Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 RNU6-792P-201ENST00000363490 107 ntBASIC6.33□□□□□ -1.4
USP39Q53GS9 CFHR4-203ENST00000367418 1066 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
USP39Q53GS9 ZNF602P-201ENST00000405929 924 ntBASIC6.33□□□□□ -1.4
USP39Q53GS9 AC090960.1-201ENST00000421072 306 ntBASIC6.33□□□□□ -1.4
USP39Q53GS9 AC079355.1-201ENST00000421770 223 ntBASIC6.33□□□□□ -1.4
USP39Q53GS9 AC234781.2-201ENST00000426370 994 ntBASIC6.33□□□□□ -1.4
USP39Q53GS9 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC6.33□□□□□ -1.4
USP39Q53GS9 AL161636.2-201ENST00000445179 927 ntBASIC6.33□□□□□ -1.4
USP39Q53GS9 AC104653.1-202ENST00000446401 390 ntTSL 3 BASIC6.33□□□□□ -1.4
USP39Q53GS9 AC073359.1-201ENST00000486545 521 ntTSL 2 BASIC6.33□□□□□ -1.4
USP39Q53GS9 PANCR-201ENST00000503456 493 ntTSL 5 BASIC6.33□□□□□ -1.4
USP39Q53GS9 AC106864.1-201ENST00000510655 640 ntTSL 3 BASIC6.33□□□□□ -1.4
USP39Q53GS9 AC011632.2-201ENST00000520696 738 ntTSL 3 BASIC6.33□□□□□ -1.4
USP39Q53GS9 XIRP2-AS1-201ENST00000525330 776 ntTSL 3 BASIC6.33□□□□□ -1.4
USP39Q53GS9 MRE11-209ENST00000540013 1212 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
USP39Q53GS9 OLR1-210ENST00000544577 924 ntTSL 5 BASIC6.33□□□□□ -1.4
USP39Q53GS9 AC089998.2-201ENST00000551856 277 ntTSL 3 BASIC6.33□□□□□ -1.4
USP39Q53GS9 AC022523.1-201ENST00000560360 364 ntTSL 5 BASIC6.33□□□□□ -1.4
USP39Q53GS9 PWRN1-210ENST00000568045 1299 ntTSL 2 BASIC6.33□□□□□ -1.4
USP39Q53GS9 AC020909.2-201ENST00000595005 626 ntTSL 2 BASIC6.33□□□□□ -1.4
USP39Q53GS9 AC011492.1-201ENST00000600023 315 ntBASIC6.33□□□□□ -1.4
USP39Q53GS9 AC027243.2-201ENST00000602530 724 ntBASIC6.33□□□□□ -1.4
USP39Q53GS9 UBE2E3-208ENST00000602632 446 ntTSL 2 BASIC6.33□□□□□ -1.4
USP39Q53GS9 LINC00632-204ENST00000602830 597 ntTSL 4 BASIC6.33□□□□□ -1.4
USP39Q53GS9 AC126175.1-201ENST00000617041 758 ntBASIC6.33□□□□□ -1.4
USP39Q53GS9 MALAT1-214ENST00000618925 424 ntTSL 5 BASIC6.33□□□□□ -1.4
USP39Q53GS9 REV3L-214ENST00000619481 969 ntTSL 5 BASIC6.33□□□□□ -1.4
USP39Q53GS9 PPP3CB-AS1-213ENST00000620302 501 ntTSL 5 BASIC6.33□□□□□ -1.4
USP39Q53GS9 ZNF479-203ENST00000620639 1239 ntTSL 5 BASIC6.33□□□□□ -1.4
USP39Q53GS9 AC021422.1-201ENST00000621212 473 ntBASIC6.33□□□□□ -1.4
USP39Q53GS9 LINC01587-204ENST00000623565 873 ntTSL 2 BASIC6.33□□□□□ -1.4
USP39Q53GS9 AC006927.3-201ENST00000638789 384 ntBASIC6.33□□□□□ -1.4
USP39Q53GS9 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
USP39Q53GS9 ZNF402P-201ENST00000404435 3100 ntBASIC6.33□□□□□ -1.4
