Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 ZNF254-208ENST00000616028 3886 ntTSL 4 BASIC5.68□□□□□ -1.5
VMP1Q96GC9 AL603840.1-201ENST00000422374 4063 ntTSL 2 BASIC5.68□□□□□ -1.5
VMP1Q96GC9 SLFN13-201ENST00000285013 8469 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
VMP1Q96GC9 AC024587.1-201ENST00000505925 2157 ntBASIC5.68□□□□□ -1.5
VMP1Q96GC9 MIR130B-202ENST00000385018 82 ntBASIC5.68□□□□□ -1.5
VMP1Q96GC9 AC004386.1-201ENST00000393214 761 ntBASIC5.68□□□□□ -1.5
VMP1Q96GC9 TMBIM4-203ENST00000398033 844 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
VMP1Q96GC9 RPA3-204ENST00000406109 434 ntTSL 3 BASIC5.68□□□□□ -1.5
VMP1Q96GC9 AC245096.1-201ENST00000413104 546 ntBASIC5.68□□□□□ -1.5
VMP1Q96GC9 IFNA17-201ENST00000413767 980 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
VMP1Q96GC9 BTF3P9-201ENST00000418784 283 ntBASIC5.68□□□□□ -1.5
VMP1Q96GC9 NENFP1-201ENST00000419476 466 ntBASIC5.68□□□□□ -1.5
VMP1Q96GC9 HSPE1P16-201ENST00000426640 348 ntBASIC5.68□□□□□ -1.5
VMP1Q96GC9 GAPDHP34-201ENST00000432112 823 ntBASIC5.68□□□□□ -1.5
VMP1Q96GC9 AC009227.2-201ENST00000432599 511 ntTSL 3 BASIC5.68□□□□□ -1.5
VMP1Q96GC9 AL031186.1-201ENST00000433125 385 ntTSL 3 BASIC5.68□□□□□ -1.5
VMP1Q96GC9 AC046176.1-201ENST00000435260 1170 ntBASIC5.68□□□□□ -1.5
VMP1Q96GC9 AC110602.1-201ENST00000437414 318 ntBASIC5.68□□□□□ -1.5
VMP1Q96GC9 CACYBPP1-201ENST00000438592 684 ntBASIC5.68□□□□□ -1.5
VMP1Q96GC9 ATP6V1E1P1-201ENST00000439215 681 ntBASIC5.68□□□□□ -1.5
VMP1Q96GC9 AL450263.2-201ENST00000439400 589 ntBASIC5.68□□□□□ -1.5
VMP1Q96GC9 ATP5LP2-201ENST00000440646 311 ntBASIC5.68□□□□□ -1.5
VMP1Q96GC9 FHP1-201ENST00000442741 703 ntBASIC5.68□□□□□ -1.5
VMP1Q96GC9 CASP3P1-201ENST00000446037 609 ntBASIC5.68□□□□□ -1.5
VMP1Q96GC9 AC243772.1-201ENST00000451620 410 ntBASIC5.68□□□□□ -1.5
VMP1Q96GC9 AC112495.1-201ENST00000456037 756 ntTSL 5 BASIC5.68□□□□□ -1.5
VMP1Q96GC9 AC005304.1-201ENST00000457609 405 ntTSL 3 BASIC5.68□□□□□ -1.5
VMP1Q96GC9 RPS27L-205ENST00000462430 681 ntTSL 2 BASIC5.68□□□□□ -1.5
VMP1Q96GC9 AC025566.1-201ENST00000477153 490 ntTSL 3 BASIC5.68□□□□□ -1.5
VMP1Q96GC9 AC092865.4-201ENST00000477936 615 ntBASIC5.68□□□□□ -1.5
VMP1Q96GC9 AC008443.2-201ENST00000499096 566 ntTSL 2 BASIC5.68□□□□□ -1.5
VMP1Q96GC9 TMEM108-AS1-201ENST00000504993 705 ntTSL 3 BASIC5.68□□□□□ -1.5
VMP1Q96GC9 B4GALNT2P1-201ENST00000508857 307 ntBASIC5.68□□□□□ -1.5
VMP1Q96GC9 MOCS2-206ENST00000510818 1251 ntTSL 5 BASIC5.68□□□□□ -1.5
VMP1Q96GC9 AC008957.1-202ENST00000512329 681 ntTSL 3 BASIC5.68□□□□□ -1.5
VMP1Q96GC9 AC067904.2-201ENST00000517322 1283 ntBASIC5.68□□□□□ -1.5
VMP1Q96GC9 IGHVII-60-1-201ENST00000519079 256 ntBASIC5.68□□□□□ -1.5
VMP1Q96GC9 AP002370.2-201ENST00000531424 545 ntTSL 3 BASIC5.68□□□□□ -1.5
VMP1Q96GC9 AC068993.1-201ENST00000546724 589 ntBASIC5.68□□□□□ -1.5
VMP1Q96GC9 LINC02412-201ENST00000552584 1269 ntTSL 5 BASIC5.68□□□□□ -1.5
VMP1Q96GC9 LINC00929-203ENST00000556213 713 ntTSL 2 BASIC5.68□□□□□ -1.5
VMP1Q96GC9 AC073964.1-201ENST00000558938 308 ntTSL 3 BASIC5.68□□□□□ -1.5
VMP1Q96GC9 AC087501.3-201ENST00000576477 513 ntTSL 5 BASIC5.68□□□□□ -1.5
VMP1Q96GC9 STARD6-202ENST00000577499 696 ntTSL 2 BASIC5.68□□□□□ -1.5
VMP1Q96GC9 AC005703.3-201ENST00000579159 373 ntTSL 3 BASIC5.68□□□□□ -1.5
VMP1Q96GC9 LINC01906-201ENST00000582962 499 ntTSL 4 BASIC5.68□□□□□ -1.5
VMP1Q96GC9 AC100863.1-201ENST00000584843 560 ntTSL 4 BASIC5.68□□□□□ -1.5
VMP1Q96GC9 MOCS2-210ENST00000584946 736 ntTSL 5 BASIC5.68□□□□□ -1.5
VMP1Q96GC9 AC020916.2-201ENST00000591242 360 ntBASIC5.68□□□□□ -1.5
VMP1Q96GC9 AC003991.1-201ENST00000594469 484 ntTSL 5 BASIC5.68□□□□□ -1.5
VMP1Q96GC9 MIR6778-201ENST00000617912 73 ntBASIC5.68□□□□□ -1.5
VMP1Q96GC9 AC245014.3-201ENST00000618589 347 ntBASIC5.68□□□□□ -1.5
VMP1Q96GC9 LINC01206-233ENST00000630063 878 ntTSL 5 BASIC5.68□□□□□ -1.5
VMP1Q96GC9 AC073488.3-201ENST00000631611 778 ntBASIC5.68□□□□□ -1.5
VMP1Q96GC9 C11orf54-206ENST00000528099 1862 ntAPPRIS P1 TSL 2 BASIC5.68□□□□□ -1.5
VMP1Q96GC9 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
VMP1Q96GC9 PHC3-217ENST00000497658 2087 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
VMP1Q96GC9 ASAH2-203ENST00000443575 1942 ntTSL 5 BASIC5.68□□□□□ -1.5
VMP1Q96GC9 DAZ2-203ENST00000382424 3853 ntAPPRIS ALT2 TSL 5 BASIC5.68□□□□□ -1.5
VMP1Q96GC9 SEPT7-203ENST00000399035 4066 ntAPPRIS ALT1 TSL 5 BASIC5.68□□□□□ -1.5
VMP1Q96GC9 DTNA-229ENST00000598142 2509 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
VMP1Q96GC9 TBC1D15-201ENST00000319106 2159 ntTSL 2 BASIC5.67□□□□□ -1.5
VMP1Q96GC9 MROH2B-201ENST00000399564 5239 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
VMP1Q96GC9 ZNF610-208ENST00000613461 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC5.67□□□□□ -1.5
VMP1Q96GC9 RBPJP7-201ENST00000442803 1447 ntBASIC5.67□□□□□ -1.5
VMP1Q96GC9 RBPJP5-201ENST00000449433 1447 ntBASIC5.67□□□□□ -1.5
VMP1Q96GC9 RRM1-201ENST00000300738 3076 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
VMP1Q96GC9 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
