Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 MEF2A-201ENST00000338042 5464 ntAPPRIS ALT1 TSL 2 BASIC3.69□□□□□ -1.82
PRKDCP78527 ZBTB40-202ENST00000375647 8685 ntAPPRIS P3 TSL 1 (best) BASIC3.69□□□□□ -1.82
PRKDCP78527 AC107068.1-201ENST00000563286 4218 ntBASIC3.69□□□□□ -1.82
PRKDCP78527 MIR298-201ENST00000401212 88 ntBASIC3.69□□□□□ -1.82
PRKDCP78527 OR10T1P-201ENST00000424327 947 ntBASIC3.69□□□□□ -1.82
PRKDCP78527 AC245028.2-201ENST00000458673 253 ntBASIC3.69□□□□□ -1.82
PRKDCP78527 AC093840.1-201ENST00000511599 336 ntBASIC3.69□□□□□ -1.82
PRKDCP78527 AL049779.1-201ENST00000553306 670 ntTSL 2 BASIC3.69□□□□□ -1.82
PRKDCP78527 AP005901.4-201ENST00000577336 569 ntBASIC3.69□□□□□ -1.82
PRKDCP78527 AC008782.1-201ENST00000603386 430 ntBASIC3.69□□□□□ -1.82
PRKDCP78527 TTI1-203ENST00000449821 3791 ntAPPRIS P1 TSL 2 BASIC3.69□□□□□ -1.82
PRKDCP78527 PAN2-221ENST00000610546 5301 ntAPPRIS ALT1 TSL 5 BASIC3.69□□□□□ -1.82
PRKDCP78527 WDFY4-201ENST00000325239 10079 ntAPPRIS P1 TSL 5 BASIC3.69□□□□□ -1.82
PRKDCP78527 ESRRG-219ENST00000487276 3015 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
PRKDCP78527 CD200R1-201ENST00000295863 1692 ntTSL 2 BASIC3.69□□□□□ -1.82
PRKDCP78527 CSMD2-210ENST00000619121 13430 ntAPPRIS ALT2 TSL 5 BASIC3.69□□□□□ -1.82
PRKDCP78527 PTK2-213ENST00000519465 3279 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
PRKDCP78527 NBPF11-204ENST00000614785 4343 ntAPPRIS ALT2 TSL 5 BASIC3.69□□□□□ -1.82
PRKDCP78527 AL136979.1-201ENST00000421645 1120 ntTSL 3 BASIC3.69□□□□□ -1.82
PRKDCP78527 AL354766.1-201ENST00000423396 542 ntBASIC3.69□□□□□ -1.82
PRKDCP78527 CYCSP11-201ENST00000436426 315 ntBASIC3.69□□□□□ -1.82
PRKDCP78527 CT45A11P-201ENST00000448043 1134 ntBASIC3.69□□□□□ -1.82
PRKDCP78527 PRPF38AP1-201ENST00000451976 933 ntBASIC3.69□□□□□ -1.82
PRKDCP78527 AK3P4-201ENST00000504283 583 ntBASIC3.69□□□□□ -1.82
PRKDCP78527 AC109464.1-201ENST00000511091 819 ntBASIC3.69□□□□□ -1.82
PRKDCP78527 OR11H3P-201ENST00000554547 982 ntBASIC3.69□□□□□ -1.82
PRKDCP78527 AC090948.2-201ENST00000607363 564 ntBASIC3.69□□□□□ -1.82
PRKDCP78527 AC135068.5-201ENST00000624197 983 ntBASIC3.69□□□□□ -1.82
PRKDCP78527 LINC00254-202ENST00000633813 439 ntTSL 3 BASIC3.69□□□□□ -1.82
PRKDCP78527 LINC01541-202ENST00000568095 3105 ntTSL 1 (best) BASIC3.69□□□□□ -1.82
PRKDCP78527 SH3YL1-203ENST00000403657 3540 ntTSL 2 BASIC3.69□□□□□ -1.82
PRKDCP78527 PTPN14-201ENST00000366956 12985 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
PRKDCP78527 MAK-202ENST00000354489 3941 ntTSL 5 BASIC3.69□□□□□ -1.82
PRKDCP78527 SYT4-201ENST00000255224 4110 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
