Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 RAD17-220ENST00000616683 3057 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
VPS39Q96JC1 AC027228.2-201ENST00000567141 2154 ntBASIC5.62□□□□□ -1.51
VPS39Q96JC1 CLCN5-202ENST00000376088 10108 ntTSL 2 BASIC5.62□□□□□ -1.51
VPS39Q96JC1 PRKAA1-204ENST00000397128 5088 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
VPS39Q96JC1 TMSB4XP2-201ENST00000335179 210 ntBASIC5.62□□□□□ -1.51
VPS39Q96JC1 RNU1-150P-201ENST00000362491 162 ntBASIC5.62□□□□□ -1.51
VPS39Q96JC1 RNA5SP477-201ENST00000362639 119 ntBASIC5.62□□□□□ -1.51
VPS39Q96JC1 GPR52-201ENST00000367685 1088 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
VPS39Q96JC1 CCL8-201ENST00000394620 1261 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
VPS39Q96JC1 HMGB3P7-201ENST00000400214 611 ntBASIC5.62□□□□□ -1.51
VPS39Q96JC1 RPS6P23-201ENST00000413224 722 ntBASIC5.62□□□□□ -1.51
VPS39Q96JC1 OR51A6P-201ENST00000418680 1004 ntBASIC5.62□□□□□ -1.51
VPS39Q96JC1 AC009506.2-201ENST00000420635 840 ntBASIC5.62□□□□□ -1.51
VPS39Q96JC1 AC004990.1-201ENST00000431722 564 ntTSL 4 BASIC5.62□□□□□ -1.51
VPS39Q96JC1 AL031186.1-201ENST00000433125 385 ntTSL 3 BASIC5.62□□□□□ -1.51
VPS39Q96JC1 PCBP2P1-201ENST00000437262 977 ntBASIC5.62□□□□□ -1.51
VPS39Q96JC1 AC019117.1-202ENST00000439046 589 ntTSL 3 BASIC5.62□□□□□ -1.51
VPS39Q96JC1 AL158850.1-201ENST00000441249 914 ntTSL 3 BASIC5.62□□□□□ -1.51
VPS39Q96JC1 AL021940.1-201ENST00000454271 677 ntTSL 2 BASIC5.62□□□□□ -1.51
VPS39Q96JC1 RPSAP37-201ENST00000470913 821 ntBASIC5.62□□□□□ -1.51
VPS39Q96JC1 RPS17P15-201ENST00000475609 349 ntBASIC5.62□□□□□ -1.51
VPS39Q96JC1 ST20-201ENST00000478497 1004 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
VPS39Q96JC1 SEC22A-207ENST00000481965 673 ntTSL 3 BASIC5.62□□□□□ -1.51
VPS39Q96JC1 PRB1-202ENST00000500254 775 ntAPPRIS P3 TSL 1 (best) BASIC5.62□□□□□ -1.51
VPS39Q96JC1 SNORA70.11-201ENST00000515987 138 ntBASIC5.62□□□□□ -1.51
VPS39Q96JC1 SNORA70.13-201ENST00000516116 138 ntBASIC5.62□□□□□ -1.51
VPS39Q96JC1 Y_RNA.667-201ENST00000516212 107 ntBASIC5.62□□□□□ -1.51
VPS39Q96JC1 RNA5SP438-201ENST00000516561 112 ntBASIC5.62□□□□□ -1.51
VPS39Q96JC1 IGLV3-24-201ENST00000517477 197 ntBASIC5.62□□□□□ -1.51
VPS39Q96JC1 MAL2-207ENST00000522828 603 ntTSL 3 BASIC5.62□□□□□ -1.51
VPS39Q96JC1 AC018442.3-201ENST00000523025 183 ntBASIC5.62□□□□□ -1.51
VPS39Q96JC1 ALG9-IT1-201ENST00000531305 684 ntTSL 3 BASIC5.62□□□□□ -1.51
VPS39Q96JC1 GPRC5D-AS1-205ENST00000540198 404 ntTSL 5 BASIC5.62□□□□□ -1.51
