Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 NBPF8-201ENST00000583271 5330 ntBASIC5.21□□□□□ -1.58
COL5A1P20908 MR1-209ENST00000617803 7584 ntTSL 5 BASIC5.21□□□□□ -1.58
COL5A1P20908 MKL2-202ENST00000571589 8799 ntAPPRIS ALT2 TSL 2 BASIC5.21□□□□□ -1.58
COL5A1P20908 NBPF12-203ENST00000611443 5594 ntTSL 5 BASIC5.21□□□□□ -1.58
COL5A1P20908 FLJ12825-201ENST00000515617 3942 ntTSL 2 BASIC5.21□□□□□ -1.58
COL5A1P20908 SLC1A3-201ENST00000265113 4170 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
COL5A1P20908 ATF7IP-222ENST00000544627 4847 ntAPPRIS ALT2 TSL 1 (best) BASIC5.21□□□□□ -1.58
COL5A1P20908 SLMAP-208ENST00000449503 4027 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
COL5A1P20908 PPHLN1-225ENST00000619544 1449 ntTSL 5 BASIC5.21□□□□□ -1.58
COL5A1P20908 VPS50-202ENST00000305866 3613 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.58
COL5A1P20908 NCOA7-201ENST00000229634 2998 ntAPPRIS ALT2 TSL 2 BASIC5.21□□□□□ -1.58
COL5A1P20908 AC115220.1-201ENST00000330020 1453 ntAPPRIS P1 TSL 3 BASIC5.21□□□□□ -1.58
COL5A1P20908 MGAM2-201ENST00000477922 7867 ntAPPRIS P1 TSL 5 BASIC5.21□□□□□ -1.58
COL5A1P20908 LY6G5C-210ENST00000383237 674 ntAPPRIS P2 TSL 1 (best) BASIC5.2□□□□□ -1.58
COL5A1P20908 AL354863.1-202ENST00000431695 494 ntTSL 5 BASIC5.2□□□□□ -1.58
COL5A1P20908 Z92846.1-201ENST00000456203 268 ntBASIC5.2□□□□□ -1.58
COL5A1P20908 LINC00601-201ENST00000456514 1168 ntTSL 3 BASIC5.2□□□□□ -1.58
COL5A1P20908 AC068587.1-201ENST00000483613 781 ntBASIC5.2□□□□□ -1.58
COL5A1P20908 PTPN20-212ENST00000502254 599 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
COL5A1P20908 AL929601.2-201ENST00000549951 381 ntTSL 4 BASIC5.2□□□□□ -1.58
COL5A1P20908 LINC00871-201ENST00000555246 408 ntTSL 5 BASIC5.2□□□□□ -1.58
COL5A1P20908 MIR3934-201ENST00000579806 107 ntBASIC5.2□□□□□ -1.58
COL5A1P20908 ZNF227-204ENST00000586228 569 ntTSL 2 BASIC5.2□□□□□ -1.58
COL5A1P20908 ELSPBP1-205ENST00000597519 557 ntTSL 3 BASIC5.2□□□□□ -1.58
COL5A1P20908 MIR4500HG-205ENST00000606590 579 ntTSL 4 BASIC5.2□□□□□ -1.58
COL5A1P20908 MYOCOS-202ENST00000636788 1039 ntAPPRIS ALT2 TSL 5 BASIC5.2□□□□□ -1.58
COL5A1P20908 UGP2-232ENST00000640075 567 ntTSL 5 BASIC5.2□□□□□ -1.58
COL5A1P20908 OPRM1-215ENST00000520708 1519 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
COL5A1P20908 UTP14C-201ENST00000521776 5529 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
COL5A1P20908 EHBP1-202ENST00000405015 4108 ntAPPRIS ALT2 TSL 2 BASIC5.2□□□□□ -1.58
COL5A1P20908 MDM4-216ENST00000616250 9597 ntTSL 5 BASIC5.2□□□□□ -1.58
COL5A1P20908 ZNF273-204ENST00000476120 2000 ntAPPRIS P1 TSL 3 BASIC5.2□□□□□ -1.58
COL5A1P20908 SEMA6D-210ENST00000558816 4419 ntTSL 5 BASIC5.2□□□□□ -1.58
COL5A1P20908 OR1E1-201ENST00000322608 1307 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
COL5A1P20908 OR4F13P-202ENST00000560066 2054 ntBASIC5.2□□□□□ -1.58
COL5A1P20908 AC010401.2-201ENST00000575137 4934 ntBASIC5.2□□□□□ -1.58
COL5A1P20908 SLC12A6-216ENST00000560164 3744 ntTSL 2 BASIC5.2□□□□□ -1.58
COL5A1P20908 AC006600.2-201ENST00000624834 2506 ntBASIC5.2□□□□□ -1.58
COL5A1P20908 AC091045.1-201ENST00000561460 2277 ntTSL 5 BASIC5.2□□□□□ -1.58
COL5A1P20908 CASP1-215ENST00000533400 2001 ntAPPRIS P4 TSL 1 (best) BASIC5.2□□□□□ -1.58
COL5A1P20908 ERP27-201ENST00000266397 2096 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
COL5A1P20908 EPS15P1-202ENST00000459691 2071 ntBASIC5.2□□□□□ -1.58
COL5A1P20908 CEP290-207ENST00000552810 7948 ntAPPRIS P2 TSL 1 (best) BASIC5.2□□□□□ -1.58
COL5A1P20908 ACACA-240ENST00000617649 7912 ntTSL 5 BASIC5.2□□□□□ -1.58
COL5A1P20908 TMEM8B-202ENST00000377991 14112 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
COL5A1P20908 DDX58-201ENST00000379868 4089 ntTSL 5 BASIC5.2□□□□□ -1.58
COL5A1P20908 AC068138.1-201ENST00000412635 217 ntBASIC5.2□□□□□ -1.58
COL5A1P20908 C9orf57-202ENST00000424431 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC5.2□□□□□ -1.58
COL5A1P20908 IGBP1P3-201ENST00000447449 1000 ntBASIC5.2□□□□□ -1.58
COL5A1P20908 MOCS2-205ENST00000508922 1210 ntTSL 5 BASIC5.2□□□□□ -1.58
COL5A1P20908 AP001574.1-201ENST00000519566 546 ntTSL 4 BASIC5.2□□□□□ -1.58
COL5A1P20908 AP002373.2-201ENST00000541631 1060 ntBASIC5.2□□□□□ -1.58
COL5A1P20908 AC104938.1-202ENST00000563041 630 ntTSL 3 BASIC5.2□□□□□ -1.58
COL5A1P20908 MOCS2-209ENST00000582677 741 ntTSL 5 BASIC5.2□□□□□ -1.58
COL5A1P20908 AC093799.2-201ENST00000610062 578 ntBASIC5.2□□□□□ -1.58
COL5A1P20908 AC044839.1-205ENST00000614989 542 ntTSL 5 BASIC5.2□□□□□ -1.58
COL5A1P20908 SERPINB10-204ENST00000619595 1194 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
COL5A1P20908 LINC00850-201ENST00000629221 685 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
COL5A1P20908 INTS2-207ENST00000617492 5805 ntTSL 5 BASIC5.2□□□□□ -1.58
COL5A1P20908 SYCP2L-207ENST00000543878 2436 ntAPPRIS ALT2 TSL 5 BASIC5.2□□□□□ -1.58
COL5A1P20908 OR5AN1-202ENST00000641850 8468 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
COL5A1P20908 FOXJ3-209ENST00000545068 5165 ntAPPRIS P3 TSL 5 BASIC5.2□□□□□ -1.58
COL5A1P20908 MROH2B-201ENST00000399564 5239 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
COL5A1P20908 ADH4-207ENST00000505590 1400 ntTSL 5 BASIC5.19□□□□□ -1.58
COL5A1P20908 OR51G2-202ENST00000641926 3326 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
COL5A1P20908 AC092747.4-201ENST00000620519 1861 ntBASIC5.19□□□□□ -1.58
COL5A1P20908 SENP1-201ENST00000448372 4679 ntAPPRIS P2 TSL 1 (best) BASIC5.19□□□□□ -1.58
COL5A1P20908 LGI1-219ENST00000636155 1618 ntTSL 5 BASIC5.19□□□□□ -1.58
COL5A1P20908 CLEC12A-202ENST00000350667 699 ntAPPRIS ALT2 TSL 1 (best) BASIC5.19□□□□□ -1.58
COL5A1P20908 RN7SKP149-201ENST00000363008 344 ntBASIC5.19□□□□□ -1.58
COL5A1P20908 AL009179.1-201ENST00000406085 265 ntBASIC5.19□□□□□ -1.58
COL5A1P20908 AL354868.1-201ENST00000417077 482 ntBASIC5.19□□□□□ -1.58
COL5A1P20908 AL591468.1-201ENST00000417932 573 ntTSL 3 BASIC5.19□□□□□ -1.58
COL5A1P20908 ARPP21-218ENST00000438071 1103 ntTSL 3 BASIC5.19□□□□□ -1.58
COL5A1P20908 LINC01359-203ENST00000444349 381 ntTSL 5 BASIC5.19□□□□□ -1.58
COL5A1P20908 LINC02210-201ENST00000444561 288 ntBASIC5.19□□□□□ -1.58
COL5A1P20908 AL161722.1-201ENST00000446972 1032 ntBASIC5.19□□□□□ -1.58
COL5A1P20908 RPS3AP53-201ENST00000454716 778 ntBASIC5.19□□□□□ -1.58
COL5A1P20908 RN7SL205P-201ENST00000490174 284 ntBASIC5.19□□□□□ -1.58
COL5A1P20908 AC011389.1-201ENST00000509170 594 ntTSL 4 BASIC5.19□□□□□ -1.58
COL5A1P20908 LINC02429-202ENST00000513836 694 ntTSL 3 BASIC5.19□□□□□ -1.58
COL5A1P20908 GAPDHP62-201ENST00000515313 990 ntBASIC5.19□□□□□ -1.58
COL5A1P20908 RNA5SP373-201ENST00000517271 95 ntBASIC5.19□□□□□ -1.58
COL5A1P20908 AP001267.3-204ENST00000528578 423 ntTSL 3 BASIC5.19□□□□□ -1.58
COL5A1P20908 AC134349.2-201ENST00000535136 910 ntBASIC5.19□□□□□ -1.58
COL5A1P20908 CA1-224ENST00000542576 1236 ntAPPRIS P1 TSL 5 BASIC5.19□□□□□ -1.58
COL5A1P20908 AAGAB-203ENST00000542650 1015 ntTSL 2 BASIC5.19□□□□□ -1.58
COL5A1P20908 AC008149.1-201ENST00000551844 525 ntTSL 4 BASIC5.19□□□□□ -1.58
COL5A1P20908 RN7SL52P-201ENST00000584271 284 ntBASIC5.19□□□□□ -1.58
COL5A1P20908 AL121989.1-201ENST00000585888 746 ntTSL 3 BASIC5.19□□□□□ -1.58
COL5A1P20908 AC073575.2-201ENST00000614212 627 ntBASIC5.19□□□□□ -1.58
COL5A1P20908 AC083809.1-201ENST00000615051 472 ntBASIC5.19□□□□□ -1.58
COL5A1P20908 RN7SL722P-201ENST00000617780 284 ntBASIC5.19□□□□□ -1.58
COL5A1P20908 RN7SL565P-201ENST00000618246 284 ntBASIC5.19□□□□□ -1.58
COL5A1P20908 AC069542.2-201ENST00000624816 216 ntBASIC5.19□□□□□ -1.58
COL5A1P20908 GBA3-205ENST00000511446 2018 ntTSL 2 BASIC5.19□□□□□ -1.58
COL5A1P20908 ADGRL3-204ENST00000506720 4962 ntAPPRIS ALT2 TSL 5 BASIC5.19□□□□□ -1.58
COL5A1P20908 ESRRG-205ENST00000366937 5365 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
COL5A1P20908 VPS41-203ENST00000395969 3181 ntTSL 5 BASIC5.19□□□□□ -1.58
COL5A1P20908 TLR4-202ENST00000394487 3908 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 81.1 ms