Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 CDK12-202ENST00000447079 8336 ntAPPRIS P3 TSL 1 (best) BASIC6.97□□□□□ -1.29
COL18A1P39060 MUC3A-203ENST00000483366 9944 ntAPPRIS ALT2 TSL 5 BASIC6.97□□□□□ -1.29
COL18A1P39060 MCM10-201ENST00000378694 4587 ntTSL 5 BASIC6.97□□□□□ -1.29
COL18A1P39060 ZCCHC2-204ENST00000586834 4765 ntAPPRIS ALT2 TSL 1 (best) BASIC6.97□□□□□ -1.29
COL18A1P39060 ZNF23-204ENST00000428724 1932 ntAPPRIS P3 TSL 1 (best) BASIC6.97□□□□□ -1.29
COL18A1P39060 ETV1-201ENST00000242066 6348 ntTSL 5 BASIC6.96□□□□□ -1.29
COL18A1P39060 GALK2-201ENST00000327171 5299 ntTSL 1 (best) BASIC6.96□□□□□ -1.29
COL18A1P39060 TRPM8-201ENST00000324695 5621 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.29
COL18A1P39060 ZFP42-201ENST00000326866 2651 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.3
COL18A1P39060 SLAMF6-203ENST00000368059 2743 ntAPPRIS P3 TSL 1 (best) BASIC6.96□□□□□ -1.3
COL18A1P39060 TSPAN8-202ENST00000393330 1516 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.3
COL18A1P39060 AP002530.1-201ENST00000405705 684 ntBASIC6.96□□□□□ -1.3
COL18A1P39060 AC104162.1-201ENST00000430831 2382 ntBASIC6.96□□□□□ -1.3
COL18A1P39060 LINC02532-206ENST00000433965 570 ntTSL 2 BASIC6.96□□□□□ -1.3
COL18A1P39060 PINCR-201ENST00000440955 2228 ntTSL 2 BASIC6.96□□□□□ -1.3
COL18A1P39060 RPL5P25-201ENST00000441148 775 ntBASIC6.96□□□□□ -1.3
COL18A1P39060 LINC00380-201ENST00000442478 353 ntTSL 2 BASIC6.96□□□□□ -1.3
COL18A1P39060 PPP4R1L-209ENST00000497138 4680 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
COL18A1P39060 BDNF-AS-202ENST00000499568 2039 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
COL18A1P39060 UGT2B24P-201ENST00000514441 1597 ntBASIC6.96□□□□□ -1.3
COL18A1P39060 ZFHX4-204ENST00000518282 12175 ntAPPRIS ALT2 TSL 5 BASIC6.96□□□□□ -1.3
COL18A1P39060 MSC-AS1-205ENST00000519068 569 ntTSL 3 BASIC6.96□□□□□ -1.3
COL18A1P39060 MIR4307HG-201ENST00000548170 822 ntTSL 3 BASIC6.96□□□□□ -1.3
COL18A1P39060 BLOC1S6-209ENST00000565409 616 ntTSL 4 BASIC6.96□□□□□ -1.3
COL18A1P39060 AL158152.1-201ENST00000602652 1435 ntBASIC6.96□□□□□ -1.3
COL18A1P39060 CCL4L2-215ENST00000620055 537 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
COL18A1P39060 CCL4L2-217ENST00000620250 667 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.3
COL18A1P39060 CCL4-203ENST00000621626 552 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
COL18A1P39060 AC005225.5-201ENST00000623547 2225 ntBASIC6.96□□□□□ -1.3
COL18A1P39060 ZNRD1ASP-221ENST00000637794 1074 ntBASIC6.96□□□□□ -1.3
COL18A1P39060 RBMS2-201ENST00000262031 8382 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.3
COL18A1P39060 CRYBG3-201ENST00000389622 10729 ntAPPRIS P1 TSL 5 BASIC6.96□□□□□ -1.3
