Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 OR10G4-203ENST00000641722 3301 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
HMGA1P17096 AC239868.2-201ENST00000564237 4527 ntBASIC5.59□□□□□ -1.51
HMGA1P17096 FGF13-201ENST00000305414 1939 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
HMGA1P17096 TMBIM4-201ENST00000286424 989 ntTSL 5 BASIC5.59□□□□□ -1.51
HMGA1P17096 SNORA17.1-201ENST00000362945 126 ntBASIC5.59□□□□□ -1.51
HMGA1P17096 SPANXN1-201ENST00000370493 1276 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
HMGA1P17096 AC022535.1-201ENST00000420082 691 ntTSL 3 BASIC5.59□□□□□ -1.51
HMGA1P17096 AC096711.3-201ENST00000420721 582 ntTSL 4 BASIC5.59□□□□□ -1.51
HMGA1P17096 AC021876.1-201ENST00000425959 359 ntBASIC5.59□□□□□ -1.51
HMGA1P17096 AL137005.1-201ENST00000452944 719 ntTSL 5 BASIC5.59□□□□□ -1.51
HMGA1P17096 AC068489.1-201ENST00000453706 261 ntTSL 5 BASIC5.59□□□□□ -1.51
HMGA1P17096 LINC02499-201ENST00000502291 763 ntTSL 3 BASIC5.59□□□□□ -1.51
HMGA1P17096 LINC02513-201ENST00000503465 500 ntTSL 2 BASIC5.59□□□□□ -1.51
HMGA1P17096 AC010395.1-201ENST00000507627 697 ntTSL 5 BASIC5.59□□□□□ -1.51
HMGA1P17096 LNX1-AS1-204ENST00000514364 495 ntTSL 3 BASIC5.59□□□□□ -1.51
HMGA1P17096 MSC-AS1-205ENST00000519068 569 ntTSL 3 BASIC5.59□□□□□ -1.51
HMGA1P17096 BMPR1APS2-201ENST00000527904 1012 ntBASIC5.59□□□□□ -1.51
HMGA1P17096 MIR4435-2HG-220ENST00000609902 603 ntTSL 3 BASIC5.59□□□□□ -1.51
HMGA1P17096 AL138960.1-201ENST00000613838 513 ntBASIC5.59□□□□□ -1.51
HMGA1P17096 AC090510.2-201ENST00000617465 629 ntBASIC5.59□□□□□ -1.51
HMGA1P17096 GVQW2-203ENST00000641401 327 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
HMGA1P17096 ZNF26-202ENST00000534834 4853 ntAPPRIS ALT2 TSL 2 BASIC5.59□□□□□ -1.51
HMGA1P17096 SLX4IP-201ENST00000334534 6062 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
HMGA1P17096 GAPT-202ENST00000396776 3016 ntAPPRIS P1 TSL 2 BASIC5.59□□□□□ -1.51
HMGA1P17096 AC022893.1-201ENST00000517664 3549 ntTSL 2 BASIC5.59□□□□□ -1.51
HMGA1P17096 KBTBD8-201ENST00000417314 4680 ntAPPRIS P1 TSL 2 BASIC5.59□□□□□ -1.51
HMGA1P17096 ZNF506-201ENST00000443905 4095 ntAPPRIS P3 TSL 2 BASIC5.59□□□□□ -1.51
HMGA1P17096 MPHOSPH9-220ENST00000606320 6351 ntAPPRIS P2 TSL 5 BASIC5.59□□□□□ -1.51
HMGA1P17096 CHD2-202ENST00000420239 2221 ntTSL 1 (best) BASIC5.59□□□□□ -1.52
HMGA1P17096 AC232271.1-201ENST00000602455 2715 ntBASIC5.59□□□□□ -1.52
HMGA1P17096 EPB41L2-220ENST00000528282 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.52
HMGA1P17096 UNC79-203ENST00000553484 9100 ntTSL 5 BASIC5.58□□□□□ -1.52
HMGA1P17096 AKAP6-213ENST00000557354 5259 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
