Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 AC092168.2-201ENST00000430586 717 ntTSL 3 BASIC5.84□□□□□ -1.47
HOXA9P31269 AL390879.1-201ENST00000439143 386 ntBASIC5.84□□□□□ -1.47
HOXA9P31269 AC092106.1-201ENST00000444291 373 ntBASIC5.84□□□□□ -1.47
HOXA9P31269 AC079117.1-201ENST00000445178 1000 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
HOXA9P31269 snoU13.29-201ENST00000459370 104 ntBASIC5.84□□□□□ -1.47
HOXA9P31269 RSRC1-207ENST00000475278 1195 ntTSL 5 BASIC5.84□□□□□ -1.47
HOXA9P31269 COX6B1P2-201ENST00000489624 230 ntBASIC5.84□□□□□ -1.47
HOXA9P31269 CSNK1A1P3-201ENST00000504105 330 ntBASIC5.84□□□□□ -1.47
HOXA9P31269 AC008575.1-201ENST00000520401 694 ntAPPRIS P1 TSL 3 BASIC5.84□□□□□ -1.47
HOXA9P31269 AP006259.1-201ENST00000528520 561 ntTSL 2 BASIC5.84□□□□□ -1.47
HOXA9P31269 LINC01619-209ENST00000552277 571 ntTSL 4 BASIC5.84□□□□□ -1.47
HOXA9P31269 AC090518.1-202ENST00000568246 578 ntTSL 4 BASIC5.84□□□□□ -1.47
HOXA9P31269 AC024267.4-201ENST00000580782 683 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
HOXA9P31269 AC105265.3-202ENST00000610188 459 ntTSL 5 BASIC5.84□□□□□ -1.47
HOXA9P31269 AC126915.2-201ENST00000610957 190 ntBASIC5.84□□□□□ -1.47
HOXA9P31269 OR52B4-201ENST00000624801 1124 ntAPPRIS P1 BASIC5.84□□□□□ -1.47
HOXA9P31269 ZNF782-208ENST00000535338 3296 ntAPPRIS P1 TSL 3 BASIC5.84□□□□□ -1.47
HOXA9P31269 AQP4-201ENST00000383168 5274 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
HOXA9P31269 FAM205A-201ENST00000378788 4225 ntAPPRIS P1 TSL 2 BASIC5.84□□□□□ -1.47
HOXA9P31269 AC022164.1-201ENST00000568767 2673 ntBASIC5.84□□□□□ -1.47
HOXA9P31269 ADGRF1-203ENST00000371253 5468 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
HOXA9P31269 DCN-202ENST00000393155 2133 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
HOXA9P31269 PCAT19-201ENST00000588495 3472 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
HOXA9P31269 AL137141.1-201ENST00000624622 4836 ntBASIC5.84□□□□□ -1.47
HOXA9P31269 AL449283.1-201ENST00000602631 3403 ntBASIC5.84□□□□□ -1.48
HOXA9P31269 LINC01422-201ENST00000434868 6043 ntTSL 1 (best) BASIC5.84□□□□□ -1.48
HOXA9P31269 SLC12A6-218ENST00000560611 4239 ntAPPRIS ALT1 TSL 1 (best) BASIC5.84□□□□□ -1.48
HOXA9P31269 CFAP47-202ENST00000313548 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC5.84□□□□□ -1.48
HOXA9P31269 MAPK10-370ENST00000641943 4117 ntAPPRIS P2 BASIC5.84□□□□□ -1.48
HOXA9P31269 ESRRG-205ENST00000366937 5365 ntTSL 1 (best) BASIC5.84□□□□□ -1.48
HOXA9P31269 SYNJ2BP-201ENST00000256366 7015 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.48
HOXA9P31269 AC099506.1-201ENST00000567359 4037 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
HOXA9P31269 SLAMF6-202ENST00000368057 2712 ntAPPRIS ALT2 TSL 1 (best) BASIC5.83□□□□□ -1.48
HOXA9P31269 RAPH1-209ENST00000439222 1854 ntAPPRIS ALT2 TSL 5 BASIC5.83□□□□□ -1.48
HOXA9P31269 NAT1-203ENST00000517492 2280 ntAPPRIS P1 TSL 2 BASIC5.83□□□□□ -1.48
HOXA9P31269 DCAF8L1-201ENST00000441525 3457 ntAPPRIS P1 BASIC5.83□□□□□ -1.48
HOXA9P31269 PCDH15-202ENST00000361849 7017 ntTSL 5 BASIC5.83□□□□□ -1.48
HOXA9P31269 PCDH15-205ENST00000373957 7032 ntTSL 5 BASIC5.83□□□□□ -1.48
HOXA9P31269 TGIF1-204ENST00000400167 1352 ntTSL 3 BASIC5.83□□□□□ -1.48
HOXA9P31269 HMMR-203ENST00000393915 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC5.83□□□□□ -1.48
HOXA9P31269 AL353740.1-201ENST00000366253 575 ntTSL 2 BASIC5.83□□□□□ -1.48
HOXA9P31269 APOOL-201ENST00000373173 1279 ntAPPRIS P2 TSL 1 (best) BASIC5.83□□□□□ -1.48
HOXA9P31269 RN7SKP125-201ENST00000410481 302 ntBASIC5.83□□□□□ -1.48
HOXA9P31269 GNG12-AS1-202ENST00000414904 796 ntTSL 3 BASIC5.83□□□□□ -1.48
HOXA9P31269 DPPA2P2-201ENST00000418220 897 ntBASIC5.83□□□□□ -1.48
HOXA9P31269 PRUNEP1-201ENST00000425846 705 ntBASIC5.83□□□□□ -1.48
HOXA9P31269 TSSK4-203ENST00000428351 576 ntTSL 2 BASIC5.83□□□□□ -1.48
HOXA9P31269 AC099654.1-201ENST00000442649 407 ntTSL 3 BASIC5.83□□□□□ -1.48
HOXA9P31269 AL137005.1-201ENST00000452944 719 ntTSL 5 BASIC5.83□□□□□ -1.48
HOXA9P31269 AC073130.1-202ENST00000454897 587 ntTSL 2 BASIC5.83□□□□□ -1.48
HOXA9P31269 AC147055.3-201ENST00000510547 851 ntBASIC5.83□□□□□ -1.48
HOXA9P31269 snoU109.5-201ENST00000516231 132 ntBASIC5.83□□□□□ -1.48
HOXA9P31269 AC079296.1-202ENST00000521394 960 ntTSL 4 BASIC5.83□□□□□ -1.48
HOXA9P31269 AP002370.2-202ENST00000533669 908 ntTSL 5 BASIC5.83□□□□□ -1.48
HOXA9P31269 AC139697.1-201ENST00000548429 745 ntBASIC5.83□□□□□ -1.48
HOXA9P31269 AP005209.1-201ENST00000582531 928 ntTSL 5 BASIC5.83□□□□□ -1.48
HOXA9P31269 AC004448.4-204ENST00000585389 743 ntTSL 5 BASIC5.83□□□□□ -1.48
HOXA9P31269 TMSB15B-207ENST00000598087 947 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
HOXA9P31269 LAMTOR5-AS1-233ENST00000625451 470 ntTSL 5 BASIC5.83□□□□□ -1.48
HOXA9P31269 AL513550.1-201ENST00000418945 1638 ntTSL 2 BASIC5.83□□□□□ -1.48
HOXA9P31269 LRRC37A3-204ENST00000400877 3273 ntTSL 2 BASIC5.83□□□□□ -1.48
HOXA9P31269 CASP10-202ENST00000286186 5928 ntAPPRIS P4 TSL 1 (best) BASIC5.83□□□□□ -1.48
HOXA9P31269 AF127577.4-201ENST00000432230 5929 ntTSL 5 BASIC5.83□□□□□ -1.48
HOXA9P31269 SON-204ENST00000381692 2463 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
HOXA9P31269 LRRC36-202ENST00000435835 1765 ntTSL 2 BASIC5.83□□□□□ -1.48
HOXA9P31269 FCHO2-207ENST00000512348 2700 ntTSL 2 BASIC5.83□□□□□ -1.48
