Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AC090844.2-201ENST00000578802 436 ntTSL 4 BASIC4.98□□□□□ -1.61
NKX3-1Q99801 AC005726.4-201ENST00000582858 458 ntBASIC4.98□□□□□ -1.61
NKX3-1Q99801 ZNF227-204ENST00000586228 569 ntTSL 2 BASIC4.98□□□□□ -1.61
NKX3-1Q99801 TTN-AS1-219ENST00000586707 834 ntTSL 5 BASIC4.98□□□□□ -1.61
NKX3-1Q99801 AC011451.1-201ENST00000591336 405 ntTSL 3 BASIC4.98□□□□□ -1.61
NKX3-1Q99801 AC010320.2-201ENST00000593857 551 ntTSL 4 BASIC4.98□□□□□ -1.61
NKX3-1Q99801 AC011473.2-201ENST00000596286 240 ntTSL 3 BASIC4.98□□□□□ -1.61
NKX3-1Q99801 HIRAP1-201ENST00000605318 787 ntBASIC4.98□□□□□ -1.61
NKX3-1Q99801 AC004801.6-201ENST00000616571 978 ntBASIC4.98□□□□□ -1.61
NKX3-1Q99801 CCL4L2-217ENST00000620250 667 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
NKX3-1Q99801 AL035661.1-201ENST00000620459 1144 ntBASIC4.98□□□□□ -1.61
NKX3-1Q99801 AL136228.1-201ENST00000622221 319 ntBASIC4.98□□□□□ -1.61
NKX3-1Q99801 LINC00032-203ENST00000640247 1374 ntTSL 5 BASIC4.98□□□□□ -1.61
NKX3-1Q99801 GYPA-212ENST00000616983 2538 ntAPPRIS ALT2 TSL 5 BASIC4.98□□□□□ -1.61
NKX3-1Q99801 VSNL1-203ENST00000406397 2725 ntAPPRIS P1 TSL 5 BASIC4.98□□□□□ -1.61
NKX3-1Q99801 MYBPC1-201ENST00000361466 3899 ntAPPRIS P4 TSL 1 (best) BASIC4.98□□□□□ -1.61
NKX3-1Q99801 AC125336.1-201ENST00000508893 2827 ntBASIC4.98□□□□□ -1.61
NKX3-1Q99801 GNL2P1-201ENST00000451274 2190 ntBASIC4.98□□□□□ -1.61
NKX3-1Q99801 ERCC6L-201ENST00000334463 4243 ntAPPRIS P2 TSL 1 (best) BASIC4.98□□□□□ -1.61
NKX3-1Q99801 AC025428.2-201ENST00000435367 2672 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
NKX3-1Q99801 F9-201ENST00000218099 2780 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
NKX3-1Q99801 PDE5A-203ENST00000394439 6770 ntAPPRIS ALT2 TSL 5 BASIC4.98□□□□□ -1.61
NKX3-1Q99801 HUWE1-214ENST00000612484 14311 ntTSL 5 BASIC4.97□□□□□ -1.61
NKX3-1Q99801 HSPD1P9-201ENST00000420325 1636 ntBASIC4.97□□□□□ -1.61
NKX3-1Q99801 CASC15-207ENST00000607048 1634 ntTSL 2 BASIC4.97□□□□□ -1.61
NKX3-1Q99801 ALB-220ENST00000621628 1606 ntTSL 5 BASIC4.97□□□□□ -1.61
NKX3-1Q99801 PSG9-202ENST00000270077 1705 ntAPPRIS P2 TSL 1 (best) BASIC4.97□□□□□ -1.61
NKX3-1Q99801 LINC01538-201ENST00000588074 2408 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
NKX3-1Q99801 MYBPC1-221ENST00000551300 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC4.97□□□□□ -1.61
NKX3-1Q99801 PLCXD3-201ENST00000328457 7538 ntAPPRIS P1 TSL 5 BASIC4.97□□□□□ -1.61
NKX3-1Q99801 CEP97-201ENST00000341893 8361 ntAPPRIS P3 TSL 1 (best) BASIC4.97□□□□□ -1.61
NKX3-1Q99801 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
