Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 CALCOCO2-204ENST00000448105 1916 ntTSL 2 BASIC5.58□□□□□ -1.52
VPS35Q96QK1 RAB30-212ENST00000533486 9929 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
VPS35Q96QK1 KLRC4-KLRK1-201ENST00000539300 1507 ntAPPRIS P5 TSL 2 BASIC5.58□□□□□ -1.52
VPS35Q96QK1 ATXN2-215ENST00000542287 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC5.58□□□□□ -1.52
VPS35Q96QK1 ZNF33A-202ENST00000374618 6122 ntTSL 4 BASIC5.57□□□□□ -1.52
VPS35Q96QK1 ADH4-207ENST00000505590 1400 ntTSL 5 BASIC5.57□□□□□ -1.52
VPS35Q96QK1 DMTF1-204ENST00000413276 3548 ntTSL 5 BASIC5.57□□□□□ -1.52
VPS35Q96QK1 MOSPD2-201ENST00000380492 4163 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
VPS35Q96QK1 AP005432.1-201ENST00000580891 3485 ntBASIC5.57□□□□□ -1.52
VPS35Q96QK1 C12orf50-201ENST00000298699 1722 ntAPPRIS P1 TSL 2 BASIC5.57□□□□□ -1.52
VPS35Q96QK1 KIAA0391-209ENST00000604948 1706 ntAPPRIS ALT2 TSL 2 BASIC5.57□□□□□ -1.52
VPS35Q96QK1 EEF1A1P33-201ENST00000554413 1362 ntBASIC5.57□□□□□ -1.52
VPS35Q96QK1 PSG7-201ENST00000406070 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
VPS35Q96QK1 SEC31A-226ENST00000508479 3397 ntTSL 2 BASIC5.57□□□□□ -1.52
VPS35Q96QK1 MCM3AP-AS1-204ENST00000432735 2302 ntTSL 2 BASIC5.57□□□□□ -1.52
VPS35Q96QK1 AL929601.4-201ENST00000613011 1341 ntBASIC5.57□□□□□ -1.52
VPS35Q96QK1 AL160286.3-201ENST00000569644 3294 ntTSL 2 BASIC5.57□□□□□ -1.52
VPS35Q96QK1 MID2-202ENST00000443968 2251 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
VPS35Q96QK1 TRIQK-206ENST00000518748 3563 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
VPS35Q96QK1 AC138907.8-201ENST00000623981 2256 ntBASIC5.57□□□□□ -1.52
VPS35Q96QK1 ITGB3BP-201ENST00000271002 948 ntAPPRIS P3 TSL 1 (best) BASIC5.57□□□□□ -1.52
VPS35Q96QK1 OR51Q1-201ENST00000300778 1096 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
VPS35Q96QK1 GAPDHP24-201ENST00000328713 983 ntBASIC5.57□□□□□ -1.52
VPS35Q96QK1 RNA5SP435-201ENST00000364044 108 ntBASIC5.57□□□□□ -1.52
VPS35Q96QK1 AC005042.1-201ENST00000393397 800 ntBASIC5.57□□□□□ -1.52
VPS35Q96QK1 BCL11A-205ENST00000409351 756 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
VPS35Q96QK1 Z98742.1-201ENST00000419801 632 ntTSL 3 BASIC5.57□□□□□ -1.52
VPS35Q96QK1 AL390115.1-201ENST00000425271 423 ntTSL 5 BASIC5.57□□□□□ -1.52
VPS35Q96QK1 AL021153.1-201ENST00000427360 308 ntTSL 3 BASIC5.57□□□□□ -1.52
VPS35Q96QK1 FMO7P-201ENST00000436045 768 ntBASIC5.57□□□□□ -1.52
VPS35Q96QK1 NANOGP9-201ENST00000439890 892 ntBASIC5.57□□□□□ -1.52
VPS35Q96QK1 AL392089.1-202ENST00000444793 449 ntTSL 2 BASIC5.57□□□□□ -1.52
VPS35Q96QK1 AL596266.1-201ENST00000448132 400 ntBASIC5.57□□□□□ -1.52
VPS35Q96QK1 AL450023.1-201ENST00000450868 751 ntBASIC5.57□□□□□ -1.52
VPS35Q96QK1 LDHBP2-201ENST00000456969 1005 ntBASIC5.57□□□□□ -1.52
VPS35Q96QK1 SNORD125-201ENST00000459538 96 ntBASIC5.57□□□□□ -1.52
VPS35Q96QK1 RPL5P16-201ENST00000471467 790 ntBASIC5.57□□□□□ -1.52
VPS35Q96QK1 AC090142.2-201ENST00000483263 416 ntBASIC5.57□□□□□ -1.52
VPS35Q96QK1 LINC02129-201ENST00000564381 692 ntTSL 5 BASIC5.57□□□□□ -1.52
VPS35Q96QK1 AC010547.7-201ENST00000570323 333 ntBASIC5.57□□□□□ -1.52
VPS35Q96QK1 AC010503.3-201ENST00000594355 540 ntBASIC5.57□□□□□ -1.52
VPS35Q96QK1 Z98949.1-203ENST00000597284 851 ntTSL 5 BASIC5.57□□□□□ -1.52
VPS35Q96QK1 CDC42EP3P1-201ENST00000601004 764 ntBASIC5.57□□□□□ -1.52
VPS35Q96QK1 AC008115.3-201ENST00000614874 549 ntBASIC5.57□□□□□ -1.52
VPS35Q96QK1 LINC00850-201ENST00000629221 685 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
VPS35Q96QK1 OR51Q1-202ENST00000641085 1096 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
VPS35Q96QK1 MEPE-202ENST00000395102 2123 ntAPPRIS ALT2 TSL 5 BASIC5.57□□□□□ -1.52
VPS35Q96QK1 ZNF107-205ENST00000613690 5589 ntAPPRIS ALT2 TSL 5 BASIC5.57□□□□□ -1.52
VPS35Q96QK1 ADAM29-203ENST00000445694 3244 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
VPS35Q96QK1 MYO5A-201ENST00000356338 11971 ntAPPRIS ALT1 TSL 1 (best) BASIC5.57□□□□□ -1.52
VPS35Q96QK1 CACNB4-243ENST00000637217 8188 ntTSL 5 BASIC5.57□□□□□ -1.52
VPS35Q96QK1 ZNF347-202ENST00000452676 4553 ntAPPRIS ALT2 TSL 2 BASIC5.57□□□□□ -1.52
VPS35Q96QK1 HSPD1P7-201ENST00000447985 1686 ntBASIC5.56□□□□□ -1.52
VPS35Q96QK1 PIK3C3-201ENST00000262039 9443 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
VPS35Q96QK1 EEF1A1P14-201ENST00000421195 1376 ntBASIC5.56□□□□□ -1.52
VPS35Q96QK1 ZNF260-204ENST00000592282 5055 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
VPS35Q96QK1 LINC01478-201ENST00000587877 2068 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
VPS35Q96QK1 MAK-203ENST00000474039 3859 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
VPS35Q96QK1 PPP1R9A-206ENST00000433360 5369 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
VPS35Q96QK1 AGBL4-201ENST00000334103 881 ntTSL 5 BASIC5.56□□□□□ -1.52
VPS35Q96QK1 AL121886.1-201ENST00000358609 435 ntBASIC5.56□□□□□ -1.52
VPS35Q96QK1 U3.10-201ENST00000364459 214 ntBASIC5.56□□□□□ -1.52
VPS35Q96QK1 ZRSR2-202ENST00000380308 744 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
VPS35Q96QK1 LINC00308-201ENST00000419431 727 ntTSL 5 BASIC5.56□□□□□ -1.52
VPS35Q96QK1 EIF4A1P7-201ENST00000421800 1220 ntBASIC5.56□□□□□ -1.52
VPS35Q96QK1 AL391987.2-201ENST00000421848 492 ntTSL 5 BASIC5.56□□□□□ -1.52
