Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 CUL4B-204ENST00000404115 3264 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
COL3A1P02461 Z82209.2-201ENST00000623410 2012 ntBASIC7.07□□□□□ -1.28
COL3A1P02461 CYP19A1-201ENST00000396402 4417 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
COL3A1P02461 SETX-201ENST00000224140 11100 ntAPPRIS P2 TSL 1 (best) BASIC7.07□□□□□ -1.28
COL3A1P02461 PDE4D-228ENST00000636120 6659 ntTSL 5 BASIC7.07□□□□□ -1.28
COL3A1P02461 ZNF571-203ENST00000451802 2265 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
COL3A1P02461 RALGAPA1-202ENST00000382366 6328 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
COL3A1P02461 AP1M1-201ENST00000291439 13193 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
COL3A1P02461 FCHSD2-201ENST00000311172 4340 ntTSL 1 (best) BASIC7.07□□□□□ -1.28
COL3A1P02461 THRB-IT1-201ENST00000425296 1754 ntTSL 2 BASIC7.07□□□□□ -1.28
COL3A1P02461 BTBD10-210ENST00000530907 1871 ntAPPRIS ALT1 TSL 2 BASIC7.07□□□□□ -1.28
COL3A1P02461 DMD-202ENST00000343523 5623 ntTSL 5 BASIC7.06□□□□□ -1.28
COL3A1P02461 RPTN-201ENST00000316073 3569 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
COL3A1P02461 RPL23P2-201ENST00000320371 421 ntBASIC7.06□□□□□ -1.28
COL3A1P02461 STATH-202ENST00000381060 534 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
COL3A1P02461 MIR105-2-201ENST00000385083 81 ntBASIC7.06□□□□□ -1.28
COL3A1P02461 AC092920.1-201ENST00000428516 678 ntTSL 5 BASIC7.06□□□□□ -1.28
COL3A1P02461 TPTE2P1-204ENST00000435256 593 ntBASIC7.06□□□□□ -1.28
COL3A1P02461 PSMD10P3-201ENST00000437000 448 ntBASIC7.06□□□□□ -1.28
COL3A1P02461 GYG2-AS1-201ENST00000445107 515 ntTSL 5 BASIC7.06□□□□□ -1.28
COL3A1P02461 AC023271.1-201ENST00000445936 1090 ntBASIC7.06□□□□□ -1.28
COL3A1P02461 APOPT1-204ENST00000473127 739 ntTSL 3 BASIC7.06□□□□□ -1.28
COL3A1P02461 AC073359.2-201ENST00000478814 351 ntTSL 3 BASIC7.06□□□□□ -1.28
COL3A1P02461 AC104629.1-201ENST00000494226 508 ntBASIC7.06□□□□□ -1.28
COL3A1P02461 BLNK-209ENST00000495266 440 ntTSL 5 BASIC7.06□□□□□ -1.28
COL3A1P02461 RN7SL808P-201ENST00000496066 299 ntBASIC7.06□□□□□ -1.28
COL3A1P02461 AC231760.1-201ENST00000498002 260 ntBASIC7.06□□□□□ -1.28
COL3A1P02461 AC024132.2-201ENST00000506878 482 ntTSL 3 BASIC7.06□□□□□ -1.28
COL3A1P02461 AC019227.1-201ENST00000526902 510 ntBASIC7.06□□□□□ -1.28
COL3A1P02461 AP006259.1-201ENST00000528520 561 ntTSL 2 BASIC7.06□□□□□ -1.28
COL3A1P02461 AC120349.1-201ENST00000599498 282 ntTSL 5 BASIC7.06□□□□□ -1.28
COL3A1P02461 AC007786.3-201ENST00000615154 596 ntBASIC7.06□□□□□ -1.28
COL3A1P02461 TEX41-254ENST00000626394 423 ntTSL 5 BASIC7.06□□□□□ -1.28
