Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 FAM197Y6-202ENST00000442145 2340 ntTSL 2 BASIC7.15□□□□□ -1.26
HOXC9P31274 IKZF3-202ENST00000346243 1296 ntTSL 5 BASIC7.15□□□□□ -1.26
HOXC9P31274 HSPB11-202ENST00000371376 765 ntTSL 3 BASIC7.15□□□□□ -1.26
HOXC9P31274 F9-202ENST00000394090 1272 ntTSL 1 (best) BASIC7.15□□□□□ -1.26
HOXC9P31274 RNF212B-201ENST00000399905 1071 ntTSL 5 BASIC7.15□□□□□ -1.26
HOXC9P31274 RPL37P18-201ENST00000411602 243 ntBASIC7.15□□□□□ -1.26
HOXC9P31274 RPA2P2-201ENST00000419698 796 ntBASIC7.15□□□□□ -1.26
HOXC9P31274 AC092164.1-202ENST00000428036 486 ntTSL 3 BASIC7.15□□□□□ -1.26
HOXC9P31274 KCNIP1-205ENST00000434108 726 ntTSL 1 (best) BASIC7.15□□□□□ -1.26
HOXC9P31274 AF127577.2-201ENST00000436429 824 ntTSL 3 BASIC7.15□□□□□ -1.26
HOXC9P31274 AL807757.1-201ENST00000437846 424 ntTSL 3 BASIC7.15□□□□□ -1.26
HOXC9P31274 IKZF3-212ENST00000439016 1246 ntTSL 5 BASIC7.15□□□□□ -1.26
HOXC9P31274 IGBP1P3-201ENST00000447449 1000 ntBASIC7.15□□□□□ -1.26
HOXC9P31274 AC099344.3-201ENST00000454489 626 ntTSL 3 BASIC7.15□□□□□ -1.26
HOXC9P31274 LINC01436-201ENST00000457157 1048 ntTSL 2 BASIC7.15□□□□□ -1.26
HOXC9P31274 AC112496.1-201ENST00000497961 562 ntTSL 5 BASIC7.15□□□□□ -1.26
HOXC9P31274 AZIN1-AS1-203ENST00000517996 756 ntTSL 3 BASIC7.15□□□□□ -1.26
HOXC9P31274 RN7SL356P-201ENST00000582228 248 ntBASIC7.15□□□□□ -1.26
HOXC9P31274 AC008738.1-201ENST00000590117 375 ntTSL 5 BASIC7.15□□□□□ -1.26
HOXC9P31274 AC243960.1-203ENST00000595395 599 ntTSL 4 BASIC7.15□□□□□ -1.26
HOXC9P31274 FAM25E-202ENST00000608562 189 ntBASIC7.15□□□□□ -1.26
HOXC9P31274 AC100827.5-201ENST00000615883 426 ntBASIC7.15□□□□□ -1.26
HOXC9P31274 SHMT1-211ENST00000618902 378 ntTSL 5 BASIC7.15□□□□□ -1.26
HOXC9P31274 AC099494.2-201ENST00000623371 978 ntBASIC7.15□□□□□ -1.26
HOXC9P31274 AC073342.3-201ENST00000624211 193 ntBASIC7.15□□□□□ -1.26
HOXC9P31274 PRKCQ-AS1-218ENST00000624974 1132 ntTSL 5 BASIC7.15□□□□□ -1.26
HOXC9P31274 AC009234.1-201ENST00000634985 895 ntTSL 5 BASIC7.15□□□□□ -1.26
HOXC9P31274 AC073869.8-201ENST00000641806 335 ntBASIC7.15□□□□□ -1.26
HOXC9P31274 OR8D4-201ENST00000321355 1331 ntAPPRIS P1 BASIC7.15□□□□□ -1.26
HOXC9P31274 PSMD6-202ENST00000394431 1349 ntTSL 1 (best) BASIC7.15□□□□□ -1.26
HOXC9P31274 ALB-220ENST00000621628 1606 ntTSL 5 BASIC7.15□□□□□ -1.27
HOXC9P31274 MTUS1-202ENST00000297488 3731 ntAPPRIS ALT1 TSL 1 (best) BASIC7.15□□□□□ -1.27
HOXC9P31274 SAMD9L-202ENST00000411955 5831 ntAPPRIS P1 TSL 5 BASIC7.15□□□□□ -1.27
HOXC9P31274 AC104964.3-201ENST00000606115 2860 ntBASIC7.14□□□□□ -1.27
