Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 KMT2D-201ENST00000301067 19419 ntAPPRIS P1 TSL 5 BASIC5.21□□□□□ -1.58
SDC1P18827 AL078621.3-201ENST00000623707 2042 ntBASIC5.21□□□□□ -1.58
SDC1P18827 AC233968.1-201ENST00000611212 1300 ntBASIC5.21□□□□□ -1.58
SDC1P18827 PTK2-213ENST00000519465 3279 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
SDC1P18827 BBX-201ENST00000325805 3517 ntAPPRIS ALT2 TSL 1 (best) BASIC5.2□□□□□ -1.58
SDC1P18827 PPARGC1A-201ENST00000264867 6318 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
SDC1P18827 AL442128.2-201ENST00000620246 1824 ntBASIC5.2□□□□□ -1.58
SDC1P18827 LINC02019-201ENST00000608605 2060 ntBASIC5.2□□□□□ -1.58
SDC1P18827 AC005261.2-201ENST00000593427 4258 ntBASIC5.2□□□□□ -1.58
SDC1P18827 ESRRG-204ENST00000361525 5363 ntAPPRIS P1 TSL 5 BASIC5.2□□□□□ -1.58
SDC1P18827 DYNC1I2-201ENST00000340296 2589 ntAPPRIS P4 TSL 1 (best) BASIC5.2□□□□□ -1.58
SDC1P18827 OR12D2-207ENST00000642051 1496 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
SDC1P18827 ZNF81-202ENST00000338637 7859 ntAPPRIS P1 TSL 3 BASIC5.2□□□□□ -1.58
SDC1P18827 KCNJ1-204ENST00000392665 4074 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
SDC1P18827 NHSL2-204ENST00000631375 12593 ntTSL 5 BASIC5.2□□□□□ -1.58
SDC1P18827 PSG1-202ENST00000312439 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC5.2□□□□□ -1.58
SDC1P18827 YES1P1-201ENST00000418510 1628 ntBASIC5.2□□□□□ -1.58
SDC1P18827 LINC02047-201ENST00000494761 1371 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
SDC1P18827 GHR-207ENST00000537449 4419 ntAPPRIS P1 TSL 5 BASIC5.2□□□□□ -1.58
SDC1P18827 SPATA17-201ENST00000366933 5818 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
SDC1P18827 AP000473.2-201ENST00000602659 1537 ntBASIC5.2□□□□□ -1.58
SDC1P18827 AC025428.2-201ENST00000435367 2672 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
SDC1P18827 ABCC9-204ENST00000538350 2672 ntTSL 2 BASIC5.2□□□□□ -1.58
SDC1P18827 RN7SKP6-201ENST00000364795 319 ntBASIC5.2□□□□□ -1.58
SDC1P18827 AC092111.3-201ENST00000402465 496 ntAPPRIS P1 TSL 2 BASIC5.2□□□□□ -1.58
SDC1P18827 GAPDHP42-201ENST00000406848 981 ntBASIC5.2□□□□□ -1.58
SDC1P18827 LINC00396-201ENST00000411690 439 ntTSL 3 BASIC5.2□□□□□ -1.58
SDC1P18827 DPPA2P2-201ENST00000418220 897 ntBASIC5.2□□□□□ -1.58
SDC1P18827 Z98742.1-201ENST00000419801 632 ntTSL 3 BASIC5.2□□□□□ -1.58
SDC1P18827 OXSM-202ENST00000420173 1256 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
SDC1P18827 AL133173.1-201ENST00000423458 397 ntBASIC5.2□□□□□ -1.58
SDC1P18827 AKR1B10P1-201ENST00000425765 942 ntBASIC5.2□□□□□ -1.58
