Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AL354766.1-201ENST00000423396 542 ntBASIC4.96□□□□□ -1.62
NKX3-1Q99801 AL391704.3-201ENST00000425365 831 ntTSL 3 BASIC4.96□□□□□ -1.62
NKX3-1Q99801 AL445528.1-201ENST00000426330 420 ntBASIC4.96□□□□□ -1.62
NKX3-1Q99801 PMCHL1-204ENST00000430902 659 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
NKX3-1Q99801 AC003991.1-210ENST00000434733 1048 ntTSL 3 BASIC4.96□□□□□ -1.62
NKX3-1Q99801 TXNP2-201ENST00000443918 295 ntBASIC4.96□□□□□ -1.62
NKX3-1Q99801 AC005772.1-201ENST00000446671 976 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
NKX3-1Q99801 AL161722.1-201ENST00000446972 1032 ntBASIC4.96□□□□□ -1.62
NKX3-1Q99801 CYCSP53-201ENST00000455540 265 ntBASIC4.96□□□□□ -1.62
NKX3-1Q99801 RNU1-88P-201ENST00000459274 128 ntBASIC4.96□□□□□ -1.62
NKX3-1Q99801 IQCJ-SCHIP1-AS1-201ENST00000460574 508 ntTSL 3 BASIC4.96□□□□□ -1.62
NKX3-1Q99801 AC023194.2-201ENST00000465398 406 ntBASIC4.96□□□□□ -1.62
NKX3-1Q99801 RPSAP51-201ENST00000497462 645 ntBASIC4.96□□□□□ -1.62
NKX3-1Q99801 LINC02488-201ENST00000504287 652 ntTSL 2 BASIC4.96□□□□□ -1.62
NKX3-1Q99801 AC098829.1-202ENST00000513384 537 ntTSL 3 BASIC4.96□□□□□ -1.62
NKX3-1Q99801 SETP21-201ENST00000514799 892 ntBASIC4.96□□□□□ -1.62
NKX3-1Q99801 AC117525.1-201ENST00000515228 503 ntBASIC4.96□□□□□ -1.62
NKX3-1Q99801 GAPDHP62-201ENST00000515313 990 ntBASIC4.96□□□□□ -1.62
NKX3-1Q99801 OR8K2P-201ENST00000524645 927 ntBASIC4.96□□□□□ -1.62
NKX3-1Q99801 KCTD21-AS1-203ENST00000527321 586 ntTSL 3 BASIC4.96□□□□□ -1.62
NKX3-1Q99801 AC027369.2-201ENST00000528030 440 ntBASIC4.96□□□□□ -1.62
NKX3-1Q99801 AC103855.3-201ENST00000528445 606 ntTSL 5 BASIC4.96□□□□□ -1.62
NKX3-1Q99801 AP002370.2-202ENST00000533669 908 ntTSL 5 BASIC4.96□□□□□ -1.62
NKX3-1Q99801 CCDC60-203ENST00000536742 886 ntAPPRIS ALT2 TSL 2 BASIC4.96□□□□□ -1.62
NKX3-1Q99801 OR6C68-201ENST00000548615 939 ntAPPRIS P1 BASIC4.96□□□□□ -1.62
NKX3-1Q99801 LINC01579-205ENST00000556447 791 ntTSL 4 BASIC4.96□□□□□ -1.62
NKX3-1Q99801 LINC00687-203ENST00000558175 696 ntTSL 3 BASIC4.96□□□□□ -1.62
NKX3-1Q99801 LINC01572-205ENST00000570152 360 ntTSL 3 BASIC4.96□□□□□ -1.62
NKX3-1Q99801 LINC01906-201ENST00000582962 499 ntTSL 4 BASIC4.96□□□□□ -1.62
NKX3-1Q99801 AC117569.1-201ENST00000584482 739 ntTSL 3 BASIC4.96□□□□□ -1.62
NKX3-1Q99801 AC008507.3-201ENST00000585753 472 ntBASIC4.96□□□□□ -1.62
NKX3-1Q99801 ADAD1P2-201ENST00000588476 646 ntBASIC4.96□□□□□ -1.62
NKX3-1Q99801 AC010511.1-202ENST00000590229 573 ntTSL 4 BASIC4.96□□□□□ -1.62
NKX3-1Q99801 AC005972.3-201ENST00000606304 481 ntBASIC4.96□□□□□ -1.62
NKX3-1Q99801 ASNSD1-208ENST00000607690 535 ntTSL 2 BASIC4.96□□□□□ -1.62
