Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
APOEP02649 AC116351.2-201ENST00000606540 1585 ntBASIC20.55■□□□□ 0.88
APOEP02649 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
APOEP02649 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
APOEP02649 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
APOEP02649 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC20.55■□□□□ 0.88
APOEP02649 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
APOEP02649 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC20.55■□□□□ 0.88
APOEP02649 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC20.55■□□□□ 0.88
APOEP02649 RPPH1-201ENST00000516869 333 ntBASIC20.55■□□□□ 0.88
APOEP02649 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC20.55■□□□□ 0.88
APOEP02649 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC20.55■□□□□ 0.88
APOEP02649 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC20.55■□□□□ 0.88
APOEP02649 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
APOEP02649 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
APOEP02649 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
APOEP02649 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
APOEP02649 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
APOEP02649 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
APOEP02649 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
APOEP02649 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
APOEP02649 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
APOEP02649 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
APOEP02649 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
APOEP02649 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
APOEP02649 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC20.54■□□□□ 0.88
APOEP02649 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC20.54■□□□□ 0.88
APOEP02649 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC20.54■□□□□ 0.88
APOEP02649 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC20.54■□□□□ 0.88
APOEP02649 GOLGA2P11-201ENST00000562660 1621 ntBASIC20.54■□□□□ 0.88
APOEP02649 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC20.54■□□□□ 0.88
APOEP02649 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
APOEP02649 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
APOEP02649 TREX2-204ENST00000370212 861 ntTSL 5 BASIC20.54■□□□□ 0.88
APOEP02649 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
APOEP02649 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
APOEP02649 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC20.54■□□□□ 0.88
APOEP02649 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC20.54■□□□□ 0.88
APOEP02649 LY6E-205ENST00000519611 635 ntTSL 3 BASIC20.54■□□□□ 0.88
APOEP02649 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC20.54■□□□□ 0.88
APOEP02649 AL359736.2-201ENST00000621992 437 ntBASIC20.54■□□□□ 0.88
APOEP02649 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
APOEP02649 AC007952.6-201ENST00000573168 2673 ntBASIC20.54■□□□□ 0.88
APOEP02649 AC003957.1-201ENST00000625108 2673 ntBASIC20.54■□□□□ 0.88
APOEP02649 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
APOEP02649 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
APOEP02649 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
APOEP02649 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
APOEP02649 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC20.54■□□□□ 0.88
APOEP02649 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
APOEP02649 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC20.53■□□□□ 0.88
APOEP02649 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC20.53■□□□□ 0.88
APOEP02649 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
APOEP02649 HYLS1-203ENST00000526028 1803 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
APOEP02649 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
APOEP02649 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
APOEP02649 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC20.53■□□□□ 0.88
APOEP02649 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
APOEP02649 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC20.53■□□□□ 0.88
APOEP02649 ISG20-202ENST00000379224 540 ntTSL 3 BASIC20.53■□□□□ 0.88
APOEP02649 KRASP1-201ENST00000407852 552 ntBASIC20.53■□□□□ 0.88
APOEP02649 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
APOEP02649 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC20.53■□□□□ 0.88
APOEP02649 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC20.53■□□□□ 0.88
APOEP02649 AC018553.1-201ENST00000616682 1458 ntBASIC20.53■□□□□ 0.88
APOEP02649 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
APOEP02649 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
APOEP02649 MOK-225ENST00000522867 1883 ntTSL 5 BASIC20.53■□□□□ 0.88
APOEP02649 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
APOEP02649 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
APOEP02649 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
APOEP02649 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
APOEP02649 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
APOEP02649 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC20.53■□□□□ 0.88
APOEP02649 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC20.53■□□□□ 0.88
APOEP02649 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
APOEP02649 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC20.52■□□□□ 0.88
APOEP02649 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
APOEP02649 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
APOEP02649 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
APOEP02649 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC20.52■□□□□ 0.88
APOEP02649 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC20.52■□□□□ 0.88
APOEP02649 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC20.52■□□□□ 0.88
APOEP02649 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC20.52■□□□□ 0.88
APOEP02649 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC20.52■□□□□ 0.88
APOEP02649 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
APOEP02649 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC20.52■□□□□ 0.88
APOEP02649 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC20.52■□□□□ 0.88
APOEP02649 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
APOEP02649 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC20.52■□□□□ 0.88
APOEP02649 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
APOEP02649 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
APOEP02649 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
APOEP02649 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC20.52■□□□□ 0.87
APOEP02649 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC20.52■□□□□ 0.87
APOEP02649 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.87
APOEP02649 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
APOEP02649 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC20.51■□□□□ 0.87
APOEP02649 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
APOEP02649 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms