Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 LINC01963-201ENST00000562038 3148 ntBASIC6.71□□□□□ -1.34
SMARCA1P28370 GVINP1-201ENST00000526769 8438 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
SMARCA1P28370 CX3CR1-201ENST00000358309 3151 ntTSL 2 BASIC6.71□□□□□ -1.34
SMARCA1P28370 SPATA31D5P-202ENST00000527857 4863 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
SMARCA1P28370 AC079753.1-201ENST00000623243 3868 ntBASIC6.71□□□□□ -1.34
SMARCA1P28370 WDR63-202ENST00000326813 2888 ntAPPRIS ALT2 TSL 2 BASIC6.71□□□□□ -1.34
SMARCA1P28370 MPDZ-219ENST00000546205 6342 ntAPPRIS ALT2 TSL 5 BASIC6.7□□□□□ -1.34
SMARCA1P28370 NEPNP-201ENST00000404786 1371 ntBASIC6.7□□□□□ -1.34
SMARCA1P28370 AC011503.1-201ENST00000596326 1585 ntTSL 2 BASIC6.7□□□□□ -1.34
SMARCA1P28370 MFSD8-239ENST00000641590 2479 ntBASIC6.7□□□□□ -1.34
SMARCA1P28370 TBCK-205ENST00000432496 3362 ntAPPRIS P1 TSL 2 BASIC6.7□□□□□ -1.34
SMARCA1P28370 LINC01152-201ENST00000472655 3578 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
SMARCA1P28370 TTI1-203ENST00000449821 3791 ntAPPRIS P1 TSL 2 BASIC6.7□□□□□ -1.34
SMARCA1P28370 MID1-206ENST00000380787 5973 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
SMARCA1P28370 DAZ2-204ENST00000382431 3637 ntAPPRIS ALT2 TSL 1 (best) BASIC6.7□□□□□ -1.34
SMARCA1P28370 CPED1-203ENST00000423795 2189 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
SMARCA1P28370 OR4K17-201ENST00000315543 1032 ntBASIC6.7□□□□□ -1.34
SMARCA1P28370 WFDC11-202ENST00000356562 642 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
SMARCA1P28370 MIR365B-201ENST00000362317 111 ntBASIC6.7□□□□□ -1.34
SMARCA1P28370 PPCS-201ENST00000372556 984 ntTSL 2 BASIC6.7□□□□□ -1.34
SMARCA1P28370 RNA5SP284-201ENST00000384547 118 ntBASIC6.7□□□□□ -1.34
SMARCA1P28370 OR6C4-201ENST00000394256 1046 ntAPPRIS P1 BASIC6.7□□□□□ -1.34
SMARCA1P28370 AL353692.2-201ENST00000407054 335 ntBASIC6.7□□□□□ -1.34
SMARCA1P28370 TRIM60P17-201ENST00000415181 719 ntBASIC6.7□□□□□ -1.34
SMARCA1P28370 IPPKP1-201ENST00000422501 768 ntBASIC6.7□□□□□ -1.34
SMARCA1P28370 AL121882.1-201ENST00000422893 417 ntBASIC6.7□□□□□ -1.34
SMARCA1P28370 AC073641.1-201ENST00000425192 429 ntTSL 3 BASIC6.7□□□□□ -1.34
SMARCA1P28370 PQLC2L-202ENST00000426338 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC6.7□□□□□ -1.34
SMARCA1P28370 VN1R21P-201ENST00000426703 765 ntBASIC6.7□□□□□ -1.34
SMARCA1P28370 CRIP1P1-201ENST00000427567 185 ntBASIC6.7□□□□□ -1.34
SMARCA1P28370 AC060234.3-201ENST00000430438 559 ntTSL 5 BASIC6.7□□□□□ -1.34
SMARCA1P28370 AC117944.1-201ENST00000430748 641 ntTSL 3 BASIC6.7□□□□□ -1.34
SMARCA1P28370 HTR3E-AS1-201ENST00000431427 515 ntTSL 4 BASIC6.7□□□□□ -1.34