HMGA1P17096 RAPGEF4-213ENST00000535187 3707 ntTSL 2 BASIC5.58□□□□□ -1.52
HMGA1P17096 NBPF19-201ENST00000369227 3670 ntTSL 5 BASIC5.58□□□□□ -1.52
HMGA1P17096 NBPF20-203ENST00000594479 3670 ntTSL 5 BASIC5.58□□□□□ -1.52
HMGA1P17096 NBPF14-210ENST00000621066 3670 ntTSL 5 BASIC5.58□□□□□ -1.52
HMGA1P17096 AC004784.1-201ENST00000635495 1833 ntTSL 5 BASIC5.58□□□□□ -1.52
HMGA1P17096 PLEKHA1-203ENST00000368990 14010 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
HMGA1P17096 SSH1-202ENST00000326495 13040 ntAPPRIS P3 TSL 1 (best) BASIC5.58□□□□□ -1.52
HMGA1P17096 RNA5SP305-201ENST00000362665 119 ntBASIC5.58□□□□□ -1.52
HMGA1P17096 SPATA42-201ENST00000369989 535 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
HMGA1P17096 SNORD56.6-201ENST00000384569 71 ntBASIC5.58□□□□□ -1.52
HMGA1P17096 RNU6ATAC21P-201ENST00000408656 126 ntBASIC5.58□□□□□ -1.52
HMGA1P17096 LINC01740-201ENST00000423842 332 ntTSL 2 BASIC5.58□□□□□ -1.52
HMGA1P17096 Z82246.1-201ENST00000428201 457 ntTSL 2 BASIC5.58□□□□□ -1.52
HMGA1P17096 RPL34P27-201ENST00000428810 349 ntBASIC5.58□□□□□ -1.52
HMGA1P17096 AL136140.1-201ENST00000436113 473 ntTSL 3 BASIC5.58□□□□□ -1.52
HMGA1P17096 AC018467.1-203ENST00000440785 506 ntTSL 3 BASIC5.58□□□□□ -1.52
HMGA1P17096 FLJ27354-202ENST00000443562 770 ntTSL 3 BASIC5.58□□□□□ -1.52
HMGA1P17096 AC092637.1-201ENST00000444745 510 ntTSL 5 BASIC5.58□□□□□ -1.52
HMGA1P17096 Z92846.1-201ENST00000456203 268 ntBASIC5.58□□□□□ -1.52
HMGA1P17096 AC090114.3-201ENST00000479267 829 ntBASIC5.58□□□□□ -1.52
HMGA1P17096 RN7SL423P-201ENST00000486202 304 ntBASIC5.58□□□□□ -1.52
HMGA1P17096 SCARNA20.4-201ENST00000516969 131 ntBASIC5.58□□□□□ -1.52
HMGA1P17096 AC134349.2-201ENST00000535136 910 ntBASIC5.58□□□□□ -1.52
HMGA1P17096 AC024940.3-201ENST00000538551 316 ntBASIC5.58□□□□□ -1.52
HMGA1P17096 ETFRF1-211ENST00000557540 1259 ntAPPRIS ALT1 TSL 2 BASIC5.58□□□□□ -1.52
HMGA1P17096 USP3-AS1-202ENST00000559357 455 ntTSL 2 BASIC5.58□□□□□ -1.52
HMGA1P17096 AC092132.1-201ENST00000570859 352 ntTSL 3 BASIC5.58□□□□□ -1.52
HMGA1P17096 AC090617.5-201ENST00000571815 528 ntTSL 3 BASIC5.58□□□□□ -1.52
HMGA1P17096 AC024940.4-201ENST00000605507 246 ntBASIC5.58□□□□□ -1.52
HMGA1P17096 AC133644.2-201ENST00000608142 540 ntBASIC5.58□□□□□ -1.52
HMGA1P17096 MYOCOS-202ENST00000636788 1039 ntAPPRIS ALT2 TSL 5 BASIC5.58□□□□□ -1.52
HMGA1P17096 OR6C4-203ENST00000641851 4989 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
HMGA1P17096 ZNF573-201ENST00000339503 2014 ntTSL 5 BASIC5.58□□□□□ -1.52
HMGA1P17096 ZNF189-201ENST00000259395 3115 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
