5.75□□□□□ -1.49
HDDC3Q8N4P3 LINC01448-201ENST00000455947 1171 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
HDDC3Q8N4P3 AC004129.2-201ENST00000457229 287 ntBASIC5.75□□□□□ -1.49
HDDC3Q8N4P3 RN7SL172P-201ENST00000460535 303 ntBASIC5.75□□□□□ -1.49
HDDC3Q8N4P3 SLC25A51P1-201ENST00000468432 871 ntBASIC5.75□□□□□ -1.49
HDDC3Q8N4P3 AC090142.2-201ENST00000483263 416 ntBASIC5.75□□□□□ -1.49
HDDC3Q8N4P3 GSTM1-206ENST00000483399 512 ntTSL 3 BASIC5.75□□□□□ -1.49
HDDC3Q8N4P3 RPS3AP15-201ENST00000483874 781 ntBASIC5.75□□□□□ -1.49
HDDC3Q8N4P3 GCSAM-204ENST00000484193 1036 ntAPPRIS ALT1 TSL 2 BASIC5.75□□□□□ -1.49
HDDC3Q8N4P3 AC026782.2-201ENST00000510845 636 ntBASIC5.75□□□□□ -1.49
HDDC3Q8N4P3 AC006296.1-201ENST00000514401 591 ntTSL 2 BASIC5.75□□□□□ -1.49
HDDC3Q8N4P3 RPL26L1-203ENST00000519239 679 ntAPPRIS P1 TSL 2 BASIC5.75□□□□□ -1.49
HDDC3Q8N4P3 AC090424.1-201ENST00000535243 736 ntBASIC5.75□□□□□ -1.49
HDDC3Q8N4P3 AC244502.2-201ENST00000543361 851 ntBASIC5.75□□□□□ -1.49
HDDC3Q8N4P3 DUX4L52-201ENST00000549363 777 ntBASIC5.75□□□□□ -1.49
HDDC3Q8N4P3 AL139022.1-201ENST00000556127 486 ntTSL 5 BASIC5.75□□□□□ -1.49
HDDC3Q8N4P3 AC131274.1-201ENST00000582507 254 ntTSL 3 BASIC5.75□□□□□ -1.49
HDDC3Q8N4P3 AC097376.2-202ENST00000608345 433 ntTSL 3 BASIC5.75□□□□□ -1.49
HDDC3Q8N4P3 U1.25-201ENST00000614085 162 ntBASIC5.75□□□□□ -1.49
HDDC3Q8N4P3 AC090607.5-201ENST00000615692 224 ntBASIC5.75□□□□□ -1.49
HDDC3Q8N4P3 U1.31-201ENST00000620022 160 ntBASIC5.75□□□□□ -1.49
HDDC3Q8N4P3 CCL14-204ENST00000622526 472 ntTSL 3 BASIC5.75□□□□□ -1.49
HDDC3Q8N4P3 DARS-AS1-227ENST00000627442 633 ntTSL 5 BASIC5.75□□□□□ -1.49
HDDC3Q8N4P3 AC099654.6-201ENST00000636487 512 ntBASIC5.75□□□□□ -1.49
HDDC3Q8N4P3 AC114876.1-201ENST00000490962 1366 ntBASIC5.75□□□□□ -1.49
HDDC3Q8N4P3 NHSL2-204ENST00000631375 12593 ntTSL 5 BASIC5.75□□□□□ -1.49
HDDC3Q8N4P3 ZNF343-207ENST00000612935 3675 ntAPPRIS ALT2 TSL 5 BASIC5.75□□□□□ -1.49
HDDC3Q8N4P3 ZNF850-202ENST00000591344 7714 ntAPPRIS P3 TSL 1 (best) BASIC5.75□□□□□ -1.49
HDDC3Q8N4P3 AC011503.1-201ENST00000596326 1585 ntTSL 2 BASIC5.75□□□□□ -1.49
HDDC3Q8N4P3 DPP8-203ENST00000341861 8699 ntAPPRIS P4 TSL 2 BASIC5.75□□□□□ -1.49
HDDC3Q8N4P3 ADGRL3-210ENST00000508946 4758 ntAPPRIS ALT2 TSL 5 BASIC5.75□□□□□ -1.49
HDDC3Q8N4P3 PARP8-212ENST00000505697 2747 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
HDDC3Q8N4P3 ZNF345-215ENST00000614069 3103 ntAPPRIS P1 TSL 3 BASIC5.74□□□□□ -1.49
HDDC3Q8N4P3 LINC02227-201ENST00000619068 3748 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