SMARCA1P28370 RPS29P14-201ENST00000431518 171 ntBASIC6.7□□□□□ -1.34
SMARCA1P28370 AL162385.2-201ENST00000437864 285 ntTSL 3 BASIC6.7□□□□□ -1.34
SMARCA1P28370 DNAJC19P5-201ENST00000443295 316 ntBASIC6.7□□□□□ -1.34
SMARCA1P28370 LINC01828-201ENST00000445514 531 ntTSL 4 BASIC6.7□□□□□ -1.34
SMARCA1P28370 LINC01611-203ENST00000454981 504 ntTSL 3 BASIC6.7□□□□□ -1.34
SMARCA1P28370 CMAHP-205ENST00000471416 1118 ntTSL 2 BASIC6.7□□□□□ -1.34
SMARCA1P28370 AC090543.1-201ENST00000492168 485 ntBASIC6.7□□□□□ -1.34
SMARCA1P28370 AC009120.1-201ENST00000493458 473 ntBASIC6.7□□□□□ -1.34
SMARCA1P28370 AC106895.1-202ENST00000502956 777 ntTSL 3 BASIC6.7□□□□□ -1.34
SMARCA1P28370 OR10J4-201ENST00000504970 935 ntAPPRIS P1 BASIC6.7□□□□□ -1.34
SMARCA1P28370 HAUS1P1-201ENST00000505275 832 ntBASIC6.7□□□□□ -1.34
SMARCA1P28370 AC105384.2-201ENST00000508433 640 ntBASIC6.7□□□□□ -1.34
SMARCA1P28370 AC103855.3-201ENST00000528445 606 ntTSL 5 BASIC6.7□□□□□ -1.34
SMARCA1P28370 GPRC5D-AS1-205ENST00000540198 404 ntTSL 5 BASIC6.7□□□□□ -1.34
SMARCA1P28370 FLVCR2-207ENST00000555027 938 ntTSL 3 BASIC6.7□□□□□ -1.34
SMARCA1P28370 FRMD6-AS2-201ENST00000556617 548 ntTSL 4 BASIC6.7□□□□□ -1.34
SMARCA1P28370 AC093510.2-201ENST00000562820 896 ntBASIC6.7□□□□□ -1.34
SMARCA1P28370 DPPA2P4-201ENST00000563717 878 ntBASIC6.7□□□□□ -1.34
SMARCA1P28370 MIR3614-201ENST00000581261 86 ntBASIC6.7□□□□□ -1.34
SMARCA1P28370 MIR4420-201ENST00000583944 77 ntBASIC6.7□□□□□ -1.34
SMARCA1P28370 MIMT1-201ENST00000597105 1050 ntBASIC6.7□□□□□ -1.34
SMARCA1P28370 AC063977.5-201ENST00000601044 974 ntBASIC6.7□□□□□ -1.34
SMARCA1P28370 UBE2E3-208ENST00000602632 446 ntTSL 2 BASIC6.7□□□□□ -1.34
SMARCA1P28370 AL133247.2-201ENST00000603236 482 ntBASIC6.7□□□□□ -1.34
SMARCA1P28370 OR51C1P-201ENST00000608504 942 ntBASIC6.7□□□□□ -1.34
SMARCA1P28370 AF129408.1-201ENST00000608767 431 ntBASIC6.7□□□□□ -1.34
SMARCA1P28370 AC004160.1-201ENST00000625468 929 ntTSL 5 BASIC6.7□□□□□ -1.34
SMARCA1P28370 ATM-229ENST00000639953 587 ntTSL 5 BASIC6.7□□□□□ -1.34
SMARCA1P28370 MBNL2-201ENST00000343600 4596 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
SMARCA1P28370 OR2AG1-202ENST00000641258 6993 ntAPPRIS P1 BASIC6.7□□□□□ -1.34
SMARCA1P28370 DAZ2-203ENST00000382424 3853 ntAPPRIS ALT2 TSL 5 BASIC6.7□□□□□ -1.34
SMARCA1P28370 SMAP1-206ENST00000619054 3150 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
SMARCA1P28370 TAF9-205ENST00000506736 1331 ntAPPRIS P2 TSL 1 (best) BASIC6.7□□□□□ -1.34
SMARCA1P28370 FCGR3B-208ENST00000613418 2251 ntTSL 5 BASIC6.7□□□□□ -1.34
SMARCA1P28370 LINC02401-201ENST00000550185 3059 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