VMP1Q96GC9 SLAIN1-204ENST00000358679 2075 ntAPPRIS P3 TSL 2 BASIC5.67□□□□□ -1.5
VMP1Q96GC9 NSD1-204ENST00000439151 12892 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
VMP1Q96GC9 ZC3H12B-201ENST00000338957 7256 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
VMP1Q96GC9 PPP2R2A-201ENST00000315985 1878 ntAPPRIS ALT1 TSL 2 BASIC5.67□□□□□ -1.5
VMP1Q96GC9 IPCEF1-202ENST00000367220 1658 ntAPPRIS ALT2 TSL 2 BASIC5.67□□□□□ -1.5
VMP1Q96GC9 RGS6-204ENST00000404301 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC5.67□□□□□ -1.5
VMP1Q96GC9 RGS6-206ENST00000407322 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC5.67□□□□□ -1.5
VMP1Q96GC9 AC008163.1-201ENST00000636281 1455 ntTSL 5 BASIC5.67□□□□□ -1.5
VMP1Q96GC9 LAMTOR3-202ENST00000499666 4226 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
VMP1Q96GC9 PSMA3-201ENST00000216455 970 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
VMP1Q96GC9 RN7SKP275-201ENST00000364626 301 ntBASIC5.67□□□□□ -1.5
VMP1Q96GC9 OR2B3-201ENST00000377173 1106 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
VMP1Q96GC9 SNORA5.1-201ENST00000384275 131 ntBASIC5.67□□□□□ -1.5
VMP1Q96GC9 MIR7-1-201ENST00000384871 110 ntBASIC5.67□□□□□ -1.5
VMP1Q96GC9 SETP15-201ENST00000412724 337 ntBASIC5.67□□□□□ -1.5
VMP1Q96GC9 AL096829.1-201ENST00000413677 457 ntBASIC5.67□□□□□ -1.5
VMP1Q96GC9 AL138733.1-201ENST00000415477 853 ntTSL 5 BASIC5.67□□□□□ -1.5
VMP1Q96GC9 AC068286.1-201ENST00000416173 467 ntTSL 4 BASIC5.67□□□□□ -1.5
VMP1Q96GC9 C7orf69-201ENST00000418326 675 ntTSL 4 BASIC5.67□□□□□ -1.5
VMP1Q96GC9 AL691447.1-201ENST00000419456 387 ntBASIC5.67□□□□□ -1.5
VMP1Q96GC9 RPS15AP30-201ENST00000420976 390 ntBASIC5.67□□□□□ -1.5
VMP1Q96GC9 OR5M12P-201ENST00000423388 929 ntBASIC5.67□□□□□ -1.5
VMP1Q96GC9 AC104170.2-201ENST00000424246 678 ntTSL 3 BASIC5.67□□□□□ -1.5
VMP1Q96GC9 AL583785.1-201ENST00000428006 512 ntTSL 2 BASIC5.67□□□□□ -1.5
VMP1Q96GC9 FTO-202ENST00000431610 707 ntTSL 3 BASIC5.67□□□□□ -1.5
VMP1Q96GC9 AP000295.1-201ENST00000433395 1000 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
VMP1Q96GC9 RPL5P25-201ENST00000441148 775 ntBASIC5.67□□□□□ -1.5
VMP1Q96GC9 AL158850.1-201ENST00000441249 914 ntTSL 3 BASIC5.67□□□□□ -1.5
VMP1Q96GC9 AL035416.1-201ENST00000443012 767 ntTSL 2 BASIC5.67□□□□□ -1.5
VMP1Q96GC9 ZNF619P1-201ENST00000446539 752 ntBASIC5.67□□□□□ -1.5
VMP1Q96GC9 AL157385.1-201ENST00000446973 268 ntBASIC5.67□□□□□ -1.5
VMP1Q96GC9 AC107072.1-201ENST00000449007 110 ntTSL 3 BASIC5.67□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 71.9 ms