COL18A1P39060 MCM9-209ENST00000619706 4822 ntAPPRIS P1 TSL 5 BASIC6.96□□□□□ -1.3
COL18A1P39060 CLASP2-225ENST00000635664 4176 ntTSL 5 BASIC6.96□□□□□ -1.3
COL18A1P39060 ZNF615-201ENST00000376716 4048 ntAPPRIS P3 TSL 2 BASIC6.96□□□□□ -1.3
COL18A1P39060 PBX1-221ENST00000612123 6062 ntTSL 5 BASIC6.96□□□□□ -1.3
COL18A1P39060 ASAH1-232ENST00000636691 2472 ntTSL 5 BASIC6.96□□□□□ -1.3
COL18A1P39060 ITPR1-203ENST00000357086 9762 ntAPPRIS P3 TSL 1 (best) BASIC6.96□□□□□ -1.3
COL18A1P39060 SMARCE1-208ENST00000474246 2124 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
COL18A1P39060 ACSL5-202ENST00000354655 3351 ntAPPRIS P1 TSL 2 BASIC6.96□□□□□ -1.3
COL18A1P39060 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
COL18A1P39060 HSDL2-201ENST00000398803 2983 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
COL18A1P39060 OR2D2-201ENST00000299459 1110 ntAPPRIS P1 BASIC6.95□□□□□ -1.3
COL18A1P39060 RNA5SP113-201ENST00000410486 84 ntBASIC6.95□□□□□ -1.3
COL18A1P39060 RN7SKP100-201ENST00000411258 284 ntBASIC6.95□□□□□ -1.3
COL18A1P39060 CHEK2P3-201ENST00000416118 248 ntBASIC6.95□□□□□ -1.3
COL18A1P39060 AL158154.1-201ENST00000427387 465 ntTSL 3 BASIC6.95□□□□□ -1.3
COL18A1P39060 TPT1P12-201ENST00000448968 492 ntBASIC6.95□□□□□ -1.3
COL18A1P39060 AL445524.1-204ENST00000454631 458 ntTSL 3 BASIC6.95□□□□□ -1.3
COL18A1P39060 AC073218.1-201ENST00000458413 171 ntTSL 5 BASIC6.95□□□□□ -1.3
COL18A1P39060 AC079168.1-201ENST00000458741 345 ntBASIC6.95□□□□□ -1.3
COL18A1P39060 RPL23AP72-201ENST00000492447 435 ntBASIC6.95□□□□□ -1.3
COL18A1P39060 GAPDHP56-201ENST00000506031 988 ntBASIC6.95□□□□□ -1.3
COL18A1P39060 AC006427.1-201ENST00000514359 712 ntBASIC6.95□□□□□ -1.3
COL18A1P39060 AC083923.2-201ENST00000519880 574 ntTSL 4 BASIC6.95□□□□□ -1.3
COL18A1P39060 EDDM3DP-201ENST00000554692 434 ntBASIC6.95□□□□□ -1.3
COL18A1P39060 TRAV30-201ENST00000557168 337 ntAPPRIS P1 BASIC6.95□□□□□ -1.3
COL18A1P39060 AGBL1-AS1-203ENST00000566878 865 ntTSL 3 BASIC6.95□□□□□ -1.3
COL18A1P39060 SETSIP-202ENST00000596516 909 ntAPPRIS P2 BASIC6.95□□□□□ -1.3
COL18A1P39060 DTNA-232ENST00000599844 853 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
COL18A1P39060 AL391358.1-201ENST00000605342 190 ntBASIC6.95□□□□□ -1.3
COL18A1P39060 AC083809.1-201ENST00000615051 472 ntBASIC6.95□□□□□ -1.3
COL18A1P39060 KLC1-204ENST00000348520 15091 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
COL18A1P39060 MOB1B-201ENST00000309395 6963 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
COL18A1P39060 ITPR1-202ENST00000354582 10242 ntTSL 5 BASIC6.95□□□□□ -1.3
COL18A1P39060 PSD3-219ENST00000614430 6136 ntTSL 5 BASIC6.95□□□□□ -1.3
COL18A1P39060 METTL8-217ENST00000612742 8132 ntAPPRIS P1 TSL 2 BASIC6.95□□□□□ -1.3
