Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC092646.1-201ENST00000427142 901 ntBASIC6.03□□□□□ -1.44
MSX2P35548 LINC00266-4P-201ENST00000427373 842 ntTSL 3 BASIC6.03□□□□□ -1.44
MSX2P35548 BX119321.1-201ENST00000428912 797 ntBASIC6.03□□□□□ -1.44
MSX2P35548 AL122010.1-201ENST00000429293 720 ntTSL 2 BASIC6.03□□□□□ -1.44
MSX2P35548 DLGAP5P1-201ENST00000430307 464 ntBASIC6.03□□□□□ -1.44
MSX2P35548 BBIP1-205ENST00000436562 383 ntAPPRIS P1 TSL 3 BASIC6.03□□□□□ -1.44
MSX2P35548 AL159174.1-201ENST00000438267 811 ntTSL 3 BASIC6.03□□□□□ -1.44
MSX2P35548 AC000041.1-201ENST00000439655 175 ntBASIC6.03□□□□□ -1.44
MSX2P35548 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC6.03□□□□□ -1.44
MSX2P35548 NPM1P49-201ENST00000448027 714 ntBASIC6.03□□□□□ -1.44
MSX2P35548 MYO5BP2-201ENST00000449815 1277 ntBASIC6.03□□□□□ -1.44
MSX2P35548 MTCO2P18-201ENST00000457151 658 ntBASIC6.03□□□□□ -1.44
MSX2P35548 AC016822.1-201ENST00000457975 439 ntTSL 3 BASIC6.03□□□□□ -1.44
MSX2P35548 LINC01445-202ENST00000458615 679 ntTSL 2 BASIC6.03□□□□□ -1.44
MSX2P35548 STRADBP1-201ENST00000478954 1281 ntBASIC6.03□□□□□ -1.44
MSX2P35548 RN7SL37P-201ENST00000490461 307 ntBASIC6.03□□□□□ -1.44
MSX2P35548 PFN2-213ENST00000494827 793 ntTSL 4 BASIC6.03□□□□□ -1.44
MSX2P35548 TECRP2-201ENST00000503270 928 ntBASIC6.03□□□□□ -1.44
MSX2P35548 MGST2-204ENST00000506797 634 ntTSL 2 BASIC6.03□□□□□ -1.44
MSX2P35548 LINC01091-201ENST00000508111 645 ntTSL 5 BASIC6.03□□□□□ -1.44
MSX2P35548 AC095052.1-201ENST00000509955 863 ntBASIC6.03□□□□□ -1.44
MSX2P35548 AL390198.2-201ENST00000510553 222 ntBASIC6.03□□□□□ -1.44
MSX2P35548 AC133963.2-201ENST00000513686 578 ntBASIC6.03□□□□□ -1.44
MSX2P35548 AC093599.1-201ENST00000515232 562 ntTSL 4 BASIC6.03□□□□□ -1.44
MSX2P35548 RNA5SP75-201ENST00000516841 111 ntBASIC6.03□□□□□ -1.44
MSX2P35548 AC110011.1-201ENST00000518260 582 ntTSL 3 BASIC6.03□□□□□ -1.44
MSX2P35548 IGKV1D-22-201ENST00000518953 324 ntBASIC6.03□□□□□ -1.44
MSX2P35548 AP002954.1-201ENST00000526274 425 ntTSL 3 BASIC6.03□□□□□ -1.44
MSX2P35548 AP003086.3-201ENST00000527030 365 ntTSL 3 BASIC6.03□□□□□ -1.44
MSX2P35548 OR4C1P-201ENST00000530880 937 ntBASIC6.03□□□□□ -1.44
MSX2P35548 AP002815.1-201ENST00000533740 386 ntTSL 3 BASIC6.03□□□□□ -1.44
MSX2P35548 CA1-224ENST00000542576 1236 ntAPPRIS P1 TSL 5 BASIC6.03□□□□□ -1.44
MSX2P35548 OR9A4-201ENST00000548136 1093 ntAPPRIS P1 BASIC6.03□□□□□ -1.44
MSX2P35548 AC023161.2-201ENST00000551218 780 ntBASIC6.03□□□□□ -1.44
MSX2P35548 TMEM202-202ENST00000567679 588 ntAPPRIS ALT2 TSL 2 BASIC6.03□□□□□ -1.44
MSX2P35548 AC009054.1-201ENST00000568140 427 ntTSL 3 BASIC6.03□□□□□ -1.44
MSX2P35548 RN7SL689P-201ENST00000577215 297 ntBASIC6.03□□□□□ -1.44
MSX2P35548 DPRXP4-201ENST00000578053 568 ntBASIC6.03□□□□□ -1.44
MSX2P35548 FCGR1CP-201ENST00000579737 1127 ntBASIC6.03□□□□□ -1.44
MSX2P35548 TTN-AS1-232ENST00000589487 1077 ntTSL 5 BASIC6.03□□□□□ -1.44
MSX2P35548 AC092296.3-201ENST00000589968 249 ntTSL 3 BASIC6.03□□□□□ -1.44
MSX2P35548 ZNF43-209ENST00000598288 560 ntTSL 4 BASIC6.03□□□□□ -1.44
MSX2P35548 FXYD6P1-201ENST00000604857 285 ntBASIC6.03□□□□□ -1.44
MSX2P35548 AC023206.1-201ENST00000605824 298 ntBASIC6.03□□□□□ -1.44
MSX2P35548 AC104073.3-201ENST00000610942 955 ntBASIC6.03□□□□□ -1.44
MSX2P35548 BMS1P14-201ENST00000615056 606 ntTSL 5 BASIC6.03□□□□□ -1.44
MSX2P35548 Metazoa_SRP.81-201ENST00000618466 316 ntBASIC6.03□□□□□ -1.44
MSX2P35548 ALKAL2-208ENST00000619265 496 ntTSL 2 BASIC6.03□□□□□ -1.44
MSX2P35548 AL121895.2-201ENST00000619558 447 ntBASIC6.03□□□□□ -1.44
MSX2P35548 AC005858.3-201ENST00000624756 589 ntBASIC6.03□□□□□ -1.44
MSX2P35548 HBG1-202ENST00000632727 369 ntTSL 3 BASIC6.03□□□□□ -1.44
MSX2P35548 AL355306.2-208ENST00000634868 1251 ntTSL 5 BASIC6.03□□□□□ -1.44
MSX2P35548 GYPA-212ENST00000616983 2538 ntAPPRIS ALT2 TSL 5 BASIC6.03□□□□□ -1.44
MSX2P35548 PTPN3-202ENST00000374541 6703 ntAPPRIS P1 TSL 5 BASIC6.03□□□□□ -1.44
MSX2P35548 NXPE4-202ENST00000424261 1687 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
MSX2P35548 CYP3A43-203ENST00000342499 1396 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
MSX2P35548 LRRC37A15P-201ENST00000514785 1355 ntBASIC6.03□□□□□ -1.44
MSX2P35548 AC096921.2-201ENST00000561507 1916 ntBASIC6.03□□□□□ -1.44
MSX2P35548 SOHLH2-202ENST00000379881 2193 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
MSX2P35548 MACF1-232ENST00000567887 24319 ntAPPRIS P5 TSL 5 BASIC6.03□□□□□ -1.44
MSX2P35548 YES1P1-201ENST00000418510 1628 ntBASIC6.03□□□□□ -1.44
MSX2P35548 AL513550.1-201ENST00000418945 1638 ntTSL 2 BASIC6.03□□□□□ -1.44
MSX2P35548 ZFYVE9-202ENST00000357206 4567 ntAPPRIS ALT1 TSL 1 (best) BASIC6.03□□□□□ -1.44
MSX2P35548 TMEM217-202ENST00000356757 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC6.02□□□□□ -1.44
MSX2P35548 HDAC9-203ENST00000406072 4102 ntTSL 5 BASIC6.02□□□□□ -1.45
MSX2P35548 TLR6-201ENST00000381950 2938 ntAPPRIS P1 BASIC6.02□□□□□ -1.45
MSX2P35548 IGF2BP3-218ENST00000619562 2126 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
MSX2P35548 DDX18P5-201ENST00000534547 1306 ntBASIC6.02□□□□□ -1.45