HDDC3Q8N4P3 SEMA3A-201ENST00000265362 8225 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
HDDC3Q8N4P3 AC005725.1-201ENST00000577346 2607 ntBASIC5.74□□□□□ -1.49
HDDC3Q8N4P3 ATXN7-208ENST00000484332 2741 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
HDDC3Q8N4P3 MYBPC1-209ENST00000547509 3749 ntAPPRIS ALT2 TSL 5 BASIC5.74□□□□□ -1.49
HDDC3Q8N4P3 RN7SKP115-201ENST00000363177 317 ntBASIC5.74□□□□□ -1.49
HDDC3Q8N4P3 RNA5SP131-201ENST00000365452 119 ntBASIC5.74□□□□□ -1.49
HDDC3Q8N4P3 PRB3-201ENST00000381842 1091 ntAPPRIS ALT2 TSL 5 BASIC5.74□□□□□ -1.49
HDDC3Q8N4P3 RPL23AP17-201ENST00000401064 499 ntBASIC5.74□□□□□ -1.49
HDDC3Q8N4P3 GNG12-AS1-202ENST00000414904 796 ntTSL 3 BASIC5.74□□□□□ -1.49
HDDC3Q8N4P3 AL139148.1-201ENST00000427122 680 ntBASIC5.74□□□□□ -1.49
HDDC3Q8N4P3 ALG13-AS1-201ENST00000430794 195 ntTSL 5 BASIC5.74□□□□□ -1.49
HDDC3Q8N4P3 AC096775.1-201ENST00000437724 448 ntBASIC5.74□□□□□ -1.49
HDDC3Q8N4P3 AL390119.1-201ENST00000440329 312 ntBASIC5.74□□□□□ -1.49
HDDC3Q8N4P3 OR7E116P-201ENST00000448529 957 ntBASIC5.74□□□□□ -1.49
HDDC3Q8N4P3 OSTCP1-201ENST00000455507 450 ntBASIC5.74□□□□□ -1.49
HDDC3Q8N4P3 LDHBP2-201ENST00000456969 1005 ntBASIC5.74□□□□□ -1.49
HDDC3Q8N4P3 MTND6P32-201ENST00000457611 483 ntBASIC5.74□□□□□ -1.49
HDDC3Q8N4P3 RN7SL583P-201ENST00000475692 287 ntBASIC5.74□□□□□ -1.49
HDDC3Q8N4P3 PLSCR5-203ENST00000492200 1058 ntAPPRIS P1 TSL 5 BASIC5.74□□□□□ -1.49
HDDC3Q8N4P3 AC007370.1-201ENST00000503163 316 ntTSL 2 BASIC5.74□□□□□ -1.49
HDDC3Q8N4P3 SERF1B-203ENST00000503931 569 ntTSL 4 BASIC5.74□□□□□ -1.49
HDDC3Q8N4P3 SERF1A-204ENST00000504458 569 ntTSL 4 BASIC5.74□□□□□ -1.49
HDDC3Q8N4P3 AC084871.1-201ENST00000508020 628 ntTSL 3 BASIC5.74□□□□□ -1.49
HDDC3Q8N4P3 LINC02117-201ENST00000513673 540 ntTSL 4 BASIC5.74□□□□□ -1.49
HDDC3Q8N4P3 SNHG1-211ENST00000539921 1071 ntTSL 2 BASIC5.74□□□□□ -1.49
HDDC3Q8N4P3 AC090109.1-201ENST00000548885 819 ntTSL 3 BASIC5.74□□□□□ -1.49
HDDC3Q8N4P3 HMGN2P6-201ENST00000551091 273 ntBASIC5.74□□□□□ -1.49
HDDC3Q8N4P3 GPATCH2L-203ENST00000553588 776 ntTSL 2 BASIC5.74□□□□□ -1.49
HDDC3Q8N4P3 LINC02563-201ENST00000579474 277 ntTSL 3 BASIC5.74□□□□□ -1.49
HDDC3Q8N4P3 LINC01520-201ENST00000441457 1487 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
HDDC3Q8N4P3 ADAM21-201ENST00000603540 2658 ntAPPRIS P1 TSL 3 BASIC5.74□□□□□ -1.49
HDDC3Q8N4P3 TAX1BP1-203ENST00000409980 2629 ntAPPRIS ALT2 TSL 5 BASIC5.74□□□□□ -1.49
HDDC3Q8N4P3 DLG1-213ENST00000443183 2516 ntTSL 2 BASIC5.74□□□□□ -1.49