NKX3-1Q99801 AC104836.2-201ENST00000609675 1293 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
NKX3-1Q99801 AC092266.1-201ENST00000610958 165 ntBASIC4.96□□□□□ -1.62
NKX3-1Q99801 CCL23-201ENST00000612516 569 ntAPPRIS ALT2 TSL 1 (best) BASIC4.96□□□□□ -1.62
NKX3-1Q99801 AC015712.7-201ENST00000615211 635 ntBASIC4.96□□□□□ -1.62
NKX3-1Q99801 ELSPBP1-206ENST00000619003 893 ntAPPRIS ALT2 TSL 5 BASIC4.96□□□□□ -1.62
NKX3-1Q99801 AC010266.2-201ENST00000564741 3255 ntBASIC4.96□□□□□ -1.62
NKX3-1Q99801 RWDD2A-201ENST00000369724 3744 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
NKX3-1Q99801 BRAFP1-201ENST00000445336 2703 ntBASIC4.96□□□□□ -1.62
NKX3-1Q99801 KIAA0391-209ENST00000604948 1706 ntAPPRIS ALT2 TSL 2 BASIC4.96□□□□□ -1.62
NKX3-1Q99801 IL7R-201ENST00000303115 4626 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
NKX3-1Q99801 KLHL28-201ENST00000355081 2177 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
NKX3-1Q99801 STON1-201ENST00000404752 5511 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
NKX3-1Q99801 DTNA-231ENST00000598774 2418 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
NKX3-1Q99801 SERPINB7-207ENST00000546027 1951 ntAPPRIS P1 TSL 2 BASIC4.96□□□□□ -1.62
NKX3-1Q99801 MAMDC2-AS1-201ENST00000377178 1504 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
NKX3-1Q99801 ZNF230-201ENST00000429154 4115 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
NKX3-1Q99801 KYAT3-203ENST00000370491 1868 ntAPPRIS ALT1 TSL 2 BASIC4.96□□□□□ -1.62
NKX3-1Q99801 KIAA1328-202ENST00000586135 1863 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
NKX3-1Q99801 GART-205ENST00000381839 3469 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
NKX3-1Q99801 RBPJP7-201ENST00000442803 1447 ntBASIC4.96□□□□□ -1.62
NKX3-1Q99801 RBPJP5-201ENST00000449433 1447 ntBASIC4.96□□□□□ -1.62
NKX3-1Q99801 USP16-201ENST00000334352 3004 ntAPPRIS P3 TSL 5 BASIC4.96□□□□□ -1.62
NKX3-1Q99801 RPGRIP1L-212ENST00000621565 6038 ntAPPRIS ALT1 TSL 1 (best) BASIC4.96□□□□□ -1.62
NKX3-1Q99801 SLC9B1P1-201ENST00000331172 1337 ntBASIC4.96□□□□□ -1.62
NKX3-1Q99801 RASSF8-216ENST00000615708 1328 ntTSL 5 BASIC4.96□□□□□ -1.62
NKX3-1Q99801 SFT2D2-201ENST00000271375 11040 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
NKX3-1Q99801 MPDZ-212ENST00000538841 3186 ntTSL 2 BASIC4.96□□□□□ -1.62
NKX3-1Q99801 ZNF347-202ENST00000452676 4553 ntAPPRIS ALT2 TSL 2 BASIC4.96□□□□□ -1.62
NKX3-1Q99801 SYTL2-208ENST00000524452 2733 ntAPPRIS P3 TSL 2 BASIC4.95□□□□□ -1.62
NKX3-1Q99801 C1orf27-201ENST00000287859 3792 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
NKX3-1Q99801 SLC26A5-207ENST00000393729 2422 ntTSL 5 BASIC4.95□□□□□ -1.62
NKX3-1Q99801 PCDH15-201ENST00000320301 6845 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
NKX3-1Q99801 AC006145.1-201ENST00000439234 2651 ntTSL 2 BASIC4.95□□□□□ -1.62
NKX3-1Q99801 LIMA1-212ENST00000552491 2652 ntAPPRIS ALT2 TSL 2 BASIC4.95□□□□□ -1.62
NKX3-1Q99801 C12orf50-201ENST00000298699 1722 ntAPPRIS P1 TSL 2 BASIC4.95□□□□□ -1.62
NKX3-1Q99801 PCDH15-215ENST00000409834 5401 ntTSL 5 BASIC4.95□□□□□ -1.62
NKX3-1Q99801 ZNF480-204ENST00000490272 2238 ntTSL 2 BASIC4.95□□□□□ -1.62
NKX3-1Q99801 PSG4-201ENST00000244295 1629 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
NKX3-1Q99801 AC087565.3-202ENST00000642085 1603 ntBASIC4.95□□□□□ -1.62
NKX3-1Q99801 OR4C11-201ENST00000302231 1045 ntAPPRIS P1 BASIC4.95□□□□□ -1.62
NKX3-1Q99801 OR4S2-201ENST00000312422 936 ntAPPRIS P1 BASIC4.95□□□□□ -1.62
NKX3-1Q99801 RN7SKP145-201ENST00000363291 303 ntBASIC4.95□□□□□ -1.62
NKX3-1Q99801 AL357752.1-201ENST00000412817 349 ntBASIC4.95□□□□□ -1.62
NKX3-1Q99801 HNRNPA1P29-201ENST00000426409 879 ntBASIC4.95□□□□□ -1.62
NKX3-1Q99801 FAR1P1-201ENST00000427163 934 ntBASIC4.95□□□□□ -1.62
NKX3-1Q99801 ISM1-AS1-201ENST00000431407 652 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
NKX3-1Q99801 LINC00383-201ENST00000433664 817 ntTSL 3 BASIC4.95□□□□□ -1.62
NKX3-1Q99801 LINC00446-202ENST00000438327 357 ntTSL 3 BASIC4.95□□□□□ -1.62
NKX3-1Q99801 TMEM244-202ENST00000438392 565 ntAPPRIS P1 TSL 5 BASIC4.95□□□□□ -1.62
NKX3-1Q99801 MTND6P5-201ENST00000448266 512 ntBASIC4.95□□□□□ -1.62
NKX3-1Q99801 AP003774.2-202ENST00000449694 341 ntTSL 3 BASIC4.95□□□□□ -1.62
NKX3-1Q99801 AL122019.1-202ENST00000458070 546 ntTSL 5 BASIC4.95□□□□□ -1.62
NKX3-1Q99801 ACA64.1-201ENST00000459171 127 ntBASIC4.95□□□□□ -1.62
NKX3-1Q99801 AC023245.1-201ENST00000468501 517 ntBASIC4.95□□□□□ -1.62
NKX3-1Q99801 AC012123.2-201ENST00000485809 248 ntBASIC4.95□□□□□ -1.62
NKX3-1Q99801 RBBP4P1-201ENST00000502424 1276 ntBASIC4.95□□□□□ -1.62
NKX3-1Q99801 RNU6-760P-201ENST00000516078 97 ntBASIC4.95□□□□□ -1.62
NKX3-1Q99801 AC091819.1-201ENST00000518330 630 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
NKX3-1Q99801 AL121594.2-201ENST00000541658 472 ntBASIC4.95□□□□□ -1.62
NKX3-1Q99801 CYCSP38-201ENST00000559840 322 ntBASIC4.95□□□□□ -1.62
NKX3-1Q99801 DISC1FP1-202ENST00000562245 774 ntTSL 3 BASIC4.95□□□□□ -1.62
NKX3-1Q99801 AC019322.1-201ENST00000571869 389 ntBASIC4.95□□□□□ -1.62
NKX3-1Q99801 AC139099.3-202ENST00000574856 439 ntTSL 2 BASIC4.95□□□□□ -1.62
NKX3-1Q99801 AC010487.1-201ENST00000594408 1172 ntBASIC4.95□□□□□ -1.62
NKX3-1Q99801 ZNF486-202ENST00000597083 734 ntTSL 3 BASIC4.95□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 120.1 ms