VPS39Q96JC1 HSPE1P2-201ENST00000554777 306 ntBASIC5.62□□□□□ -1.51
VPS39Q96JC1 CASC22-201ENST00000569713 386 ntTSL 5 BASIC5.62□□□□□ -1.51
VPS39Q96JC1 AL137246.1-201ENST00000607072 977 ntBASIC5.62□□□□□ -1.51
VPS39Q96JC1 AC021766.1-201ENST00000624404 741 ntBASIC5.62□□□□□ -1.51
VPS39Q96JC1 NEK3-211ENST00000629912 141 ntTSL 5 BASIC5.62□□□□□ -1.51
VPS39Q96JC1 AC123912.3-201ENST00000600907 1367 ntBASIC5.62□□□□□ -1.51
VPS39Q96JC1 CD164-207ENST00000504373 1402 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
VPS39Q96JC1 OSBPL9P1-201ENST00000604744 1469 ntBASIC5.62□□□□□ -1.51
VPS39Q96JC1 ZNF271P-205ENST00000639248 4573 ntTSL 5 BASIC5.62□□□□□ -1.51
VPS39Q96JC1 NKAIN2-204ENST00000545433 3052 ntTSL 5 BASIC5.62□□□□□ -1.51
VPS39Q96JC1 AC245100.4-204ENST00000635587 1555 ntTSL 5 BASIC5.62□□□□□ -1.51
VPS39Q96JC1 EDA2R-203ENST00000396050 3429 ntAPPRIS ALT2 TSL 5 BASIC5.62□□□□□ -1.51
VPS39Q96JC1 DROSHA-212ENST00000511367 5305 ntAPPRIS P4 TSL 1 (best) BASIC5.62□□□□□ -1.51
VPS39Q96JC1 AC083899.1-201ENST00000454465 3819 ntBASIC5.62□□□□□ -1.51
VPS39Q96JC1 OR52A5-201ENST00000307388 3973 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
VPS39Q96JC1 OR52A5-202ENST00000642125 3993 ntAPPRIS P1 BASIC5.62□□□□□ -1.51
VPS39Q96JC1 AC067956.1-201ENST00000414512 2062 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
VPS39Q96JC1 PHTF2-208ENST00000450574 2516 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
VPS39Q96JC1 ABCC9-204ENST00000538350 2672 ntTSL 2 BASIC5.61□□□□□ -1.51
VPS39Q96JC1 ARHGAP24-201ENST00000264343 4572 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
VPS39Q96JC1 GABRG3-201ENST00000333743 1235 ntTSL 5 BASIC5.61□□□□□ -1.51
VPS39Q96JC1 RNA5SP30-201ENST00000365552 115 ntBASIC5.61□□□□□ -1.51
VPS39Q96JC1 YPEL5-202ENST00000379519 2499 ntAPPRIS P1 TSL 2 BASIC5.61□□□□□ -1.51
VPS39Q96JC1 RAB5CP1-201ENST00000395972 580 ntBASIC5.61□□□□□ -1.51
VPS39Q96JC1 VN1R12P-201ENST00000403778 876 ntBASIC5.61□□□□□ -1.51
VPS39Q96JC1 NENFP1-201ENST00000419476 466 ntBASIC5.61□□□□□ -1.51
VPS39Q96JC1 AL136131.2-201ENST00000424283 348 ntTSL 3 BASIC5.61□□□□□ -1.51
VPS39Q96JC1 LINC01690-201ENST00000424837 576 ntTSL 2 BASIC5.61□□□□□ -1.51
VPS39Q96JC1 LINC02528-202ENST00000434437 535 ntTSL 2 BASIC5.61□□□□□ -1.51
VPS39Q96JC1 GYPE-202ENST00000437468 499 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
VPS39Q96JC1 AL450472.1-201ENST00000439434 405 ntTSL 2 BASIC5.61□□□□□ -1.51
VPS39Q96JC1 AL359265.1-201ENST00000440296 795 ntBASIC5.61□□□□□ -1.51
VPS39Q96JC1 AP000470.1-201ENST00000448063 693 ntTSL 5 BASIC5.61□□□□□ -1.51