COL3A1P02461 OR8D4-201ENST00000321355 1331 ntAPPRIS P1 BASIC7.06□□□□□ -1.28
COL3A1P02461 OR1E1-201ENST00000322608 1307 ntAPPRIS P1 BASIC7.06□□□□□ -1.28
COL3A1P02461 CASP5-208ENST00000526056 1344 ntTSL 5 BASIC7.06□□□□□ -1.28
COL3A1P02461 SUN3-203ENST00000412142 1448 ntTSL 5 BASIC7.06□□□□□ -1.28
COL3A1P02461 SCN2A-215ENST00000637266 8610 ntAPPRIS ALT1 TSL 5 BASIC7.06□□□□□ -1.28
COL3A1P02461 MTPAP-201ENST00000263063 5601 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
COL3A1P02461 MAPK6PS2-201ENST00000379571 2060 ntBASIC7.06□□□□□ -1.28
COL3A1P02461 MOSPD2-201ENST00000380492 4163 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
COL3A1P02461 ITSN1-206ENST00000381318 17015 ntAPPRIS P3 TSL 1 (best) BASIC7.06□□□□□ -1.28
COL3A1P02461 SLC4A10-201ENST00000272716 3414 ntTSL 5 BASIC7.06□□□□□ -1.28
COL3A1P02461 GJC1-207ENST00000590758 7566 ntAPPRIS P1 TSL 3 BASIC7.06□□□□□ -1.28
COL3A1P02461 SELL-201ENST00000236147 2436 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
COL3A1P02461 RNU1-43P-201ENST00000365052 165 ntBASIC7.05□□□□□ -1.28
COL3A1P02461 FBXO25-204ENST00000382824 10386 ntAPPRIS P4 TSL 1 (best) BASIC7.05□□□□□ -1.28
COL3A1P02461 AC022535.1-201ENST00000420082 691 ntTSL 3 BASIC7.05□□□□□ -1.28
COL3A1P02461 ANKRD10-IT1-201ENST00000426991 800 ntTSL 2 BASIC7.05□□□□□ -1.28
COL3A1P02461 MTND2P40-201ENST00000436718 841 ntBASIC7.05□□□□□ -1.28
COL3A1P02461 OFD1P17-201ENST00000437639 3018 ntBASIC7.05□□□□□ -1.28
COL3A1P02461 AL139121.1-201ENST00000445647 244 ntTSL 2 BASIC7.05□□□□□ -1.28
COL3A1P02461 IRAK4-203ENST00000448290 1381 ntTSL 5 BASIC7.05□□□□□ -1.28
COL3A1P02461 LINC01158-205ENST00000458253 747 ntTSL 5 BASIC7.05□□□□□ -1.28
COL3A1P02461 AC012629.1-201ENST00000503953 342 ntTSL 3 BASIC7.05□□□□□ -1.28
COL3A1P02461 AC108043.1-201ENST00000512696 574 ntBASIC7.05□□□□□ -1.28
COL3A1P02461 HMGN1P9-201ENST00000515212 298 ntBASIC7.05□□□□□ -1.28
COL3A1P02461 NAV2-AS5-201ENST00000528726 3307 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
COL3A1P02461 KCTD21-AS1-206ENST00000532831 856 ntTSL 2 BASIC7.05□□□□□ -1.28
COL3A1P02461 MPDZ-212ENST00000538841 3186 ntTSL 2 BASIC7.05□□□□□ -1.28
COL3A1P02461 ETFRF1-202ENST00000553788 708 ntTSL 3 BASIC7.05□□□□□ -1.28
COL3A1P02461 LINC01580-201ENST00000555255 561 ntTSL 4 BASIC7.05□□□□□ -1.28
COL3A1P02461 LINC01568-202ENST00000555721 1325 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
COL3A1P02461 SNX18P3-202ENST00000565670 1750 ntBASIC7.05□□□□□ -1.28
COL3A1P02461 MIR3691-201ENST00000578066 90 ntBASIC7.05□□□□□ -1.28
COL3A1P02461 MIR7515HG-254ENST00000593269 943 ntTSL 5 BASIC7.05□□□□□ -1.28
COL3A1P02461 AL021368.1-201ENST00000607490 540 ntBASIC7.05□□□□□ -1.28
COL3A1P02461 AL136295.6-201ENST00000610486 658 ntBASIC7.05□□□□□ -1.28
