Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AC073610.1-201ENST00000489971 396 ntBASIC6.69□□□□□ -1.34
SMARCA1P28370 FO393419.2-201ENST00000492975 428 ntTSL 3 BASIC6.69□□□□□ -1.34
SMARCA1P28370 NADK2-AS1-201ENST00000501794 720 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
SMARCA1P28370 RN7SKP67-201ENST00000515905 235 ntBASIC6.69□□□□□ -1.34
SMARCA1P28370 SCARNA6.1-201ENST00000516989 238 ntBASIC6.69□□□□□ -1.34
SMARCA1P28370 NSMCE2-202ENST00000517315 996 ntTSL 3 BASIC6.69□□□□□ -1.34
SMARCA1P28370 PKIA-AS1-201ENST00000519242 995 ntTSL 5 BASIC6.69□□□□□ -1.34
SMARCA1P28370 OR8X1P-201ENST00000534542 869 ntBASIC6.69□□□□□ -1.34
SMARCA1P28370 AC004217.2-201ENST00000547401 751 ntTSL 3 BASIC6.69□□□□□ -1.34
SMARCA1P28370 AL161757.2-201ENST00000553800 421 ntTSL 3 BASIC6.69□□□□□ -1.34
SMARCA1P28370 LINC00929-203ENST00000556213 713 ntTSL 2 BASIC6.69□□□□□ -1.34
SMARCA1P28370 AC079414.1-201ENST00000563114 488 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
SMARCA1P28370 AC009097.1-201ENST00000567077 406 ntTSL 3 BASIC6.69□□□□□ -1.34
SMARCA1P28370 ZNF208-204ENST00000599916 740 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
SMARCA1P28370 AP005431.1-201ENST00000618479 319 ntBASIC6.69□□□□□ -1.34
SMARCA1P28370 IGF2BP3-218ENST00000619562 2126 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
SMARCA1P28370 PIGX-210ENST00000639143 831 ntAPPRIS ALT2 TSL 2 BASIC6.69□□□□□ -1.34
SMARCA1P28370 UGP2-232ENST00000640075 567 ntTSL 5 BASIC6.69□□□□□ -1.34
SMARCA1P28370 CEP85L-201ENST00000360290 1736 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
SMARCA1P28370 LZTFL1-215ENST00000536047 4342 ntTSL 2 BASIC6.69□□□□□ -1.34
SMARCA1P28370 NRCAM-210ENST00000425651 3915 ntAPPRIS ALT2 TSL 1 (best) BASIC6.69□□□□□ -1.34
SMARCA1P28370 ZNF24-201ENST00000261332 6307 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
SMARCA1P28370 FRK-201ENST00000606080 13230 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
SMARCA1P28370 ZNF436-201ENST00000314011 4071 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
SMARCA1P28370 Z95114.1-201ENST00000624264 14574 ntBASIC6.69□□□□□ -1.34
SMARCA1P28370 RBMY1F-201ENST00000303766 1887 ntAPPRIS P5 TSL 1 (best) BASIC6.68□□□□□ -1.34
SMARCA1P28370 MTOR-202ENST00000376838 4017 ntTSL 2 BASIC6.68□□□□□ -1.34
SMARCA1P28370 AP004243.1-201ENST00000529108 1433 ntAPPRIS P1 TSL 5 BASIC6.68□□□□□ -1.34
SMARCA1P28370 MRE11-203ENST00000393241 2604 ntAPPRIS ALT1 TSL 5 BASIC6.68□□□□□ -1.34
SMARCA1P28370 DNM1L-201ENST00000266481 3101 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
SMARCA1P28370 AHNAK2-201ENST00000333244 18254 ntAPPRIS P1 TSL 5 BASIC6.68□□□□□ -1.34
SMARCA1P28370 AC084816.1-210ENST00000540895 1920 ntTSL 2 BASIC6.68□□□□□ -1.34