NKX3-1Q99801 SIAH1-202ENST00000380006 3352 ntAPPRIS P3 BASIC4.97□□□□□ -1.61
NKX3-1Q99801 RMST-209ENST00000639542 3269 ntTSL 5 BASIC4.97□□□□□ -1.61
NKX3-1Q99801 AL355488.2-201ENST00000609909 2850 ntBASIC4.97□□□□□ -1.61
NKX3-1Q99801 PHTF2-207ENST00000424760 1977 ntTSL 2 BASIC4.97□□□□□ -1.61
NKX3-1Q99801 AC005261.6-201ENST00000623072 1387 ntBASIC4.97□□□□□ -1.61
NKX3-1Q99801 A1CF-207ENST00000395495 9400 ntTSL 5 BASIC4.97□□□□□ -1.61
NKX3-1Q99801 SSX3-201ENST00000298396 1232 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
NKX3-1Q99801 RNU6-697P-201ENST00000363348 107 ntBASIC4.97□□□□□ -1.61
NKX3-1Q99801 OR2A25-201ENST00000408898 1014 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
NKX3-1Q99801 GAS5-202ENST00000414075 413 ntTSL 2 BASIC4.97□□□□□ -1.61
NKX3-1Q99801 AC068286.1-201ENST00000416173 467 ntTSL 4 BASIC4.97□□□□□ -1.61
NKX3-1Q99801 AL162430.2-201ENST00000422306 435 ntTSL 3 BASIC4.97□□□□□ -1.61
NKX3-1Q99801 AL513128.1-201ENST00000422675 469 ntTSL 5 BASIC4.97□□□□□ -1.61
NKX3-1Q99801 SETP10-201ENST00000424368 814 ntBASIC4.97□□□□□ -1.61
NKX3-1Q99801 AC062021.1-201ENST00000429008 557 ntTSL 4 BASIC4.97□□□□□ -1.61
NKX3-1Q99801 BX276092.6-201ENST00000430476 250 ntBASIC4.97□□□□□ -1.61
NKX3-1Q99801 AC005008.2-201ENST00000431501 715 ntTSL 3 BASIC4.97□□□□□ -1.61
NKX3-1Q99801 MAJIN-202ENST00000432175 838 ntAPPRIS P3 TSL 1 (best) BASIC4.97□□□□□ -1.61
NKX3-1Q99801 MTND4P15-201ENST00000437913 1033 ntBASIC4.97□□□□□ -1.61
NKX3-1Q99801 BMS1P10-201ENST00000443754 1120 ntBASIC4.97□□□□□ -1.61
NKX3-1Q99801 LINC01359-203ENST00000444349 381 ntTSL 5 BASIC4.97□□□□□ -1.61
NKX3-1Q99801 AL358876.1-201ENST00000453364 1075 ntBASIC4.97□□□□□ -1.61
NKX3-1Q99801 BX276092.8-201ENST00000455722 250 ntBASIC4.97□□□□□ -1.61
NKX3-1Q99801 AC094085.1-201ENST00000468914 584 ntBASIC4.97□□□□□ -1.61
NKX3-1Q99801 AC105384.2-201ENST00000508433 640 ntBASIC4.97□□□□□ -1.61
NKX3-1Q99801 AC011405.1-204ENST00000512875 731 ntTSL 5 BASIC4.97□□□□□ -1.61
NKX3-1Q99801 ZCCHC10-209ENST00000513541 794 ntAPPRIS ALT2 TSL 2 BASIC4.97□□□□□ -1.61
NKX3-1Q99801 HAND2-AS1-233ENST00000515345 797 ntTSL 3 BASIC4.97□□□□□ -1.61
NKX3-1Q99801 AC124069.1-201ENST00000517454 735 ntTSL 3 BASIC4.97□□□□□ -1.61
NKX3-1Q99801 AC090572.3-201ENST00000519041 804 ntTSL 3 BASIC4.97□□□□□ -1.61
NKX3-1Q99801 AC090993.1-201ENST00000522460 582 ntTSL 3 BASIC4.97□□□□□ -1.61
NKX3-1Q99801 AP003501.1-201ENST00000524453 744 ntTSL 3 BASIC4.97□□□□□ -1.61
NKX3-1Q99801 AC107884.2-201ENST00000530963 550 ntTSL 4 BASIC4.97□□□□□ -1.61
NKX3-1Q99801 AP001893.1-201ENST00000532866 362 ntTSL 5 BASIC4.97□□□□□ -1.61
NKX3-1Q99801 LINC00871-202ENST00000556071 554 ntTSL 3 BASIC4.97□□□□□ -1.61
