Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 FDFT1-208ENST00000525777 1472 ntTSL 2 BASIC7.07□□□□□ -1.28
LIG3P49916 SPP2-201ENST00000168148 1024 ntAPPRIS P2 TSL 1 (best) BASIC7.07□□□□□ -1.28
LIG3P49916 TMBIM4-201ENST00000286424 989 ntTSL 5 BASIC7.07□□□□□ -1.28
LIG3P49916 OR10R2-201ENST00000368152 1008 ntAPPRIS P2 BASIC7.07□□□□□ -1.28
LIG3P49916 TAF9BP1-201ENST00000396646 746 ntBASIC7.07□□□□□ -1.28
LIG3P49916 EEF1GP6-201ENST00000402309 905 ntBASIC7.07□□□□□ -1.28
LIG3P49916 RPL7P58-201ENST00000402913 758 ntBASIC7.07□□□□□ -1.28
LIG3P49916 AL645465.1-201ENST00000417765 642 ntTSL 3 BASIC7.07□□□□□ -1.28
LIG3P49916 AL020993.1-201ENST00000420172 297 ntTSL 3 BASIC7.07□□□□□ -1.28
LIG3P49916 LINC01031-201ENST00000420807 779 ntTSL 3 BASIC7.07□□□□□ -1.28
LIG3P49916 RPS7P12-201ENST00000422385 582 ntBASIC7.07□□□□□ -1.28
LIG3P49916 MED4-AS1-201ENST00000422483 542 ntTSL 2 BASIC7.07□□□□□ -1.28
LIG3P49916 CHCHD3P1-201ENST00000425516 676 ntBASIC7.07□□□□□ -1.28
LIG3P49916 TAF1A-AS1-202ENST00000427540 750 ntTSL 2 BASIC7.07□□□□□ -1.28
LIG3P49916 EIF4A1P5-201ENST00000428062 1095 ntBASIC7.07□□□□□ -1.28
LIG3P49916 AL139042.1-201ENST00000429137 305 ntTSL 3 BASIC7.07□□□□□ -1.28
LIG3P49916 AL139327.2-202ENST00000437057 400 ntTSL 3 BASIC7.07□□□□□ -1.28
LIG3P49916 TVP23CP1-201ENST00000450317 639 ntBASIC7.07□□□□□ -1.28
LIG3P49916 AC026391.1-201ENST00000450677 537 ntTSL 3 BASIC7.07□□□□□ -1.28
LIG3P49916 RPL21P134-201ENST00000453468 483 ntBASIC7.07□□□□□ -1.28
LIG3P49916 AL021393.1-201ENST00000456740 539 ntTSL 5 BASIC7.07□□□□□ -1.28
LIG3P49916 RN7SL160P-201ENST00000468558 284 ntBASIC7.07□□□□□ -1.28
LIG3P49916 XACT-201ENST00000468762 497 ntTSL 5 BASIC7.07□□□□□ -1.28
LIG3P49916 AC091959.2-201ENST00000477363 321 ntBASIC7.07□□□□□ -1.28
LIG3P49916 AC079080.1-201ENST00000479841 822 ntBASIC7.07□□□□□ -1.28
LIG3P49916 LINC02027-201ENST00000482617 596 ntTSL 5 BASIC7.07□□□□□ -1.28
LIG3P49916 RN7SL849P-201ENST00000485236 295 ntBASIC7.07□□□□□ -1.28
LIG3P49916 AL079303.1-201ENST00000486611 463 ntBASIC7.07□□□□□ -1.28
LIG3P49916 AC122714.1-201ENST00000502510 459 ntBASIC7.07□□□□□ -1.28
LIG3P49916 AC109927.2-201ENST00000506416 303 ntBASIC7.07□□□□□ -1.28
LIG3P49916 AC005178.1-201ENST00000508392 440 ntBASIC7.07□□□□□ -1.28
LIG3P49916 AC026782.2-201ENST00000510845 636 ntBASIC7.07□□□□□ -1.28
LIG3P49916 DCAF13P2-201ENST00000514188 555 ntBASIC7.07□□□□□ -1.28
LIG3P49916 SCARNA6-201ENST00000515982 265 ntBASIC7.07□□□□□ -1.28
