Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Nsmf-203ENSMUST00000100334 2957 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Msh4Q99MT2 Cdipt-201ENSMUST00000032920 1974 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Msh4Q99MT2 Cpsf4-207ENSMUST00000162244 1387 ntAPPRIS P4 TSL 1 (best) BASIC16.44■□□□□ 0.22
Msh4Q99MT2 Ripor2-205ENSMUST00000110384 5608 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Msh4Q99MT2 Dcxr-202ENSMUST00000106148 830 ntTSL 2 BASIC16.44■□□□□ 0.22
Msh4Q99MT2 Tnnt2-202ENSMUST00000112085 1076 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
Msh4Q99MT2 Tnnt2-203ENSMUST00000112086 1094 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
Msh4Q99MT2 Tnnt2-204ENSMUST00000112087 1112 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
Msh4Q99MT2 Bad-202ENSMUST00000113423 990 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Msh4Q99MT2 Rpl18-ps2-201ENSMUST00000118863 567 ntBASIC16.44■□□□□ 0.22
Msh4Q99MT2 Gm11539-201ENSMUST00000119837 557 ntBASIC16.44■□□□□ 0.22
Msh4Q99MT2 Gm13436-201ENSMUST00000120418 567 ntBASIC16.44■□□□□ 0.22
Msh4Q99MT2 Gm13836-201ENSMUST00000121159 501 ntBASIC16.44■□□□□ 0.22
Msh4Q99MT2 D330023K18Rik-201ENSMUST00000133550 920 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Msh4Q99MT2 Tnnt2-206ENSMUST00000178854 1076 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
Msh4Q99MT2 Tnnt2-211ENSMUST00000189355 1112 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
Msh4Q99MT2 Tnnt2-212ENSMUST00000189732 1123 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
Msh4Q99MT2 Rps2-ps2-201ENSMUST00000194305 881 ntBASIC16.44■□□□□ 0.22
Msh4Q99MT2 AC122465.1-201ENSMUST00000220813 1209 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Msh4Q99MT2 Mrps33-201ENSMUST00000031978 1107 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Msh4Q99MT2 Bax-201ENSMUST00000033093 867 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Msh4Q99MT2 Gm21974-201ENSMUST00000126662 2037 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
Msh4Q99MT2 Mmd-201ENSMUST00000004050 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Msh4Q99MT2 Shroom4-202ENSMUST00000103005 4839 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Msh4Q99MT2 Tmem233-201ENSMUST00000111997 2477 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
Msh4Q99MT2 Aspscr1-204ENSMUST00000106159 1615 ntTSL 5 BASIC16.44■□□□□ 0.22
Msh4Q99MT2 Wdr26-207ENSMUST00000162819 6619 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Msh4Q99MT2 Nrbp1-207ENSMUST00000202576 2221 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Msh4Q99MT2 Nrbp1-201ENSMUST00000031034 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Msh4Q99MT2 Sept4-205ENSMUST00000107962 1678 ntAPPRIS ALT1 TSL 5 BASIC16.43■□□□□ 0.22
Msh4Q99MT2 4921536K21Rik-201ENSMUST00000020712 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Msh4Q99MT2 Tbx21-201ENSMUST00000001484 2488 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Msh4Q99MT2 Aig1-205ENSMUST00000162610 1554 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Msh4Q99MT2 Synpo-205ENSMUST00000130044 4970 ntAPPRIS P3 TSL 2 BASIC16.43■□□□□ 0.22
Msh4Q99MT2 Irgc1-204ENSMUST00000205776 1835 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Msh4Q99MT2 Ube2d3-202ENSMUST00000166033 2504 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Msh4Q99MT2 Ccdc105-201ENSMUST00000105383 1714 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Msh4Q99MT2 Dnajb3-201ENSMUST00000119972 1051 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
Msh4Q99MT2 Tsfm-202ENSMUST00000120547 1271 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Msh4Q99MT2 Khdc3-204ENSMUST00000173734 1228 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Msh4Q99MT2 Nudt8-202ENSMUST00000025802 787 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Msh4Q99MT2 Vps37d-202ENSMUST00000076203 1286 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Msh4Q99MT2 Klc3-202ENSMUST00000108457 1632 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
Msh4Q99MT2 Gm45774-201ENSMUST00000211992 2665 ntBASIC16.43■□□□□ 0.22
Msh4Q99MT2 Msi2-201ENSMUST00000092794 1855 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Msh4Q99MT2 Fam120c-201ENSMUST00000073364 5463 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Msh4Q99MT2 Mpst-203ENSMUST00000169133 1309 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
Msh4Q99MT2 Trappc3-201ENSMUST00000030660 1336 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Msh4Q99MT2 Plekhh3-206ENSMUST00000164474 3010 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Msh4Q99MT2 Ell2-201ENSMUST00000001583 4382 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Msh4Q99MT2 Tmem163-203ENSMUST00000160616 2657 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