HOXC9P31274 SGO2-201ENST00000357799 4214 ntAPPRIS P2 TSL 1 (best) BASIC7.14□□□□□ -1.27
HOXC9P31274 MAP3K7-203ENST00000369327 4558 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
HOXC9P31274 RN7SKP115-201ENST00000363177 317 ntBASIC7.14□□□□□ -1.27
HOXC9P31274 MIR105-1-201ENST00000385222 81 ntBASIC7.14□□□□□ -1.27
HOXC9P31274 KIF2A-203ENST00000407818 2315 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
HOXC9P31274 PRR21-201ENST00000408934 1170 ntAPPRIS P1 BASIC7.14□□□□□ -1.27
HOXC9P31274 AL139128.1-201ENST00000413921 941 ntBASIC7.14□□□□□ -1.27
HOXC9P31274 AC073333.1-201ENST00000418907 648 ntTSL 3 BASIC7.14□□□□□ -1.27
HOXC9P31274 LINC01589-201ENST00000422971 548 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
HOXC9P31274 EI24P4-201ENST00000423683 1078 ntBASIC7.14□□□□□ -1.27
HOXC9P31274 TXNDC12-AS1-201ENST00000428794 391 ntTSL 3 BASIC7.14□□□□□ -1.27
HOXC9P31274 H2AFZP6-201ENST00000444403 394 ntBASIC7.14□□□□□ -1.27
HOXC9P31274 AC083899.1-201ENST00000454465 3819 ntBASIC7.14□□□□□ -1.27
HOXC9P31274 FO393408.1-201ENST00000458577 582 ntTSL 5 BASIC7.14□□□□□ -1.27
HOXC9P31274 ESRRG-219ENST00000487276 3015 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
HOXC9P31274 AC004980.4-201ENST00000513375 203 ntBASIC7.14□□□□□ -1.27
HOXC9P31274 E2F5-204ENST00000517476 1094 ntTSL 2 BASIC7.14□□□□□ -1.27
HOXC9P31274 AP002815.1-201ENST00000533740 386 ntTSL 3 BASIC7.14□□□□□ -1.27
HOXC9P31274 AL121594.3-201ENST00000557565 3857 ntAPPRIS P1 TSL 2 BASIC7.14□□□□□ -1.27
HOXC9P31274 AC107926.1-201ENST00000581673 621 ntTSL 3 BASIC7.14□□□□□ -1.27
HOXC9P31274 ZNF227-204ENST00000586228 569 ntTSL 2 BASIC7.14□□□□□ -1.27
HOXC9P31274 AC015726.1-202ENST00000602532 475 ntTSL 5 BASIC7.14□□□□□ -1.27
HOXC9P31274 AC010531.5-201ENST00000602779 450 ntTSL 3 BASIC7.14□□□□□ -1.27
HOXC9P31274 AP003789.1-201ENST00000617737 605 ntBASIC7.14□□□□□ -1.27
HOXC9P31274 AC023632.6-201ENST00000624338 2177 ntBASIC7.14□□□□□ -1.27
HOXC9P31274 AC087632.1-216ENST00000625619 487 ntAPPRIS P1 TSL 3 BASIC7.14□□□□□ -1.27
HOXC9P31274 TEX41-254ENST00000626394 423 ntTSL 5 BASIC7.14□□□□□ -1.27
HOXC9P31274 FIRRE-202ENST00000637577 1635 ntTSL 5 BASIC7.14□□□□□ -1.27
HOXC9P31274 MAPK10-236ENST00000638313 3971 ntTSL 5 BASIC7.14□□□□□ -1.27
HOXC9P31274 AC068389.1-202ENST00000526470 3564 ntTSL 2 BASIC7.14□□□□□ -1.27
HOXC9P31274 IFRD1-217ENST00000621379 3232 ntTSL 2 BASIC7.14□□□□□ -1.27
HOXC9P31274 MRC1-201ENST00000569591 5198 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
HOXC9P31274 EBF1-211ENST00000622875 4430 ntTSL 5 BASIC7.13□□□□□ -1.27