SDC1P18827 AC115283.1-201ENST00000427353 400 ntBASIC5.2□□□□□ -1.58
SDC1P18827 RPL7AP49-201ENST00000429522 581 ntBASIC5.2□□□□□ -1.58
SDC1P18827 AL591438.1-201ENST00000433508 581 ntBASIC5.2□□□□□ -1.58
SDC1P18827 AL136988.2-201ENST00000440729 861 ntTSL 3 BASIC5.2□□□□□ -1.58
SDC1P18827 AL035530.1-201ENST00000446887 331 ntTSL 3 BASIC5.2□□□□□ -1.58
SDC1P18827 MTND4LP12-201ENST00000448237 295 ntBASIC5.2□□□□□ -1.58
SDC1P18827 AC090804.1-201ENST00000448870 490 ntBASIC5.2□□□□□ -1.58
SDC1P18827 LRRC37A14P-201ENST00000452297 462 ntBASIC5.2□□□□□ -1.58
SDC1P18827 AL445665.1-202ENST00000452436 324 ntBASIC5.2□□□□□ -1.58
SDC1P18827 TRBV2-201ENST00000455382 421 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
SDC1P18827 C21orf62-202ENST00000479548 964 ntAPPRIS P1 TSL 1 (best) BASIC5.2□□□□□ -1.58
SDC1P18827 AC112184.1-201ENST00000505179 312 ntBASIC5.2□□□□□ -1.58
SDC1P18827 UCHL1-AS1-201ENST00000507190 592 ntTSL 4 BASIC5.2□□□□□ -1.58
SDC1P18827 AC109464.1-201ENST00000511091 819 ntBASIC5.2□□□□□ -1.58
SDC1P18827 AC034238.3-201ENST00000512349 591 ntTSL 4 BASIC5.2□□□□□ -1.58
SDC1P18827 RN7SKP5-201ENST00000517045 272 ntBASIC5.2□□□□□ -1.58
SDC1P18827 AC009623.1-201ENST00000517964 1131 ntTSL 2 BASIC5.2□□□□□ -1.58
SDC1P18827 CDC42P3-201ENST00000518493 633 ntBASIC5.2□□□□□ -1.58
SDC1P18827 AC246817.1-201ENST00000520024 610 ntTSL 3 BASIC5.2□□□□□ -1.58
SDC1P18827 AC079600.1-201ENST00000550326 297 ntBASIC5.2□□□□□ -1.58
SDC1P18827 AC124784.1-201ENST00000552426 571 ntTSL 3 BASIC5.2□□□□□ -1.58
SDC1P18827 AC015660.3-201ENST00000559569 198 ntTSL 3 BASIC5.2□□□□□ -1.58
SDC1P18827 AC048382.2-201ENST00000560239 492 ntTSL 2 BASIC5.2□□□□□ -1.58
SDC1P18827 AC090415.2-201ENST00000584078 374 ntTSL 3 BASIC5.2□□□□□ -1.58
SDC1P18827 AC025278.1-201ENST00000593558 515 ntTSL 2 BASIC5.2□□□□□ -1.58
SDC1P18827 LINC02246-206ENST00000630211 712 ntTSL 5 BASIC5.2□□□□□ -1.58
SDC1P18827 AC092574.2-201ENST00000631198 753 ntTSL 3 BASIC5.2□□□□□ -1.58
SDC1P18827 MIR193BHG-214ENST00000641765 509 ntBASIC5.2□□□□□ -1.58
SDC1P18827 USP7-202ENST00000381886 3587 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
SDC1P18827 GLIPR1L2-202ENST00000378692 1903 ntTSL 1 (best) BASIC5.2□□□□□ -1.58
SDC1P18827 OR6C75-202ENST00000641576 4569 ntAPPRIS P1 BASIC5.2□□□□□ -1.58
SDC1P18827 EIF3E-206ENST00000519030 1324 ntTSL 5 BASIC5.2□□□□□ -1.58
SDC1P18827 MCM9-209ENST00000619706 4822 ntAPPRIS P1 TSL 5 BASIC5.2□□□□□ -1.58
SDC1P18827 KCNC4-201ENST00000369787 18750 ntAPPRIS P3 TSL 1 (best) BASIC5.2□□□□□ -1.58
SDC1P18827 METTL6-203ENST00000443029 4020 ntAPPRIS P1 TSL 5 BASIC5.2□□□□□ -1.58
SDC1P18827 NCOA1-206ENST00000407230 4745 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