USP39Q53GS9 MNS1-201ENST00000260453 2023 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
USP39Q53GS9 PIGN-220ENST00000638167 4195 ntTSL 5 BASIC6.33□□□□□ -1.4
USP39Q53GS9 ESRRG-203ENST00000361395 5216 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
USP39Q53GS9 ESRRG-209ENST00000408911 5216 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
USP39Q53GS9 IQCG-201ENST00000265239 2262 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
USP39Q53GS9 DNM1P47-203ENST00000571780 12667 ntBASIC6.33□□□□□ -1.4
USP39Q53GS9 DTNA-228ENST00000597674 1732 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
USP39Q53GS9 STMN2-201ENST00000220876 2223 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
USP39Q53GS9 OFD1P8Y-201ENST00000449148 1433 ntBASIC6.33□□□□□ -1.4
USP39Q53GS9 RARSP1-201ENST00000542842 1418 ntBASIC6.33□□□□□ -1.4
USP39Q53GS9 IPO8-209ENST00000544829 3212 ntTSL 2 BASIC6.33□□□□□ -1.4
USP39Q53GS9 DHRS9-205ENST00000432060 1652 ntTSL 2 BASIC6.33□□□□□ -1.4
USP39Q53GS9 PHEX-AS1-201ENST00000424650 1906 ntTSL 2 BASIC6.33□□□□□ -1.4
USP39Q53GS9 ZNF528-203ENST00000391788 4209 ntTSL 2 BASIC6.33□□□□□ -1.4
USP39Q53GS9 GSTCD-202ENST00000394728 2416 ntAPPRIS P1 TSL 5 BASIC6.33□□□□□ -1.4
USP39Q53GS9 AC011504.1-201ENST00000623331 4103 ntBASIC6.32□□□□□ -1.4
USP39Q53GS9 KIAA0586-203ENST00000423743 5339 ntAPPRIS ALT2 TSL 1 (best) BASIC6.32□□□□□ -1.4
USP39Q53GS9 RFX3-212ENST00000617270 9253 ntAPPRIS P1 TSL 2 BASIC6.32□□□□□ -1.4
USP39Q53GS9 DSC1-201ENST00000257197 4271 ntAPPRIS ALT1 TSL 1 (best) BASIC6.32□□□□□ -1.4
USP39Q53GS9 AC087516.2-201ENST00000558963 3042 ntTSL 3 BASIC6.32□□□□□ -1.4
USP39Q53GS9 TRAF5-201ENST00000261464 3972 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
USP39Q53GS9 NEK2P2-201ENST00000438441 1338 ntBASIC6.32□□□□□ -1.4
USP39Q53GS9 DCTN5-201ENST00000300087 11011 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
USP39Q53GS9 LINC01419-201ENST00000522365 1521 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
USP39Q53GS9 ZNF233-205ENST00000592581 2938 ntTSL 2 BASIC6.32□□□□□ -1.4
USP39Q53GS9 CDK14-206ENST00000436577 4787 ntTSL 2 BASIC6.32□□□□□ -1.4
USP39Q53GS9 AL357568.1-201ENST00000421530 1963 ntTSL 2 BASIC6.32□□□□□ -1.4
USP39Q53GS9 TTC39B-207ENST00000507993 1950 ntAPPRIS ALT2 TSL 2 BASIC6.32□□□□□ -1.4
USP39Q53GS9 DOCK11P1-201ENST00000553480 5932 ntBASIC6.32□□□□□ -1.4
USP39Q53GS9 RPL6-201ENST00000202773 947 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
USP39Q53GS9 RNA5SP477-201ENST00000362639 119 ntBASIC6.32□□□□□ -1.4