NKX3-1Q99801 AC087286.2-201ENST00000558980 660 ntTSL 3 BASIC4.97□□□□□ -1.61
NKX3-1Q99801 PINLYP-205ENST00000569031 557 ntTSL 2 BASIC4.97□□□□□ -1.61
NKX3-1Q99801 TMF1P1-201ENST00000576058 373 ntBASIC4.97□□□□□ -1.61
NKX3-1Q99801 TRIM37-212ENST00000584889 353 ntTSL 2 BASIC4.97□□□□□ -1.61
NKX3-1Q99801 AC005856.1-201ENST00000585921 286 ntTSL 3 BASIC4.97□□□□□ -1.61
NKX3-1Q99801 AL589935.1-223ENST00000587015 808 ntTSL 5 BASIC4.97□□□□□ -1.61
NKX3-1Q99801 AC067773.1-201ENST00000603284 1094 ntBASIC4.97□□□□□ -1.61
NKX3-1Q99801 LINC02343-201ENST00000605909 573 ntTSL 4 BASIC4.97□□□□□ -1.61
NKX3-1Q99801 AC015982.1-201ENST00000608113 465 ntBASIC4.97□□□□□ -1.61
NKX3-1Q99801 MALAT1-214ENST00000618925 424 ntTSL 5 BASIC4.97□□□□□ -1.61
NKX3-1Q99801 AC119674.1-220ENST00000641502 1048 ntBASIC4.97□□□□□ -1.61
NKX3-1Q99801 FKBP7-204ENST00000424785 2834 ntAPPRIS P3 TSL 1 (best) BASIC4.97□□□□□ -1.61
NKX3-1Q99801 EXO1-201ENST00000348581 3192 ntAPPRIS P3 TSL 1 (best) BASIC4.97□□□□□ -1.61
NKX3-1Q99801 CTAGE5-217ENST00000557038 2869 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
NKX3-1Q99801 SEM1-202ENST00000356686 2667 ntTSL 5 BASIC4.97□□□□□ -1.61
NKX3-1Q99801 PDE4D-202ENST00000317118 2599 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
NKX3-1Q99801 AGO3-203ENST00000373191 19687 ntAPPRIS P1 TSL 2 BASIC4.97□□□□□ -1.61
NKX3-1Q99801 OPRM1-206ENST00000419506 1402 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
NKX3-1Q99801 ZNF678-201ENST00000343776 8556 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.61
NKX3-1Q99801 SLITRK4-202ENST00000356928 3074 ntAPPRIS P1 TSL 2 BASIC4.96□□□□□ -1.61
NKX3-1Q99801 GTF2IRD2P1-202ENST00000618962 3055 ntTSL 1 (best) BASIC4.96□□□□□ -1.61
NKX3-1Q99801 CDH18-210ENST00000511273 2318 ntTSL 5 BASIC4.96□□□□□ -1.61
NKX3-1Q99801 TRIQK-223ENST00000537541 3510 ntAPPRIS P1 TSL 3 BASIC4.96□□□□□ -1.62
NKX3-1Q99801 AC012254.3-201ENST00000591183 2117 ntBASIC4.96□□□□□ -1.62
NKX3-1Q99801 Z83820.1-201ENST00000456978 1499 ntBASIC4.96□□□□□ -1.62
NKX3-1Q99801 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
NKX3-1Q99801 EEF1A1P33-201ENST00000554413 1362 ntBASIC4.96□□□□□ -1.62
NKX3-1Q99801 FAS-203ENST00000355279 983 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
NKX3-1Q99801 RNU6-883P-201ENST00000384597 107 ntBASIC4.96□□□□□ -1.62
NKX3-1Q99801 SAMD13-206ENST00000394834 785 ntAPPRIS P1 TSL 2 BASIC4.96□□□□□ -1.62
NKX3-1Q99801 CDKN3-203ENST00000395577 637 ntTSL 5 BASIC4.96□□□□□ -1.62
NKX3-1Q99801 HSD17B7P1-201ENST00000412419 1017 ntBASIC4.96□□□□□ -1.62
NKX3-1Q99801 AL109610.1-201ENST00000414598 431 ntTSL 3 BASIC4.96□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 86 ms