HDDC3Q8N4P3 CPS1-IT1-201ENST00000628368 2306 ntBASIC5.74□□□□□ -1.49
HDDC3Q8N4P3 DNTTIP2-202ENST00000436063 5897 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
HDDC3Q8N4P3 SPATA5-201ENST00000274008 8137 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
HDDC3Q8N4P3 TTI1-203ENST00000449821 3791 ntAPPRIS P1 TSL 2 BASIC5.73□□□□□ -1.49
HDDC3Q8N4P3 CAPN6-201ENST00000324068 3568 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
HDDC3Q8N4P3 SMAP1-206ENST00000619054 3150 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
HDDC3Q8N4P3 ITCH-201ENST00000262650 3089 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
HDDC3Q8N4P3 RNMT-202ENST00000383314 6250 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
HDDC3Q8N4P3 AL161912.4-201ENST00000623889 2468 ntBASIC5.73□□□□□ -1.49
HDDC3Q8N4P3 ZFYVE16-206ENST00000510158 6680 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
HDDC3Q8N4P3 CEP290-202ENST00000397838 2421 ntTSL 5 BASIC5.73□□□□□ -1.49
HDDC3Q8N4P3 OR11H1-201ENST00000252835 982 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
HDDC3Q8N4P3 FAS-205ENST00000357339 1044 ntAPPRIS ALT2 TSL 1 (best) BASIC5.73□□□□□ -1.49
HDDC3Q8N4P3 TRAV8-7-201ENST00000390456 341 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
HDDC3Q8N4P3 GAPDHP15-201ENST00000398586 975 ntBASIC5.73□□□□□ -1.49
HDDC3Q8N4P3 SNORA79B-201ENST00000410557 148 ntBASIC5.73□□□□□ -1.49
HDDC3Q8N4P3 RPL23AP27-201ENST00000415161 451 ntBASIC5.73□□□□□ -1.49
HDDC3Q8N4P3 EIF4A1P7-201ENST00000421800 1220 ntBASIC5.73□□□□□ -1.49
HDDC3Q8N4P3 AL133173.1-201ENST00000423458 397 ntBASIC5.73□□□□□ -1.49
HDDC3Q8N4P3 AL021153.1-201ENST00000427360 308 ntTSL 3 BASIC5.73□□□□□ -1.49
HDDC3Q8N4P3 BX119904.3-201ENST00000428194 957 ntBASIC5.73□□□□□ -1.49
HDDC3Q8N4P3 AL021408.1-201ENST00000430428 552 ntTSL 4 BASIC5.73□□□□□ -1.49
HDDC3Q8N4P3 LINC02038-201ENST00000439074 702 ntTSL 4 BASIC5.73□□□□□ -1.49
HDDC3Q8N4P3 LINC01496-201ENST00000448761 460 ntTSL 5 BASIC5.73□□□□□ -1.49
HDDC3Q8N4P3 RN7SL51P-201ENST00000468230 285 ntBASIC5.73□□□□□ -1.49
HDDC3Q8N4P3 RPL35AP19-201ENST00000469425 329 ntBASIC5.73□□□□□ -1.49
HDDC3Q8N4P3 AC079080.1-201ENST00000479841 822 ntBASIC5.73□□□□□ -1.49
HDDC3Q8N4P3 RN7SL727P-201ENST00000482164 296 ntBASIC5.73□□□□□ -1.49
HDDC3Q8N4P3 AC073610.1-201ENST00000489971 396 ntBASIC5.73□□□□□ -1.49
HDDC3Q8N4P3 RPL15P21-201ENST00000495592 567 ntBASIC5.73□□□□□ -1.49
HDDC3Q8N4P3 LINC00632-202ENST00000498732 746 ntTSL 3 BASIC5.73□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 95.5 ms