COL18A1P39060 ENTPD1-201ENST00000371205 2035 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
COL18A1P39060 KIAA0100-201ENST00000389003 6852 ntAPPRIS ALT2 TSL 5 BASIC6.95□□□□□ -1.3
COL18A1P39060 GRIP1-202ENST00000398016 4888 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
COL18A1P39060 PTK2-207ENST00000517887 4661 ntTSL 5 BASIC6.95□□□□□ -1.3
COL18A1P39060 TEDDM1-201ENST00000367565 2500 ntAPPRIS P1 BASIC6.95□□□□□ -1.3
COL18A1P39060 TOGARAM2-201ENST00000379558 12691 ntAPPRIS P1 TSL 5 BASIC6.95□□□□□ -1.3
COL18A1P39060 RBM12-203ENST00000374114 6662 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
COL18A1P39060 CLCC1-204ENST00000369968 4151 ntTSL 5 BASIC6.95□□□□□ -1.3
COL18A1P39060 LINC01317-201ENST00000366209 779 ntTSL 5 BASIC6.95□□□□□ -1.3
COL18A1P39060 PPIAP9-201ENST00000403866 498 ntBASIC6.95□□□□□ -1.3
COL18A1P39060 REG1CP-206ENST00000447469 496 ntBASIC6.95□□□□□ -1.3
COL18A1P39060 AC005674.1-201ENST00000503493 459 ntTSL 3 BASIC6.95□□□□□ -1.3
COL18A1P39060 AC027667.1-201ENST00000545814 304 ntBASIC6.95□□□□□ -1.3
COL18A1P39060 AC015845.2-201ENST00000581805 472 ntTSL 2 BASIC6.95□□□□□ -1.3
COL18A1P39060 OR52K1-202ENST00000641528 5456 ntAPPRIS P1 BASIC6.95□□□□□ -1.3
COL18A1P39060 ALCAM-205ENST00000472644 4189 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
COL18A1P39060 SLC7A2-202ENST00000398090 7557 ntAPPRIS P3 TSL 1 (best) BASIC6.94□□□□□ -1.3
COL18A1P39060 GABRQ-201ENST00000598523 6172 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
COL18A1P39060 KIAA0586-201ENST00000261244 4807 ntAPPRIS P3 TSL 1 (best) BASIC6.94□□□□□ -1.3
COL18A1P39060 LRRC37A16P-202ENST00000586022 3725 ntBASIC6.94□□□□□ -1.3
COL18A1P39060 GAPT-202ENST00000396776 3016 ntAPPRIS P1 TSL 2 BASIC6.94□□□□□ -1.3
COL18A1P39060 NCOA7-201ENST00000229634 2998 ntAPPRIS ALT2 TSL 2 BASIC6.94□□□□□ -1.3
COL18A1P39060 IRAK4-203ENST00000448290 1381 ntTSL 5 BASIC6.94□□□□□ -1.3
COL18A1P39060 AC008124.1-201ENST00000609803 9730 ntBASIC6.94□□□□□ -1.3
COL18A1P39060 IPO11-203ENST00000409534 1725 ntTSL 2 BASIC6.94□□□□□ -1.3
COL18A1P39060 U3.28-201ENST00000391249 210 ntBASIC6.94□□□□□ -1.3
COL18A1P39060 AC026316.2-201ENST00000473110 263 ntTSL 3 BASIC6.94□□□□□ -1.3
COL18A1P39060 STRADBP1-201ENST00000478954 1281 ntBASIC6.94□□□□□ -1.3
COL18A1P39060 AC120193.1-201ENST00000518988 741 ntTSL 2 BASIC6.94□□□□□ -1.3
COL18A1P39060 AL139022.1-201ENST00000556127 486 ntTSL 5 BASIC6.94□□□□□ -1.3
COL18A1P39060 AC091117.1-201ENST00000560967 426 ntTSL 5 BASIC6.94□□□□□ -1.3
COL18A1P39060 NQO1-206ENST00000564043 892 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
COL18A1P39060 AC108738.1-201ENST00000603703 237 ntBASIC6.94□□□□□ -1.3
Retrieved 100 of 98,524 protein–RNA pairs in 158.3 ms