SMARCA1P28370 ESRRG-205ENST00000366937 5365 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
SMARCA1P28370 DCDC1-207ENST00000452803 1706 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
SMARCA1P28370 DDX18P6-201ENST00000450119 1997 ntBASIC6.68□□□□□ -1.34
SMARCA1P28370 SLC26A5-208ENST00000393730 2498 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
SMARCA1P28370 FILIP1L-202ENST00000354552 3970 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
SMARCA1P28370 OR2AT4-204ENST00000641593 8733 ntAPPRIS P1 BASIC6.68□□□□□ -1.34
SMARCA1P28370 ZNF195-201ENST00000005082 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC6.68□□□□□ -1.34
SMARCA1P28370 DEFB118-201ENST00000253381 1158 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
SMARCA1P28370 AL159987.1-201ENST00000347911 293 ntBASIC6.68□□□□□ -1.34
SMARCA1P28370 SNORD115-48-201ENST00000364764 76 ntBASIC6.68□□□□□ -1.34
SMARCA1P28370 HIST1H3PS1-201ENST00000404612 417 ntBASIC6.68□□□□□ -1.34
SMARCA1P28370 AL391863.2-201ENST00000411838 681 ntTSL 2 BASIC6.68□□□□□ -1.34
SMARCA1P28370 AL357752.1-201ENST00000412817 349 ntBASIC6.68□□□□□ -1.34
SMARCA1P28370 AC097717.1-233ENST00000413557 460 ntTSL 3 BASIC6.68□□□□□ -1.34
SMARCA1P28370 IFNA17-201ENST00000413767 980 ntAPPRIS P1 BASIC6.68□□□□□ -1.34
SMARCA1P28370 SDHDP6-201ENST00000414693 480 ntBASIC6.68□□□□□ -1.34
SMARCA1P28370 NIFKP3-201ENST00000417799 865 ntBASIC6.68□□□□□ -1.34
SMARCA1P28370 OR5W1P-201ENST00000423705 938 ntBASIC6.68□□□□□ -1.34
SMARCA1P28370 AC127526.2-201ENST00000426436 775 ntBASIC6.68□□□□□ -1.34
SMARCA1P28370 LINC01473-202ENST00000427108 695 ntTSL 5 BASIC6.68□□□□□ -1.34
SMARCA1P28370 AL031428.1-201ENST00000427154 666 ntTSL 2 BASIC6.68□□□□□ -1.34
SMARCA1P28370 RPL12P16-201ENST00000431098 498 ntBASIC6.68□□□□□ -1.34
SMARCA1P28370 AL139280.1-201ENST00000436340 463 ntTSL 3 BASIC6.68□□□□□ -1.34
SMARCA1P28370 KRT8P51-201ENST00000438938 274 ntBASIC6.68□□□□□ -1.34
SMARCA1P28370 ELOCP3-201ENST00000439303 348 ntBASIC6.68□□□□□ -1.34
SMARCA1P28370 AC017074.2-201ENST00000439382 607 ntTSL 2 BASIC6.68□□□□□ -1.34
SMARCA1P28370 LINC00380-201ENST00000442478 353 ntTSL 2 BASIC6.68□□□□□ -1.34
SMARCA1P28370 AC007000.2-201ENST00000442564 487 ntBASIC6.68□□□□□ -1.34
SMARCA1P28370 SUMO2P1-206ENST00000445436 284 ntBASIC6.68□□□□□ -1.34
SMARCA1P28370 CNTN4-AS2-201ENST00000447256 426 ntTSL 3 BASIC6.68□□□□□ -1.34
SMARCA1P28370 HMGN1P5-201ENST00000448591 263 ntBASIC6.68□□□□□ -1.34
SMARCA1P28370 LRRC37A14P-201ENST00000452297 462 ntBASIC6.68□□□□□ -1.34
SMARCA1P28370 RPSAP37-201ENST00000470913 821 ntBASIC6.68□□□□□ -1.34
SMARCA1P28370 AC022215.1-201ENST00000481770 362 ntBASIC6.68□□□□□ -1.34
SMARCA1P28370 RPL23AP73-201ENST00000492507 471 ntBASIC6.68□□□□□ -1.34