VPS35Q96QK1 AL133173.1-201ENST00000423458 397 ntBASIC5.56□□□□□ -1.52
VPS35Q96QK1 HMGN2P27-201ENST00000427352 270 ntBASIC5.56□□□□□ -1.52
VPS35Q96QK1 NFYAP1-201ENST00000431953 972 ntBASIC5.56□□□□□ -1.52
VPS35Q96QK1 AL353751.1-203ENST00000437032 603 ntTSL 3 BASIC5.56□□□□□ -1.52
VPS35Q96QK1 AC073909.1-201ENST00000447112 999 ntBASIC5.56□□□□□ -1.52
VPS35Q96QK1 YWHAEP1-201ENST00000453697 763 ntBASIC5.56□□□□□ -1.52
VPS35Q96QK1 OARD1-207ENST00000468811 819 ntAPPRIS P1 TSL 2 BASIC5.56□□□□□ -1.52
VPS35Q96QK1 RPS17P5-201ENST00000498293 408 ntBASIC5.56□□□□□ -1.52
VPS35Q96QK1 LINC02147-201ENST00000509367 807 ntTSL 2 BASIC5.56□□□□□ -1.52
VPS35Q96QK1 AC140125.1-201ENST00000515739 684 ntTSL 5 BASIC5.56□□□□□ -1.52
VPS35Q96QK1 IGLVIV-64-201ENST00000518581 301 ntBASIC5.56□□□□□ -1.52
VPS35Q96QK1 POLR2K-203ENST00000522439 543 ntTSL 2 BASIC5.56□□□□□ -1.52
VPS35Q96QK1 AL133166.1-205ENST00000548306 569 ntTSL 4 BASIC5.56□□□□□ -1.52
VPS35Q96QK1 AC022404.1-201ENST00000555320 273 ntBASIC5.56□□□□□ -1.52
VPS35Q96QK1 AC090970.1-201ENST00000561207 381 ntTSL 5 BASIC5.56□□□□□ -1.52
VPS35Q96QK1 RBM22P12-201ENST00000567098 1255 ntBASIC5.56□□□□□ -1.52
VPS35Q96QK1 H3F3BP2-201ENST00000583907 357 ntBASIC5.56□□□□□ -1.52
VPS35Q96QK1 ZNF667-AS1-207ENST00000592146 668 ntTSL 5 BASIC5.56□□□□□ -1.52
VPS35Q96QK1 HCG18-243ENST00000602498 327 ntTSL 3 BASIC5.56□□□□□ -1.52
VPS35Q96QK1 FO393422.1-201ENST00000603908 708 ntBASIC5.56□□□□□ -1.52
VPS35Q96QK1 AC025574.2-201ENST00000615621 514 ntBASIC5.56□□□□□ -1.52
VPS35Q96QK1 AJ009632.2-203ENST00000634708 1205 ntTSL 5 BASIC5.56□□□□□ -1.52
VPS35Q96QK1 AFP-201ENST00000226359 1914 ntTSL 5 BASIC5.56□□□□□ -1.52
VPS35Q96QK1 DCN-202ENST00000393155 2133 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
VPS35Q96QK1 ZNF26-201ENST00000328654 17601 ntAPPRIS P3 TSL 1 (best) BASIC5.56□□□□□ -1.52
VPS35Q96QK1 HERC4-205ENST00000412272 4211 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
VPS35Q96QK1 OR4F13P-202ENST00000560066 2054 ntBASIC5.55□□□□□ -1.52
VPS35Q96QK1 FBXL13-207ENST00000455112 2274 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
VPS35Q96QK1 SLFN5-201ENST00000299977 10591 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
VPS35Q96QK1 AC019072.1-201ENST00000604535 1551 ntBASIC5.55□□□□□ -1.52
VPS35Q96QK1 PTPRB-202ENST00000334414 12316 ntAPPRIS P4 TSL 1 (best) BASIC5.55□□□□□ -1.52
VPS35Q96QK1 AC005703.1-201ENST00000431343 1773 ntTSL 2 BASIC5.55□□□□□ -1.52
VPS35Q96QK1 MYBPC1-221ENST00000551300 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC5.55□□□□□ -1.52
VPS35Q96QK1 PIGK-202ENST00000370812 4596 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 10.8 ms