PRKDCP78527 NRDC-213ENST00000539524 3417 ntAPPRIS ALT2 TSL 1 (best) BASIC3.69□□□□□ -1.82
PRKDCP78527 ARMCX5-202ENST00000372742 2647 ntAPPRIS P1 TSL 2 BASIC3.69□□□□□ -1.82
PRKDCP78527 LINC00630-205ENST00000440496 2101 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
PRKDCP78527 PRDM15-203ENST00000422911 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC3.68□□□□□ -1.82
PRKDCP78527 AL451107.1-201ENST00000416310 408 ntTSL 2 BASIC3.68□□□□□ -1.82
PRKDCP78527 CEACAMP6-201ENST00000452007 574 ntBASIC3.68□□□□□ -1.82
PRKDCP78527 FPGT-203ENST00000467578 601 ntTSL 2 BASIC3.68□□□□□ -1.82
PRKDCP78527 RPL23AP2-201ENST00000471227 466 ntBASIC3.68□□□□□ -1.82
PRKDCP78527 AL049779.3-201ENST00000557141 606 ntBASIC3.68□□□□□ -1.82
PRKDCP78527 NEDD4L-209ENST00000456986 8436 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
PRKDCP78527 GABRA1-218ENST00000637827 1838 ntAPPRIS P1 TSL 5 BASIC3.68□□□□□ -1.82
PRKDCP78527 ARL17A-202ENST00000336125 3945 ntAPPRIS P4 TSL 1 (best) BASIC3.68□□□□□ -1.82
PRKDCP78527 MAP3K20-202ENST00000375213 3741 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
PRKDCP78527 ZNF234-201ENST00000426739 4551 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
PRKDCP78527 CPNE4-214ENST00000617767 3556 ntTSL 2 BASIC3.68□□□□□ -1.82
PRKDCP78527 DYRK1A-201ENST00000338785 5498 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
PRKDCP78527 RGS6-204ENST00000404301 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC3.68□□□□□ -1.82
PRKDCP78527 RGS6-206ENST00000407322 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC3.68□□□□□ -1.82
PRKDCP78527 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
PRKDCP78527 KIF27-201ENST00000297814 4653 ntAPPRIS P3 TSL 1 (best) BASIC3.68□□□□□ -1.82
PRKDCP78527 RNU1-24P-201ENST00000364285 165 ntBASIC3.68□□□□□ -1.82
PRKDCP78527 MIR600-201ENST00000385007 98 ntBASIC3.68□□□□□ -1.82
PRKDCP78527 RPL23AP59-201ENST00000399415 461 ntBASIC3.68□□□□□ -1.82
PRKDCP78527 TMBIM7P-201ENST00000418074 855 ntBASIC3.68□□□□□ -1.82
PRKDCP78527 STXBP5-AS1-204ENST00000431143 644 ntTSL 3 BASIC3.68□□□□□ -1.82
PRKDCP78527 OSTCP1-201ENST00000455507 450 ntBASIC3.68□□□□□ -1.82
PRKDCP78527 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC3.68□□□□□ -1.82
PRKDCP78527 IGHVIII-13-1-201ENST00000517613 291 ntBASIC3.68□□□□□ -1.82
PRKDCP78527 AC091073.1-201ENST00000559620 666 ntTSL 3 BASIC3.68□□□□□ -1.82
PRKDCP78527 AGGF1P7-201ENST00000562369 913 ntBASIC3.68□□□□□ -1.82
PRKDCP78527 AL163952.1-202ENST00000569625 600 ntBASIC3.68□□□□□ -1.82
PRKDCP78527 DMXL2-201ENST00000251076 10672 ntAPPRIS P3 TSL 1 (best) BASIC3.68□□□□□ -1.82
PRKDCP78527 MTAP-201ENST00000380172 6122 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