MSX2P35548 GHR-211ENST00000618088 4491 ntAPPRIS P1 TSL 5 BASIC6.02□□□□□ -1.45
MSX2P35548 MTTP-203ENST00000457717 4092 ntAPPRIS P1 TSL 5 BASIC6.02□□□□□ -1.45
MSX2P35548 KCNMB2-210ENST00000617329 2214 ntTSL 2 BASIC6.02□□□□□ -1.45
MSX2P35548 MMP13-201ENST00000260302 2716 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
MSX2P35548 ZBTB25-201ENST00000394715 2094 ntAPPRIS P1 TSL 2 BASIC6.02□□□□□ -1.45
MSX2P35548 ATG12-202ENST00000500945 1430 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
MSX2P35548 ADAM18-206ENST00000520772 1429 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
MSX2P35548 OR10G4-202ENST00000641521 3623 ntAPPRIS P1 BASIC6.02□□□□□ -1.45
MSX2P35548 OR10AB1P-202ENST00000641219 1686 ntBASIC6.02□□□□□ -1.45
MSX2P35548 FOXP2-203ENST00000378237 2187 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
MSX2P35548 METTL5-202ENST00000308099 629 ntTSL 3 BASIC6.02□□□□□ -1.45
MSX2P35548 OR13F1-201ENST00000334726 960 ntAPPRIS P1 BASIC6.02□□□□□ -1.45
MSX2P35548 RNU5B-1-201ENST00000363286 116 ntBASIC6.02□□□□□ -1.45
MSX2P35548 RNU4-92P-201ENST00000363783 136 ntBASIC6.02□□□□□ -1.45
MSX2P35548 C1orf105-201ENST00000367725 888 ntTSL 2 BASIC6.02□□□□□ -1.45
MSX2P35548 PRR9-201ENST00000368744 1229 ntAPPRIS P1 TSL 5 BASIC6.02□□□□□ -1.45
MSX2P35548 ATP6V1E1-203ENST00000399798 994 ntTSL 2 BASIC6.02□□□□□ -1.45
MSX2P35548 AL136310.1-201ENST00000404926 654 ntBASIC6.02□□□□□ -1.45
MSX2P35548 FCF1P5-201ENST00000406490 482 ntBASIC6.02□□□□□ -1.45
MSX2P35548 AL136100.1-201ENST00000407696 330 ntBASIC6.02□□□□□ -1.45
MSX2P35548 AC245060.4-201ENST00000413293 1121 ntBASIC6.02□□□□□ -1.45
MSX2P35548 AC005062.1-204ENST00000415499 743 ntTSL 3 BASIC6.02□□□□□ -1.45
MSX2P35548 AL359092.1-201ENST00000417156 265 ntBASIC6.02□□□□□ -1.45
MSX2P35548 AC104389.1-201ENST00000418080 522 ntTSL 3 BASIC6.02□□□□□ -1.45
MSX2P35548 OFD1P11Y-201ENST00000418213 1177 ntBASIC6.02□□□□□ -1.45
MSX2P35548 CLIC4P3-201ENST00000422221 752 ntBASIC6.02□□□□□ -1.45
MSX2P35548 PRKG1-AS1-202ENST00000426785 1111 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
MSX2P35548 AC064852.1-201ENST00000427571 851 ntTSL 3 BASIC6.02□□□□□ -1.45
MSX2P35548 AC007403.1-201ENST00000427579 567 ntTSL 4 BASIC6.02□□□□□ -1.45
MSX2P35548 AC016766.1-201ENST00000429636 714 ntTSL 3 BASIC6.02□□□□□ -1.45
MSX2P35548 AL353768.1-201ENST00000439872 487 ntTSL 3 BASIC6.02□□□□□ -1.45
MSX2P35548 AC027124.1-201ENST00000440852 466 ntBASIC6.02□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 70.6 ms