SMARCA1P28370 SETDB2-201ENST00000258672 2138 ntTSL 5 BASIC6.7□□□□□ -1.34
SMARCA1P28370 KIAA1841-205ENST00000453873 4294 ntAPPRIS P1 TSL 5 BASIC6.7□□□□□ -1.34
SMARCA1P28370 MAPKAPK5P1-201ENST00000431810 1376 ntBASIC6.69□□□□□ -1.34
SMARCA1P28370 CD200R1L-204ENST00000488794 1597 ntAPPRIS ALT2 TSL 5 BASIC6.69□□□□□ -1.34
SMARCA1P28370 TMEM161B-211ENST00000512429 1796 ntTSL 2 BASIC6.69□□□□□ -1.34
SMARCA1P28370 RFTN2-201ENST00000295049 5827 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
SMARCA1P28370 OR1A1-203ENST00000641732 3832 ntAPPRIS P1 BASIC6.69□□□□□ -1.34
SMARCA1P28370 CLCN3-201ENST00000347613 3635 ntAPPRIS P4 TSL 1 (best) BASIC6.69□□□□□ -1.34
SMARCA1P28370 AC092111.2-201ENST00000611627 1414 ntBASIC6.69□□□□□ -1.34
SMARCA1P28370 UGT2B11-201ENST00000446444 2088 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
SMARCA1P28370 MAGI2-205ENST00000519748 3316 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
SMARCA1P28370 ZFYVE16-206ENST00000510158 6680 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
SMARCA1P28370 CDKL5-205ENST00000623535 12533 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
SMARCA1P28370 OR10AB1P-202ENST00000641219 1686 ntBASIC6.69□□□□□ -1.34
SMARCA1P28370 RLN1-201ENST00000223862 967 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
SMARCA1P28370 RNU6-609P-201ENST00000365459 107 ntBASIC6.69□□□□□ -1.34
SMARCA1P28370 IGLV3-10-201ENST00000390315 382 ntAPPRIS P1 BASIC6.69□□□□□ -1.34
SMARCA1P28370 HORMAD2-202ENST00000403975 2115 ntAPPRIS P1 TSL 2 BASIC6.69□□□□□ -1.34
SMARCA1P28370 GPC5-AS2-201ENST00000417589 401 ntTSL 3 BASIC6.69□□□□□ -1.34
SMARCA1P28370 AL513188.1-201ENST00000421167 614 ntTSL 3 BASIC6.69□□□□□ -1.34
SMARCA1P28370 RNF19BPX-201ENST00000426224 625 ntBASIC6.69□□□□□ -1.34
SMARCA1P28370 MTCO1P45-201ENST00000431457 267 ntBASIC6.69□□□□□ -1.34
SMARCA1P28370 LINC01878-201ENST00000434559 769 ntTSL 3 BASIC6.69□□□□□ -1.34
SMARCA1P28370 AC012368.1-201ENST00000438115 552 ntTSL 3 BASIC6.69□□□□□ -1.34
SMARCA1P28370 TMEM244-202ENST00000438392 565 ntAPPRIS P1 TSL 5 BASIC6.69□□□□□ -1.34
SMARCA1P28370 LINC00412-201ENST00000444744 420 ntTSL 2 BASIC6.69□□□□□ -1.34
SMARCA1P28370 AC016724.1-201ENST00000453215 421 ntBASIC6.69□□□□□ -1.34
SMARCA1P28370 MID1-209ENST00000453318 6393 ntAPPRIS P1 TSL 5 BASIC6.69□□□□□ -1.34
SMARCA1P28370 RPS27AP2-201ENST00000457576 465 ntBASIC6.69□□□□□ -1.34
SMARCA1P28370 RPS3AP15-201ENST00000483874 781 ntBASIC6.69□□□□□ -1.34
SMARCA1P28370 CR383656.1-201ENST00000484916 377 ntBASIC6.69□□□□□ -1.34
SMARCA1P28370 PDCL3P4-201ENST00000489621 720 ntBASIC6.69□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 86.1 ms