HOXC9P31274 OR1E1-201ENST00000322608 1307 ntAPPRIS P1 BASIC7.13□□□□□ -1.27
HOXC9P31274 APELA-202ENST00000507152 2602 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
HOXC9P31274 SNURFL-201ENST00000309296 343 ntBASIC7.13□□□□□ -1.27
HOXC9P31274 SMC4P1-201ENST00000414479 527 ntBASIC7.13□□□□□ -1.27
HOXC9P31274 ATP6V1G1P7-201ENST00000415853 349 ntBASIC7.13□□□□□ -1.27
HOXC9P31274 LINC01593-201ENST00000424355 388 ntTSL 5 BASIC7.13□□□□□ -1.27
HOXC9P31274 AL008723.2-201ENST00000426354 562 ntTSL 4 BASIC7.13□□□□□ -1.27
HOXC9P31274 AL772161.1-201ENST00000439130 476 ntBASIC7.13□□□□□ -1.27
HOXC9P31274 AC091685.1-201ENST00000442436 448 ntTSL 3 BASIC7.13□□□□□ -1.27
HOXC9P31274 AL160271.1-201ENST00000444708 829 ntTSL 3 BASIC7.13□□□□□ -1.27
HOXC9P31274 AP000470.1-201ENST00000448063 693 ntTSL 5 BASIC7.13□□□□□ -1.27
HOXC9P31274 AC002075.1-201ENST00000457396 676 ntBASIC7.13□□□□□ -1.27
HOXC9P31274 RN7SL423P-201ENST00000486202 304 ntBASIC7.13□□□□□ -1.27
HOXC9P31274 RPL37-204ENST00000508493 553 ntAPPRIS ALT1 TSL 1 (best) BASIC7.13□□□□□ -1.27
HOXC9P31274 EIF3KP3-201ENST00000514461 639 ntBASIC7.13□□□□□ -1.27
HOXC9P31274 AP002373.2-201ENST00000541631 1060 ntBASIC7.13□□□□□ -1.27
HOXC9P31274 AC103968.1-201ENST00000557841 573 ntBASIC7.13□□□□□ -1.27
HOXC9P31274 AC087501.4-201ENST00000574460 235 ntTSL 5 BASIC7.13□□□□□ -1.27
HOXC9P31274 AC091953.3-201ENST00000623220 236 ntBASIC7.13□□□□□ -1.27
HOXC9P31274 NEK3-211ENST00000629912 141 ntTSL 5 BASIC7.13□□□□□ -1.27
HOXC9P31274 NAP1L1-227ENST00000618691 13505 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
HOXC9P31274 SLC30A7-203ENST00000370112 7898 ntAPPRIS P1 TSL 1 (best) BASIC7.13□□□□□ -1.27
HOXC9P31274 CLCC1-204ENST00000369968 4151 ntTSL 5 BASIC7.13□□□□□ -1.27
HOXC9P31274 OR6Y1-203ENST00000641622 5128 ntAPPRIS P1 BASIC7.13□□□□□ -1.27
HOXC9P31274 PCA3-201ENST00000412654 3922 ntTSL 1 (best) BASIC7.13□□□□□ -1.27
HOXC9P31274 RAPGEF4-213ENST00000535187 3707 ntTSL 2 BASIC7.13□□□□□ -1.27
HOXC9P31274 GABRA1-218ENST00000637827 1838 ntAPPRIS P1 TSL 5 BASIC7.13□□□□□ -1.27
HOXC9P31274 AC114774.1-201ENST00000507410 1770 ntBASIC7.13□□□□□ -1.27
HOXC9P31274 CREM-202ENST00000342105 1541 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
HOXC9P31274 GPR18-202ENST00000397470 1468 ntAPPRIS P1 TSL 1 (best) BASIC7.12□□□□□ -1.27
HOXC9P31274 AP005212.5-201ENST00000577614 3505 ntTSL 5 BASIC7.12□□□□□ -1.27
HOXC9P31274 CAST-202ENST00000325674 3356 ntTSL 5 BASIC7.12□□□□□ -1.27
HOXC9P31274 AL050403.1-201ENST00000448859 2006 ntTSL 1 (best) BASIC7.12□□□□□ -1.27
Retrieved 100 of 98,524 protein–RNA pairs in 108.1 ms