SDC1P18827 AIG1-208ENST00000494282 3393 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
SDC1P18827 N4BP2L2-IT2-201ENST00000629393 4890 ntBASIC5.19□□□□□ -1.58
SDC1P18827 DYNC1I2-207ENST00000410079 2159 ntTSL 2 BASIC5.19□□□□□ -1.58
SDC1P18827 ADGRG2-203ENST00000356606 4630 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
SDC1P18827 ZNF567-203ENST00000585696 3734 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
SDC1P18827 ZNF26-201ENST00000328654 17601 ntAPPRIS P3 TSL 1 (best) BASIC5.19□□□□□ -1.58
SDC1P18827 CRYAB-201ENST00000227251 848 ntAPPRIS P1 TSL 5 BASIC5.19□□□□□ -1.58
SDC1P18827 MYRFL-201ENST00000299350 820 ntTSL 5 BASIC5.19□□□□□ -1.58
SDC1P18827 WFDC11-201ENST00000324384 614 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
SDC1P18827 AGBL4-201ENST00000334103 881 ntTSL 5 BASIC5.19□□□□□ -1.58
SDC1P18827 NUDT6-202ENST00000339154 1065 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
SDC1P18827 WFDC11-202ENST00000356562 642 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
SDC1P18827 SVBP-202ENST00000372522 650 ntAPPRIS P1 TSL 3 BASIC5.19□□□□□ -1.58
SDC1P18827 YAF2-202ENST00000380790 1211 ntTSL 2 BASIC5.19□□□□□ -1.58
SDC1P18827 RPL34-203ENST00000394668 853 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
SDC1P18827 DBIP1-201ENST00000401435 260 ntBASIC5.19□□□□□ -1.58
SDC1P18827 AL691447.1-201ENST00000419456 387 ntBASIC5.19□□□□□ -1.58
SDC1P18827 AC093155.2-201ENST00000420734 937 ntBASIC5.19□□□□□ -1.58
SDC1P18827 AL513188.1-201ENST00000421167 614 ntTSL 3 BASIC5.19□□□□□ -1.58
SDC1P18827 AL162430.2-201ENST00000422306 435 ntTSL 3 BASIC5.19□□□□□ -1.58
SDC1P18827 IL23R-203ENST00000425614 1295 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
SDC1P18827 AL713851.2-201ENST00000431209 332 ntTSL 2 BASIC5.19□□□□□ -1.58
SDC1P18827 AC012594.1-271ENST00000438635 736 ntTSL 3 BASIC5.19□□□□□ -1.58
SDC1P18827 AL450996.1-201ENST00000445574 1202 ntBASIC5.19□□□□□ -1.58
SDC1P18827 LINC01422-203ENST00000447149 509 ntTSL 4 BASIC5.19□□□□□ -1.58
SDC1P18827 SEC22A-207ENST00000481965 673 ntTSL 3 BASIC5.19□□□□□ -1.58
SDC1P18827 NPM1P28-201ENST00000492269 840 ntBASIC5.19□□□□□ -1.58
SDC1P18827 GYPB-213ENST00000513128 360 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
SDC1P18827 AC092709.1-201ENST00000521355 1045 ntBASIC5.19□□□□□ -1.58
SDC1P18827 ARL6IP1P3-201ENST00000524544 560 ntBASIC5.19□□□□□ -1.58
SDC1P18827 GLYATL1P2-201ENST00000529451 510 ntTSL 2 BASIC5.19□□□□□ -1.58
SDC1P18827 AC005363.1-201ENST00000530779 351 ntBASIC5.19□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 102.9 ms