PRKDCP78527 CLEC7A-205ENST00000353231 2446 ntAPPRIS P3 TSL 1 (best) BASIC3.68□□□□□ -1.82
PRKDCP78527 PLD5-208ENST00000536534 8721 ntAPPRIS P3 TSL 1 (best) BASIC3.68□□□□□ -1.82
PRKDCP78527 AC120338.1-201ENST00000625074 1541 ntBASIC3.68□□□□□ -1.82
PRKDCP78527 MARF1-202ENST00000540441 7105 ntTSL 5 BASIC3.68□□□□□ -1.82
PRKDCP78527 NRK-204ENST00000540278 1687 ntTSL 2 BASIC3.68□□□□□ -1.82
PRKDCP78527 TLN2-209ENST00000561311 11880 ntAPPRIS P1 TSL 5 BASIC3.68□□□□□ -1.82
PRKDCP78527 AC093277.1-201ENST00000637776 1622 ntTSL 5 BASIC3.68□□□□□ -1.82
PRKDCP78527 DCDC1-207ENST00000452803 1706 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
PRKDCP78527 RNU1-103P-201ENST00000516502 125 ntBASIC3.68□□□□□ -1.82
PRKDCP78527 AC084838.1-201ENST00000532973 312 ntTSL 3 BASIC3.68□□□□□ -1.82
PRKDCP78527 AC092078.1-201ENST00000558370 325 ntTSL 3 BASIC3.68□□□□□ -1.82
PRKDCP78527 AC005191.1-201ENST00000603950 358 ntBASIC3.68□□□□□ -1.82
PRKDCP78527 AC114781.5-201ENST00000615297 108 ntBASIC3.68□□□□□ -1.82
PRKDCP78527 AL035461.2-201ENST00000619201 524 ntBASIC3.68□□□□□ -1.82
PRKDCP78527 SPATS2L-201ENST00000358677 6156 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
PRKDCP78527 NAIP-208ENST00000517649 6124 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.82
PRKDCP78527 PPARA-201ENST00000262735 9965 ntAPPRIS P1 TSL 5 BASIC3.68□□□□□ -1.82
PRKDCP78527 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
PRKDCP78527 PCM1-212ENST00000519253 6443 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
PRKDCP78527 RAD17P1-201ENST00000418130 2042 ntBASIC3.68□□□□□ -1.82
PRKDCP78527 CECR2-206ENST00000612582 9645 ntAPPRIS ALT2 TSL 5 BASIC3.68□□□□□ -1.82
PRKDCP78527 OR7G2-201ENST00000305456 1038 ntAPPRIS P2 BASIC3.68□□□□□ -1.82
PRKDCP78527 OXSM-202ENST00000420173 1256 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
PRKDCP78527 RN7SL319P-201ENST00000480656 221 ntBASIC3.68□□□□□ -1.82
PRKDCP78527 TRBV5-2-201ENST00000489095 273 ntBASIC3.68□□□□□ -1.82
PRKDCP78527 AGK-205ENST00000492693 1046 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
PRKDCP78527 LONRF1-203ENST00000525024 841 ntTSL 1 (best) BASIC3.68□□□□□ -1.82
PRKDCP78527 AC015845.1-202ENST00000580184 242 ntTSL 3 BASIC3.68□□□□□ -1.82
PRKDCP78527 AC005858.4-201ENST00000623191 700 ntBASIC3.68□□□□□ -1.82
PRKDCP78527 FP236315.3-201ENST00000623587 307 ntTSL 2 BASIC3.68□□□□□ -1.82
PRKDCP78527 CARF-203ENST00000414439 2099 ntTSL 2 BASIC3.68□□□□□ -1.82
PRKDCP78527 GAN-202ENST00000568107 15244 ntAPPRIS P1 TSL 1 (best) BASIC3.67□□□□□ -1.82
PRKDCP78527 FOXJ3-203ENST00000372571 4468 ntTSL 2 BASIC3.67□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 111.8 ms