LIG3P49916 Y_RNA.695-201ENST00000516715 107 ntBASIC7.07□□□□□ -1.28
LIG3P49916 AC114550.3-201ENST00000524073 579 ntTSL 4 BASIC7.07□□□□□ -1.28
LIG3P49916 NAP1L1P1-201ENST00000524793 1063 ntBASIC7.07□□□□□ -1.28
LIG3P49916 C14orf105-204ENST00000526336 598 ntTSL 4 BASIC7.07□□□□□ -1.28
LIG3P49916 KCTD9P4-201ENST00000526766 1166 ntBASIC7.07□□□□□ -1.28
LIG3P49916 AP000619.2-201ENST00000546014 969 ntBASIC7.07□□□□□ -1.28
LIG3P49916 HNRNPCP1-201ENST00000556181 766 ntBASIC7.07□□□□□ -1.28
LIG3P49916 BLOC1S6-209ENST00000565409 616 ntTSL 4 BASIC7.07□□□□□ -1.28
LIG3P49916 MIR3912-201ENST00000577566 105 ntBASIC7.07□□□□□ -1.28
LIG3P49916 AC090283.1-201ENST00000582101 265 ntTSL 3 BASIC7.07□□□□□ -1.28
LIG3P49916 FAM106CP-201ENST00000582212 507 ntBASIC7.07□□□□□ -1.28
LIG3P49916 LINC01899-203ENST00000584810 337 ntTSL 2 BASIC7.07□□□□□ -1.28
LIG3P49916 SIGLEC31P-201ENST00000594237 551 ntBASIC7.07□□□□□ -1.28
LIG3P49916 AC092354.2-201ENST00000607786 514 ntBASIC7.07□□□□□ -1.28
LIG3P49916 AL139418.1-201ENST00000613613 177 ntBASIC7.07□□□□□ -1.28
LIG3P49916 AL138960.1-201ENST00000613838 513 ntBASIC7.07□□□□□ -1.28
LIG3P49916 RN7SL126P-201ENST00000616400 299 ntBASIC7.07□□□□□ -1.28
LIG3P49916 AC018755.4-201ENST00000619715 454 ntBASIC7.07□□□□□ -1.28
LIG3P49916 AC005753.1-201ENST00000623837 618 ntBASIC7.07□□□□□ -1.28
LIG3P49916 AC008626.2-201ENST00000624425 248 ntBASIC7.07□□□□□ -1.28
LIG3P49916 GOLT1B-201ENST00000229314 3227 ntAPPRIS P2 TSL 1 (best) BASIC7.07□□□□□ -1.28
LIG3P49916 SLMAP-202ENST00000295952 4420 ntAPPRIS P1 TSL 2 BASIC7.07□□□□□ -1.28
LIG3P49916 SLC16A4-201ENST00000369779 2632 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
LIG3P49916 PPIL1-201ENST00000373699 1739 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
LIG3P49916 ECT2-201ENST00000232458 4087 ntAPPRIS P2 TSL 1 (best) BASIC7.06□□□□□ -1.28
LIG3P49916 AL121949.2-201ENST00000403446 1548 ntBASIC7.06□□□□□ -1.28
LIG3P49916 FRMD7-202ENST00000370879 2864 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
LIG3P49916 FRMD6-205ENST00000554167 4176 ntTSL 2 BASIC7.06□□□□□ -1.28
LIG3P49916 SCGB2A2-202ENST00000525380 1305 ntTSL 2 BASIC7.06□□□□□ -1.28
LIG3P49916 PHF7-211ENST00000615126 1328 ntTSL 5 BASIC7.06□□□□□ -1.28
LIG3P49916 KCNA2-209ENST00000639048 10836 ntTSL 5 BASIC7.06□□□□□ -1.28
LIG3P49916 ARF4-209ENST00000496292 1467 ntTSL 5 BASIC7.06□□□□□ -1.28
LIG3P49916 NR5A2-203ENST00000367362 5086 ntAPPRIS P3 TSL 1 (best) BASIC7.06□□□□□ -1.28