VPS39Q96JC1 ACA64.1-201ENST00000459171 127 ntBASIC5.61□□□□□ -1.51
VPS39Q96JC1 RN7SL188P-201ENST00000469842 285 ntBASIC5.61□□□□□ -1.51
VPS39Q96JC1 AP002884.1-201ENST00000479691 655 ntBASIC5.61□□□□□ -1.51
VPS39Q96JC1 RPL7AP10-201ENST00000481016 791 ntBASIC5.61□□□□□ -1.51
VPS39Q96JC1 OR11I1P-201ENST00000486033 954 ntBASIC5.61□□□□□ -1.51
VPS39Q96JC1 CSNK1A1P3-201ENST00000504105 330 ntBASIC5.61□□□□□ -1.51
VPS39Q96JC1 UCHL1-AS1-201ENST00000507190 592 ntTSL 4 BASIC5.61□□□□□ -1.51
VPS39Q96JC1 DUTP7-201ENST00000507982 486 ntBASIC5.61□□□□□ -1.51
VPS39Q96JC1 LINC02223-202ENST00000511596 578 ntTSL 5 BASIC5.61□□□□□ -1.51
VPS39Q96JC1 AC004052.1-201ENST00000514327 567 ntTSL 4 BASIC5.61□□□□□ -1.51
VPS39Q96JC1 HAND2-AS1-235ENST00000515376 951 ntTSL 3 BASIC5.61□□□□□ -1.51
VPS39Q96JC1 AP000648.1-201ENST00000529682 397 ntBASIC5.61□□□□□ -1.51
VPS39Q96JC1 IFNG-AS1-203ENST00000541715 902 ntTSL 3 BASIC5.61□□□□□ -1.51
VPS39Q96JC1 AL121790.1-201ENST00000554829 738 ntTSL 3 BASIC5.61□□□□□ -1.51
VPS39Q96JC1 AC009120.4-201ENST00000564455 513 ntTSL 5 BASIC5.61□□□□□ -1.51
VPS39Q96JC1 MIR4311-201ENST00000580794 100 ntBASIC5.61□□□□□ -1.51
VPS39Q96JC1 H3F3BP2-201ENST00000583907 357 ntBASIC5.61□□□□□ -1.51
VPS39Q96JC1 AL354740.1-205ENST00000586413 1230 ntTSL 5 BASIC5.61□□□□□ -1.51
VPS39Q96JC1 AC015802.3-201ENST00000590241 570 ntTSL 4 BASIC5.61□□□□□ -1.51
VPS39Q96JC1 AC239809.3-206ENST00000596091 741 ntTSL 5 BASIC5.61□□□□□ -1.51
VPS39Q96JC1 ZNF486-202ENST00000597083 734 ntTSL 3 BASIC5.61□□□□□ -1.51
VPS39Q96JC1 AC092070.2-201ENST00000597550 545 ntTSL 4 BASIC5.61□□□□□ -1.51
VPS39Q96JC1 DTNA-230ENST00000598334 3201 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
VPS39Q96JC1 AC092316.1-201ENST00000598703 297 ntTSL 5 BASIC5.61□□□□□ -1.51
VPS39Q96JC1 AC010271.1-201ENST00000599050 558 ntTSL 4 BASIC5.61□□□□□ -1.51
VPS39Q96JC1 RMDN2-AS1-203ENST00000601029 613 ntTSL 5 BASIC5.61□□□□□ -1.51
VPS39Q96JC1 AC002069.2-201ENST00000603580 883 ntBASIC5.61□□□□□ -1.51
VPS39Q96JC1 AC019072.1-201ENST00000604535 1551 ntBASIC5.61□□□□□ -1.51
VPS39Q96JC1 AL031601.1-201ENST00000605702 394 ntBASIC5.61□□□□□ -1.51
VPS39Q96JC1 AL139124.1-201ENST00000609123 421 ntBASIC5.61□□□□□ -1.51
VPS39Q96JC1 PROX1-AS1-219ENST00000610094 791 ntTSL 5 BASIC5.61□□□□□ -1.51
VPS39Q96JC1 RBPJP2-201ENST00000618187 1444 ntBASIC5.61□□□□□ -1.51
VPS39Q96JC1 AC007491.1-202ENST00000637961 1576 ntTSL 5 BASIC5.61□□□□□ -1.51
VPS39Q96JC1 AC019197.1-201ENST00000638199 3611 ntTSL 5 BASIC5.61□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 106 ms