Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Gpx7-201ENSMUST00000030332 1289 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Rnf40Q3U319 Gpr3-201ENSMUST00000052090 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Rnf40Q3U319 Rassf3-201ENSMUST00000026902 3522 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Rnf40Q3U319 Brap-201ENSMUST00000031414 3744 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Rnf40Q3U319 Gm26891-201ENSMUST00000181644 2599 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
Rnf40Q3U319 Cyp46a1-201ENSMUST00000021684 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Rnf40Q3U319 Zfp648-201ENSMUST00000086195 1892 ntAPPRIS P1 TSL 3 BASIC17.54■□□□□ 0.4
Rnf40Q3U319 Galnt18-202ENSMUST00000106663 2530 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Rnf40Q3U319 A4galt-201ENSMUST00000049530 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
Rnf40Q3U319 Rabep1-201ENSMUST00000076270 5408 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
Rnf40Q3U319 Car11-201ENSMUST00000003360 1585 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Rnf40Q3U319 Sufu-202ENSMUST00000111867 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Rnf40Q3U319 Tuba8-201ENSMUST00000032233 2263 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Rnf40Q3U319 Coro1a-201ENSMUST00000032949 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Rnf40Q3U319 Rbp4-202ENSMUST00000112335 930 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Rnf40Q3U319 Tmem9-202ENSMUST00000117950 847 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
Rnf40Q3U319 Zfp335os-201ENSMUST00000129364 1127 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Rnf40Q3U319 Rtn4-210ENSMUST00000170731 1272 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Rnf40Q3U319 Mir7075-201ENSMUST00000184187 82 ntBASIC17.53■□□□□ 0.4
Rnf40Q3U319 1700064M15Rik-201ENSMUST00000185726 645 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Rnf40Q3U319 Gm29019-202ENSMUST00000188623 564 ntTSL 2 BASIC17.53■□□□□ 0.4
Rnf40Q3U319 Hoxb7-201ENSMUST00000049352 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Rnf40Q3U319 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC17.53■□□□□ 0.4
Rnf40Q3U319 Gps1-207ENSMUST00000172809 2000 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Rnf40Q3U319 Rft1-201ENSMUST00000064230 2387 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Rnf40Q3U319 Vangl2-203ENSMUST00000111264 2349 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Rnf40Q3U319 Gm16759-204ENSMUST00000191455 4272 ntTSL 5 BASIC17.52■□□□□ 0.4
Rnf40Q3U319 Fyn-202ENSMUST00000099967 3528 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Rnf40Q3U319 Sesn1-202ENSMUST00000099931 3809 ntAPPRIS ALT1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Rnf40Q3U319 Mapk8ip1-201ENSMUST00000050312 2930 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
Rnf40Q3U319 Gabpb1-203ENSMUST00000103226 1338 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Rnf40Q3U319 Wnt16-201ENSMUST00000031681 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Rnf40Q3U319 Arhgef11-201ENSMUST00000039476 6776 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Rnf40Q3U319 Enoph1-202ENSMUST00000169390 1833 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Rnf40Q3U319 Ssbp2-202ENSMUST00000042122 1633 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Rnf40Q3U319 Spr-203ENSMUST00000174769 1029 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Rnf40Q3U319 Msantd1-203ENSMUST00000202205 744 ntTSL 2 BASIC17.52■□□□□ 0.4
Rnf40Q3U319 Ndufa5-201ENSMUST00000023851 875 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Rnf40Q3U319 2810025M15Rik-201ENSMUST00000061537 1194 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Rnf40Q3U319 Tmem147-201ENSMUST00000006478 870 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Rnf40Q3U319 Gm25007-201ENSMUST00000083808 133 ntBASIC17.52■□□□□ 0.4
Rnf40Q3U319 Zfx-201ENSMUST00000088102 7002 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
Rnf40Q3U319 Samd4-204ENSMUST00000125688 1773 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
Rnf40Q3U319 Clvs2-201ENSMUST00000019920 2717 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Rnf40Q3U319 Fam78b-206ENSMUST00000190081 4666 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Rnf40Q3U319 Wnk1-202ENSMUST00000060043 10575 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.39
Rnf40Q3U319 Atxn7l2-203ENSMUST00000117784 2387 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.39
Rnf40Q3U319 Insig1-201ENSMUST00000059155 2697 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
Rnf40Q3U319 Sec14l1-203ENSMUST00000103026 2589 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