HMGA1P17096 ZNF850-202ENST00000591344 7714 ntAPPRIS P3 TSL 1 (best) BASIC5.58□□□□□ -1.52
HMGA1P17096 LINC00704-201ENST00000430998 1478 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
HMGA1P17096 ABCB11-201ENST00000263817 4775 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
HMGA1P17096 AC114774.1-201ENST00000507410 1770 ntBASIC5.57□□□□□ -1.52
HMGA1P17096 AL034549.2-201ENST00000618285 3373 ntBASIC5.57□□□□□ -1.52
HMGA1P17096 PPP1R2P3-201ENST00000522232 1991 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
HMGA1P17096 LRRC37A3-204ENST00000400877 3273 ntTSL 2 BASIC5.57□□□□□ -1.52
HMGA1P17096 FCER1G-201ENST00000289902 591 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
HMGA1P17096 TRAJ58-201ENST00000390481 63 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
HMGA1P17096 CYP2AC1P-201ENST00000407830 1173 ntBASIC5.57□□□□□ -1.52
HMGA1P17096 AL121957.1-202ENST00000437040 329 ntTSL 3 BASIC5.57□□□□□ -1.52
HMGA1P17096 RPL12P3-201ENST00000440080 396 ntBASIC5.57□□□□□ -1.52
HMGA1P17096 AC073465.2-201ENST00000440938 498 ntBASIC5.57□□□□□ -1.52
HMGA1P17096 CEACAMP7-201ENST00000444105 496 ntBASIC5.57□□□□□ -1.52
HMGA1P17096 AC073850.1-201ENST00000449243 255 ntBASIC5.57□□□□□ -1.52
HMGA1P17096 TRBV2-201ENST00000455382 421 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
HMGA1P17096 AC009127.1-201ENST00000467090 155 ntBASIC5.57□□□□□ -1.52
HMGA1P17096 AC109462.1-201ENST00000491087 368 ntBASIC5.57□□□□□ -1.52
HMGA1P17096 AC010451.1-201ENST00000509057 556 ntTSL 3 BASIC5.57□□□□□ -1.52
HMGA1P17096 AZIN1-AS1-203ENST00000517996 756 ntTSL 3 BASIC5.57□□□□□ -1.52
HMGA1P17096 SUMO2P19-201ENST00000518920 295 ntBASIC5.57□□□□□ -1.52
HMGA1P17096 AC090103.1-201ENST00000520386 485 ntTSL 2 BASIC5.57□□□□□ -1.52
HMGA1P17096 ASB8-202ENST00000535055 657 ntTSL 2 BASIC5.57□□□□□ -1.52
HMGA1P17096 AC002563.1-201ENST00000535109 451 ntTSL 3 BASIC5.57□□□□□ -1.52
HMGA1P17096 LINC02293-202ENST00000548385 358 ntTSL 3 BASIC5.57□□□□□ -1.52
HMGA1P17096 HAGLR-211ENST00000549329 609 ntTSL 4 BASIC5.57□□□□□ -1.52
HMGA1P17096 AL109935.2-201ENST00000587737 395 ntTSL 5 BASIC5.57□□□□□ -1.52
HMGA1P17096 ERVK-28-203ENST00000600419 457 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
HMGA1P17096 AC053481.2-202ENST00000582394 1500 ntBASIC5.57□□□□□ -1.52
HMGA1P17096 LINC01422-201ENST00000434868 6043 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
HMGA1P17096 GTDC1-220ENST00000618778 2317 ntTSL 5 BASIC5.57□□□□□ -1.52
HMGA1P17096 MCM10-201ENST00000378694 4587 ntTSL 5 BASIC5.57□□□□□ -1.52
HMGA1P17096 RAPGEF4-215ENST00000540783 3974 ntTSL 2 BASIC5.57□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 96.8 ms