SMARCA1P28370 LINC01017-201ENST00000508823 768 ntTSL 3 BASIC6.68□□□□□ -1.34
SMARCA1P28370 LINC02432-203ENST00000511213 719 ntTSL 2 BASIC6.68□□□□□ -1.34
SMARCA1P28370 AC018682.2-201ENST00000517716 399 ntTSL 5 BASIC6.68□□□□□ -1.34
SMARCA1P28370 AC062004.1-202ENST00000524014 246 ntTSL 5 BASIC6.68□□□□□ -1.34
SMARCA1P28370 IGLV3-30-201ENST00000524362 298 ntBASIC6.68□□□□□ -1.34
SMARCA1P28370 RSF1-IT2-201ENST00000529656 566 ntTSL 5 BASIC6.68□□□□□ -1.34
SMARCA1P28370 OR4A6P-201ENST00000534364 970 ntBASIC6.68□□□□□ -1.34
SMARCA1P28370 AC078820.1-201ENST00000548702 742 ntTSL 3 BASIC6.68□□□□□ -1.34
SMARCA1P28370 AC004551.1-201ENST00000552784 575 ntTSL 4 BASIC6.68□□□□□ -1.34
SMARCA1P28370 AC025423.4-201ENST00000553141 785 ntTSL 3 BASIC6.68□□□□□ -1.34
SMARCA1P28370 AC009396.1-201ENST00000553628 1079 ntTSL 2 BASIC6.68□□□□□ -1.34
SMARCA1P28370 MORF4L1-205ENST00000558502 855 ntTSL 3 BASIC6.68□□□□□ -1.34
SMARCA1P28370 AC096947.1-201ENST00000603233 470 ntBASIC6.68□□□□□ -1.34
SMARCA1P28370 AL133481.2-203ENST00000607558 139 ntBASIC6.68□□□□□ -1.34
SMARCA1P28370 CR589904.2-201ENST00000612533 440 ntBASIC6.68□□□□□ -1.34
SMARCA1P28370 AP001962.1-201ENST00000624114 559 ntBASIC6.68□□□□□ -1.34
SMARCA1P28370 MCM3AP-AS1-204ENST00000432735 2302 ntTSL 2 BASIC6.68□□□□□ -1.34
SMARCA1P28370 AC091305.2-201ENST00000624049 1576 ntBASIC6.68□□□□□ -1.34
SMARCA1P28370 ASAH2-202ENST00000395526 6880 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
SMARCA1P28370 LINC01179-201ENST00000507838 2163 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
SMARCA1P28370 LINC02141-201ENST00000568279 6586 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
SMARCA1P28370 SERPINB7-202ENST00000398019 2203 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
SMARCA1P28370 NOL8-221ENST00000542053 3393 ntTSL 5 BASIC6.68□□□□□ -1.34
SMARCA1P28370 ADAM21-201ENST00000603540 2658 ntAPPRIS P1 TSL 3 BASIC6.67□□□□□ -1.34
SMARCA1P28370 IKZF2-210ENST00000451136 9344 ntTSL 5 BASIC6.67□□□□□ -1.34
SMARCA1P28370 MARCH7-201ENST00000259050 5922 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
SMARCA1P28370 KIAA1328-202ENST00000586135 1863 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
SMARCA1P28370 ZNF480-205ENST00000595962 4738 ntAPPRIS P3 TSL 1 (best) BASIC6.67□□□□□ -1.34
SMARCA1P28370 TCF7L2-219ENST00000542695 4136 ntTSL 5 BASIC6.67□□□□□ -1.34
SMARCA1P28370 HIST1H1A-201ENST00000244573 648 ntAPPRIS P1 BASIC6.67□□□□□ -1.34
SMARCA1P28370 GABRG3-201ENST00000333743 1235 ntTSL 5 BASIC6.67□□□□□ -1.34
SMARCA1P28370 POU1F1-201ENST00000344265 1149 ntTSL 5 BASIC6.67□□□□□ -1.34
SMARCA1P28370 RNA5SP394-201ENST00000364216 119 ntBASIC6.67□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 118.4 ms