COL3A1P02461 RPSAP73-201ENST00000614820 330 ntBASIC7.05□□□□□ -1.28
COL3A1P02461 MIR6730-201ENST00000622213 67 ntBASIC7.05□□□□□ -1.28
COL3A1P02461 WDR75-207ENST00000631047 270 ntTSL 5 BASIC7.05□□□□□ -1.28
COL3A1P02461 DUXB-201ENST00000633875 1079 ntAPPRIS P1 TSL 3 BASIC7.05□□□□□ -1.28
COL3A1P02461 DAOA-212ENST00000640578 378 ntAPPRIS ALT2 TSL 5 BASIC7.05□□□□□ -1.28
COL3A1P02461 UNC13B-209ENST00000635942 14550 ntAPPRIS ALT2 TSL 5 BASIC7.05□□□□□ -1.28
COL3A1P02461 RPL37-201ENST00000274242 7686 ntAPPRIS P2 TSL 1 (best) BASIC7.05□□□□□ -1.28
COL3A1P02461 SLITRK4-202ENST00000356928 3074 ntAPPRIS P1 TSL 2 BASIC7.05□□□□□ -1.28
COL3A1P02461 KIF2A-203ENST00000407818 2315 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
COL3A1P02461 POLQ-204ENST00000621776 9055 ntTSL 5 BASIC7.05□□□□□ -1.28
COL3A1P02461 CPEB4-202ENST00000334035 6705 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
COL3A1P02461 FOCAD-201ENST00000338382 5765 ntAPPRIS P1 TSL 5 BASIC7.05□□□□□ -1.28
COL3A1P02461 PCDH18-203ENST00000507846 4625 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
COL3A1P02461 CACNA1C-220ENST00000399655 13433 ntAPPRIS ALT2 TSL 1 (best) BASIC7.05□□□□□ -1.28
COL3A1P02461 FOXP2-202ENST00000360232 1412 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
COL3A1P02461 RNASE9-201ENST00000338904 1049 ntAPPRIS P3 TSL 1 (best) BASIC7.04□□□□□ -1.28
COL3A1P02461 MIR223-201ENST00000385204 110 ntBASIC7.04□□□□□ -1.28
COL3A1P02461 MIR105-1-201ENST00000385222 81 ntBASIC7.04□□□□□ -1.28
COL3A1P02461 AL109941.1-201ENST00000401925 229 ntBASIC7.04□□□□□ -1.28
COL3A1P02461 AL590730.1-201ENST00000426283 398 ntTSL 3 BASIC7.04□□□□□ -1.28
COL3A1P02461 LINC02257-202ENST00000433576 720 ntTSL 5 BASIC7.04□□□□□ -1.28
COL3A1P02461 AC073062.1-201ENST00000434509 455 ntTSL 5 BASIC7.04□□□□□ -1.28
COL3A1P02461 RPL7P39-201ENST00000481157 744 ntBASIC7.04□□□□□ -1.28
COL3A1P02461 MTND2P31-201ENST00000512602 616 ntBASIC7.04□□□□□ -1.28
COL3A1P02461 AC131953.1-201ENST00000513127 477 ntTSL 2 BASIC7.04□□□□□ -1.28
COL3A1P02461 AC022832.1-201ENST00000530718 645 ntBASIC7.04□□□□□ -1.28
COL3A1P02461 AP001970.1-201ENST00000531681 701 ntTSL 3 BASIC7.04□□□□□ -1.28
COL3A1P02461 AP002373.2-201ENST00000541631 1060 ntBASIC7.04□□□□□ -1.28
COL3A1P02461 AC039056.1-201ENST00000552704 467 ntTSL 3 BASIC7.04□□□□□ -1.28
COL3A1P02461 RNASE9-204ENST00000553541 1136 ntAPPRIS P3 TSL 1 (best) BASIC7.04□□□□□ -1.28
COL3A1P02461 RNASE9-206ENST00000554964 1101 ntAPPRIS P3 TSL 1 (best) BASIC7.04□□□□□ -1.28
COL3A1P02461 RNASE9-208ENST00000556208 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC7.04□□□□□ -1.28
Retrieved 100 of 98,524 protein–RNA pairs in 143.7 ms