Msh4Q99MT2 Aida-206ENSMUST00000193625 1810 ntTSL 3 BASIC16.42■□□□□ 0.22
Msh4Q99MT2 Tle3-211ENSMUST00000161689 2836 ntTSL 2 BASIC16.42■□□□□ 0.22
Msh4Q99MT2 Rhobtb1-202ENSMUST00000067908 4422 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Msh4Q99MT2 Aurkb-201ENSMUST00000021277 1950 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Msh4Q99MT2 Acsl3-205ENSMUST00000142704 2976 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Msh4Q99MT2 Cadm1-204ENSMUST00000114548 4482 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Msh4Q99MT2 Capzb-202ENSMUST00000042675 1604 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Msh4Q99MT2 Cnot9-201ENSMUST00000087215 3268 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Msh4Q99MT2 Sapcd2-202ENSMUST00000100323 1761 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
Msh4Q99MT2 Sec61a1-201ENSMUST00000032168 3172 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Msh4Q99MT2 Lsm1-201ENSMUST00000038421 2663 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Msh4Q99MT2 Gm6433-201ENSMUST00000118634 875 ntBASIC16.42■□□□□ 0.22
Msh4Q99MT2 Gm13559-201ENSMUST00000120476 863 ntBASIC16.42■□□□□ 0.22
Msh4Q99MT2 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
Msh4Q99MT2 Gm24841-201ENSMUST00000158676 357 ntBASIC16.42■□□□□ 0.22
Msh4Q99MT2 Gm11273-201ENSMUST00000044043 390 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
Msh4Q99MT2 Pfdn4-201ENSMUST00000063682 935 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Msh4Q99MT2 Marveld1-201ENSMUST00000061111 3066 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Msh4Q99MT2 Tnks-201ENSMUST00000033929 9163 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Msh4Q99MT2 Zar1-201ENSMUST00000073528 1429 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Msh4Q99MT2 Antxr2-202ENSMUST00000199088 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Msh4Q99MT2 Lrp6-201ENSMUST00000032322 9368 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Msh4Q99MT2 Gm10649-203ENSMUST00000148066 1812 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Msh4Q99MT2 Brpf1-202ENSMUST00000113119 4826 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Msh4Q99MT2 Eral1-201ENSMUST00000021183 2014 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Msh4Q99MT2 Tra2a-204ENSMUST00000204189 1777 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Msh4Q99MT2 Kif5b-201ENSMUST00000025083 6032 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Msh4Q99MT2 Gaa-202ENSMUST00000106258 1369 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Msh4Q99MT2 Fndc11-201ENSMUST00000050026 1387 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Msh4Q99MT2 Nfs1-201ENSMUST00000029147 2051 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Msh4Q99MT2 Cct8-201ENSMUST00000026704 2394 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Msh4Q99MT2 Rara-202ENSMUST00000107473 3238 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Msh4Q99MT2 Col17a1-202ENSMUST00000086923 5477 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
Msh4Q99MT2 Rps5-202ENSMUST00000108539 794 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
Msh4Q99MT2 Pdxdc1-203ENSMUST00000115803 1268 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
Msh4Q99MT2 Comtd1-204ENSMUST00000177527 714 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
Msh4Q99MT2 Gm45618-201ENSMUST00000209890 660 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
Msh4Q99MT2 Atp23-201ENSMUST00000026504 903 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Msh4Q99MT2 Limd2-202ENSMUST00000064545 798 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
Msh4Q99MT2 Gm9987-201ENSMUST00000069768 567 ntBASIC16.41■□□□□ 0.22
Msh4Q99MT2 Cebpg-201ENSMUST00000070191 914 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
Msh4Q99MT2 E030042O20Rik-201ENSMUST00000135244 1427 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
Msh4Q99MT2 Gm43272-201ENSMUST00000200599 1584 ntBASIC16.41■□□□□ 0.22
Msh4Q99MT2 Sfrp2-201ENSMUST00000029625 2003 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Msh4Q99MT2 Prss56-201ENSMUST00000044533 2180 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Msh4Q99MT2 Synpo-201ENSMUST00000097566 5060 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
Msh4Q99MT2 Ctcf-201ENSMUST00000005841 3782 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Msh4Q99MT2 Nudt4-201ENSMUST00000020217 3210 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Msh4Q99MT2 Faap20-201ENSMUST00000097747 1479 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
Retrieved 100 of 76,532 protein–RNA pairs in 409.3 ms