HOXA9P31269 GRAMD2B-202ENST00000502348 1363 ntTSL 2 BASIC5.82□□□□□ -1.48
HOXA9P31269 TNFSF4-201ENST00000281834 3470 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
HOXA9P31269 TCF4-268ENST00000629387 3789 ntAPPRIS ALT1 TSL 5 BASIC5.82□□□□□ -1.48
HOXA9P31269 LRRC8B-201ENST00000330947 7593 ntAPPRIS P1 TSL 5 BASIC5.82□□□□□ -1.48
HOXA9P31269 MEIOB-205ENST00000470044 1857 ntTSL 2 BASIC5.82□□□□□ -1.48
HOXA9P31269 EAF2-201ENST00000273668 992 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
HOXA9P31269 MIR133B-201ENST00000362210 119 ntBASIC5.82□□□□□ -1.48
HOXA9P31269 CENPW-203ENST00000368328 750 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
HOXA9P31269 RNA5SP91-201ENST00000390902 119 ntBASIC5.82□□□□□ -1.48
HOXA9P31269 AL009179.1-201ENST00000406085 265 ntBASIC5.82□□□□□ -1.48
HOXA9P31269 AC025946.1-201ENST00000413286 430 ntTSL 3 BASIC5.82□□□□□ -1.48
HOXA9P31269 AL157834.1-201ENST00000422744 420 ntTSL 3 BASIC5.82□□□□□ -1.48
HOXA9P31269 DSTNP5-201ENST00000427921 523 ntBASIC5.82□□□□□ -1.48
HOXA9P31269 Z82246.1-201ENST00000428201 457 ntTSL 2 BASIC5.82□□□□□ -1.48
HOXA9P31269 AL049749.1-201ENST00000430281 632 ntTSL 2 BASIC5.82□□□□□ -1.48
HOXA9P31269 LINC01789-201ENST00000443123 860 ntTSL 5 BASIC5.82□□□□□ -1.48
HOXA9P31269 AL596266.1-201ENST00000448132 400 ntBASIC5.82□□□□□ -1.48
HOXA9P31269 OTX2P1-201ENST00000450956 354 ntBASIC5.82□□□□□ -1.48
HOXA9P31269 AURKAPS1-201ENST00000451805 1212 ntBASIC5.82□□□□□ -1.48
HOXA9P31269 RPL7AP6-201ENST00000477943 801 ntBASIC5.82□□□□□ -1.48
HOXA9P31269 RPSAP50-201ENST00000481955 852 ntBASIC5.82□□□□□ -1.48
HOXA9P31269 RPS7P6-201ENST00000485777 579 ntBASIC5.82□□□□□ -1.48
HOXA9P31269 RPS26P24-201ENST00000497656 331 ntBASIC5.82□□□□□ -1.48
HOXA9P31269 AC024132.2-201ENST00000506878 482 ntTSL 3 BASIC5.82□□□□□ -1.48
HOXA9P31269 LINC01493-201ENST00000530102 460 ntTSL 5 BASIC5.82□□□□□ -1.48
HOXA9P31269 SNHG1-204ENST00000537068 629 ntTSL 5 BASIC5.82□□□□□ -1.48
HOXA9P31269 AL121790.1-201ENST00000554829 738 ntTSL 3 BASIC5.82□□□□□ -1.48
HOXA9P31269 AC020659.1-204ENST00000562920 400 ntTSL 3 BASIC5.82□□□□□ -1.48
HOXA9P31269 AC055855.3-201ENST00000564269 578 ntTSL 2 BASIC5.82□□□□□ -1.48
HOXA9P31269 H3F3BP2-201ENST00000583907 357 ntBASIC5.82□□□□□ -1.48
HOXA9P31269 AC104365.1-202ENST00000587080 398 ntTSL 3 BASIC5.82□□□□□ -1.48
HOXA9P31269 SMIM24-204ENST00000591708 660 ntAPPRIS ALT2 TSL 2 BASIC5.82□□□□□ -1.48
HOXA9P31269 SERPINB10-204ENST00000619595 1194 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
HOXA9P31269 SPATA1-206ENST00000490879 2888 ntAPPRIS P1 TSL 5 BASIC5.82□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 77.5 ms