USP39Q53GS9 RNU1-134P-201ENST00000362935 165 ntBASIC6.32□□□□□ -1.4
USP39Q53GS9 AC087752.1-201ENST00000391360 558 ntBASIC6.32□□□□□ -1.4
USP39Q53GS9 RPL34-203ENST00000394668 853 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
USP39Q53GS9 AL445238.1-204ENST00000400311 463 ntBASIC6.32□□□□□ -1.4
USP39Q53GS9 AL023284.3-201ENST00000407767 334 ntBASIC6.32□□□□□ -1.4
USP39Q53GS9 RPL22P18-201ENST00000417197 377 ntBASIC6.32□□□□□ -1.4
USP39Q53GS9 NME1P1-201ENST00000420914 382 ntBASIC6.32□□□□□ -1.4
USP39Q53GS9 LINC01762-201ENST00000423907 454 ntTSL 5 BASIC6.32□□□□□ -1.4
USP39Q53GS9 AL356056.1-206ENST00000424615 407 ntTSL 5 BASIC6.32□□□□□ -1.4
USP39Q53GS9 MAGI2-AS3-204ENST00000426835 738 ntTSL 3 BASIC6.32□□□□□ -1.4
USP39Q53GS9 AC060234.3-201ENST00000430438 559 ntTSL 5 BASIC6.32□□□□□ -1.4
USP39Q53GS9 AC020571.1-201ENST00000430904 768 ntTSL 2 BASIC6.32□□□□□ -1.4
USP39Q53GS9 AL583854.1-201ENST00000438818 613 ntTSL 5 BASIC6.32□□□□□ -1.4
USP39Q53GS9 AL513412.1-201ENST00000445708 553 ntTSL 4 BASIC6.32□□□□□ -1.4
USP39Q53GS9 CHODL-AS1-201ENST00000447175 1117 ntTSL 2 BASIC6.32□□□□□ -1.4
USP39Q53GS9 AL031313.1-201ENST00000448435 256 ntBASIC6.32□□□□□ -1.4
USP39Q53GS9 MGAT2P1-201ENST00000449718 797 ntBASIC6.32□□□□□ -1.4
USP39Q53GS9 RPL31P53-201ENST00000457065 348 ntBASIC6.32□□□□□ -1.4
USP39Q53GS9 B4GALT4-AS1-201ENST00000470790 544 ntTSL 5 BASIC6.32□□□□□ -1.4
USP39Q53GS9 AC135999.1-201ENST00000478962 479 ntBASIC6.32□□□□□ -1.4
USP39Q53GS9 NPM1P17-201ENST00000479221 602 ntBASIC6.32□□□□□ -1.4
USP39Q53GS9 BET1P1-201ENST00000482276 359 ntBASIC6.32□□□□□ -1.4
USP39Q53GS9 AC092924.1-201ENST00000496084 487 ntTSL 4 BASIC6.32□□□□□ -1.4
USP39Q53GS9 BMPR1B-204ENST00000502683 567 ntTSL 4 BASIC6.32□□□□□ -1.4
USP39Q53GS9 NPM1P27-201ENST00000502784 830 ntBASIC6.32□□□□□ -1.4
USP39Q53GS9 LINC02360-201ENST00000506195 657 ntTSL 3 BASIC6.32□□□□□ -1.4
USP39Q53GS9 OSMR-AS1-201ENST00000506463 800 ntTSL 3 BASIC6.32□□□□□ -1.4
USP39Q53GS9 SNHG27-202ENST00000507933 491 ntTSL 2 BASIC6.32□□□□□ -1.4
USP39Q53GS9 SSX6-203ENST00000509958 336 ntTSL 3 BASIC6.32□□□□□ -1.4
USP39Q53GS9 AC106800.3-201ENST00000511389 308 ntBASIC6.32□□□□□ -1.4
USP39Q53GS9 SNORA76.2-201ENST00000517095 137 ntBASIC6.32□□□□□ -1.4
USP39Q53GS9 MRPS36P3-201ENST00000519284 130 ntBASIC6.32□□□□□ -1.4
USP39Q53GS9 AP001207.2-201ENST00000519490 539 ntBASIC6.32□□□□□ -1.4
USP39Q53GS9 AP003501.1-201ENST00000524453 744 ntTSL 3 BASIC6.32□□□□□ -1.4
USP39Q53GS9 AP000873.2-204ENST00000530825 375 ntTSL 3 BASIC6.32□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 104.9 ms