LIG3P49916 PHYHIPL-201ENST00000373878 3569 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
LIG3P49916 AP005139.1-201ENST00000580702 1647 ntBASIC7.06□□□□□ -1.28
LIG3P49916 AC068769.1-201ENST00000474767 2426 ntBASIC7.06□□□□□ -1.28
LIG3P49916 ASTN2-AS1-201ENST00000418250 1756 ntTSL 2 BASIC7.06□□□□□ -1.28
LIG3P49916 OR2A3P-202ENST00000641249 1776 ntBASIC7.06□□□□□ -1.28
LIG3P49916 DNHD1-201ENST00000254579 14862 ntAPPRIS P1 TSL 5 BASIC7.06□□□□□ -1.28
LIG3P49916 KIAA0232-201ENST00000307659 7841 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
LIG3P49916 OR56B2P-201ENST00000317102 954 ntBASIC7.06□□□□□ -1.28
LIG3P49916 RPL7-201ENST00000352983 1101 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
LIG3P49916 RNU6-1017P-201ENST00000363613 106 ntBASIC7.06□□□□□ -1.28
LIG3P49916 EQTN-202ENST00000380032 1033 ntAPPRIS P3 TSL 1 (best) BASIC7.06□□□□□ -1.28
LIG3P49916 AC006511.2-201ENST00000388966 660 ntBASIC7.06□□□□□ -1.28
LIG3P49916 TRAV27-201ENST00000390457 425 ntAPPRIS P1 BASIC7.06□□□□□ -1.28
LIG3P49916 ATP5E-203ENST00000395663 697 ntAPPRIS P1 TSL 2 BASIC7.06□□□□□ -1.28
LIG3P49916 UBE2V1P10-201ENST00000414685 269 ntBASIC7.06□□□□□ -1.28
LIG3P49916 AL359633.2-201ENST00000415787 622 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
LIG3P49916 EIF4A1P2-201ENST00000422633 1220 ntBASIC7.06□□□□□ -1.28
LIG3P49916 GAPDHP34-201ENST00000432112 823 ntBASIC7.06□□□□□ -1.28
LIG3P49916 DEFA9P-201ENST00000433042 285 ntBASIC7.06□□□□□ -1.28
LIG3P49916 LINC02013-201ENST00000438156 526 ntTSL 2 BASIC7.06□□□□□ -1.28
LIG3P49916 AL451164.3-201ENST00000441377 447 ntTSL 5 BASIC7.06□□□□□ -1.28
LIG3P49916 GTF3AP5-201ENST00000442645 697 ntBASIC7.06□□□□□ -1.28
LIG3P49916 WDR82P2-201ENST00000444540 928 ntBASIC7.06□□□□□ -1.28
LIG3P49916 BMI1P1-201ENST00000445879 941 ntBASIC7.06□□□□□ -1.28
LIG3P49916 PRDX1P1-201ENST00000449329 596 ntBASIC7.06□□□□□ -1.28
LIG3P49916 ARL13A-202ENST00000450049 1102 ntAPPRIS P1 TSL 5 BASIC7.06□□□□□ -1.28
LIG3P49916 CALM1P2-201ENST00000452941 448 ntBASIC7.06□□□□□ -1.28
LIG3P49916 AL450345.1-201ENST00000456118 311 ntTSL 3 BASIC7.06□□□□□ -1.28
LIG3P49916 PLGLA-202ENST00000482249 475 ntTSL 3 BASIC7.06□□□□□ -1.28
LIG3P49916 AC068724.1-201ENST00000487100 792 ntBASIC7.06□□□□□ -1.28
LIG3P49916 AC104090.1-201ENST00000506341 1171 ntBASIC7.06□□□□□ -1.28
LIG3P49916 AC012055.1-201ENST00000511346 1144 ntTSL 3 BASIC7.06□□□□□ -1.28
LIG3P49916 LINC02100-201ENST00000512978 238 ntTSL 3 BASIC7.06□□□□□ -1.28
Retrieved 100 of 98,524 protein–RNA pairs in 85.1 ms