Rnf40Q3U319 Nectin2-201ENSMUST00000075447 2735 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
Rnf40Q3U319 AC108858.1-201ENSMUST00000228461 1498 ntBASIC17.51■□□□□ 0.39
Rnf40Q3U319 Hpn-209ENSMUST00000168884 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Rnf40Q3U319 Clk4-201ENSMUST00000093132 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Rnf40Q3U319 Papd4-201ENSMUST00000048702 2990 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Rnf40Q3U319 Ikzf5-203ENSMUST00000128432 714 ntTSL 3 BASIC17.51■□□□□ 0.39
Rnf40Q3U319 Gm34933-201ENSMUST00000203245 1067 ntTSL 5 BASIC17.51■□□□□ 0.39
Rnf40Q3U319 Fosl1-201ENSMUST00000025850 1707 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Rnf40Q3U319 Bricd5-201ENSMUST00000054946 997 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Rnf40Q3U319 Galnt13-204ENSMUST00000112636 7530 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Rnf40Q3U319 Narfl-201ENSMUST00000002350 2555 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Rnf40Q3U319 Nap1l4-201ENSMUST00000072727 2285 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Rnf40Q3U319 Espn-209ENSMUST00000105655 1350 ntTSL 5 BASIC17.51■□□□□ 0.39
Rnf40Q3U319 Espn-211ENSMUST00000105657 1375 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
Rnf40Q3U319 Gabarap-201ENSMUST00000018711 1351 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Rnf40Q3U319 Snrpa-201ENSMUST00000080356 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Rnf40Q3U319 Rsrc1-205ENSMUST00000161726 3213 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
Rnf40Q3U319 Shcbp1l-201ENSMUST00000042373 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Rnf40Q3U319 Zfp281-201ENSMUST00000047734 4933 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
Rnf40Q3U319 Loxl4-205ENSMUST00000171432 2274 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
Rnf40Q3U319 Fgf2-208ENSMUST00000200585 5973 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Rnf40Q3U319 Gnb1-202ENSMUST00000105616 3088 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Rnf40Q3U319 Svip-201ENSMUST00000098414 3053 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Rnf40Q3U319 Erlec1-201ENSMUST00000073192 2532 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Rnf40Q3U319 Ssfa2-201ENSMUST00000111784 4999 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
Rnf40Q3U319 Dcdc2c-206ENSMUST00000221349 2209 ntAPPRIS P1 TSL 5 BASIC17.5■□□□□ 0.39
Rnf40Q3U319 Gm10418-201ENSMUST00000100943 576 ntBASIC17.5■□□□□ 0.39
Rnf40Q3U319 Aktip-201ENSMUST00000109609 1171 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Rnf40Q3U319 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
Rnf40Q3U319 Zfp428-203ENSMUST00000177205 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Rnf40Q3U319 AC114678.1-201ENSMUST00000219640 622 ntTSL 3 BASIC17.5■□□□□ 0.39
Rnf40Q3U319 Hist1h2bh-201ENSMUST00000224359 1679 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
Rnf40Q3U319 Dpep3-201ENSMUST00000034371 1698 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Rnf40Q3U319 Cyp2ab1-201ENSMUST00000023513 2720 ntTSL 5 BASIC17.5■□□□□ 0.39
Rnf40Q3U319 Cables1-202ENSMUST00000171109 3396 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Rnf40Q3U319 Ppp3cb-201ENSMUST00000022355 3074 ntAPPRIS ALT1 TSL 5 BASIC17.5■□□□□ 0.39
Rnf40Q3U319 Ngb-201ENSMUST00000021420 1616 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
Rnf40Q3U319 2810425M01Rik-201ENSMUST00000180790 1850 ntTSL 5 BASIC17.5■□□□□ 0.39
Rnf40Q3U319 Trim41-201ENSMUST00000047145 3432 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Rnf40Q3U319 Pacs1-201ENSMUST00000025786 4339 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Rnf40Q3U319 Adam15-202ENSMUST00000074582 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
Rnf40Q3U319 Kcnq2-204ENSMUST00000103047 2899 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
Rnf40Q3U319 Atp5a1-201ENSMUST00000026495 2471 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Rnf40Q3U319 Rbfox3-205ENSMUST00000117731 3084 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Rnf40Q3U319 Rrp8-201ENSMUST00000033179 3053 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
Rnf40Q3U319 Gclc-201ENSMUST00000034905 3423 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Rnf40Q3U319 Coq8b-201ENSMUST00000003860 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Rnf40Q3U319 Tox2-205ENSMUST00000165937 1675 ntAPPRIS P2 TSL 5 BASIC17.49■□□□□ 0.39
Rnf40Q3U319 Stx7-201ENSMUST00000020174 2502 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Rnf40Q3U319 0610010K14Rik-209ENSMUST00000108579 667 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Rnf40Q3U319 Kbtbd2-202ENSMUST00000114323 3816 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 21.4 ms