Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 FOXM1-201ENST00000342628 3475 ntTSL 1 (best) BASIC8.25□□□□□ -1.09
COL9A1P20849 ARMC8-215ENST00000471453 2910 ntTSL 2 BASIC8.25□□□□□ -1.09
COL9A1P20849 CAVIN2-201ENST00000304141 3229 ntAPPRIS P1 TSL 1 (best) BASIC8.25□□□□□ -1.09
COL9A1P20849 SPATA31D5P-201ENST00000376459 4784 ntBASIC8.25□□□□□ -1.09
COL9A1P20849 PABPC4L-201ENST00000421491 4944 ntAPPRIS P1 TSL 3 BASIC8.25□□□□□ -1.09
COL9A1P20849 POLD3-201ENST00000263681 3821 ntAPPRIS P1 TSL 1 (best) BASIC8.25□□□□□ -1.09
COL9A1P20849 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC8.25□□□□□ -1.09
COL9A1P20849 RN7SKP171-201ENST00000364417 303 ntBASIC8.25□□□□□ -1.09
COL9A1P20849 Y_RNA.556-201ENST00000384677 113 ntBASIC8.25□□□□□ -1.09
COL9A1P20849 Y_RNA.557-201ENST00000384680 107 ntBASIC8.25□□□□□ -1.09
COL9A1P20849 ATP5E-203ENST00000395663 697 ntAPPRIS P1 TSL 2 BASIC8.25□□□□□ -1.09
COL9A1P20849 AL136116.1-201ENST00000403591 381 ntBASIC8.25□□□□□ -1.09
COL9A1P20849 OFD1P1Y-201ENST00000411756 1225 ntBASIC8.25□□□□□ -1.09
COL9A1P20849 FLJ27354-201ENST00000415584 788 ntTSL 2 BASIC8.25□□□□□ -1.09
COL9A1P20849 TXNDC8-204ENST00000423740 356 ntTSL 1 (best) BASIC8.25□□□□□ -1.09
COL9A1P20849 OR4K3-201ENST00000425829 947 ntAPPRIS P1 BASIC8.25□□□□□ -1.09
COL9A1P20849 HSPE1P16-201ENST00000426640 348 ntBASIC8.25□□□□□ -1.09
COL9A1P20849 SDAD1P3-201ENST00000427380 333 ntBASIC8.25□□□□□ -1.09
COL9A1P20849 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC8.25□□□□□ -1.09
COL9A1P20849 RPEP4-201ENST00000437636 602 ntBASIC8.25□□□□□ -1.09
COL9A1P20849 BNIP3P2-201ENST00000441221 577 ntBASIC8.25□□□□□ -1.09
COL9A1P20849 AC114814.1-201ENST00000444926 691 ntTSL 3 BASIC8.25□□□□□ -1.09
COL9A1P20849 AC099786.1-201ENST00000446238 670 ntTSL 1 (best) BASIC8.25□□□□□ -1.09
COL9A1P20849 SLC31A1P1-201ENST00000451221 567 ntBASIC8.25□□□□□ -1.09
COL9A1P20849 AC112495.1-201ENST00000456037 756 ntTSL 5 BASIC8.25□□□□□ -1.09
COL9A1P20849 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC8.25□□□□□ -1.09
COL9A1P20849 SNORA35.1-201ENST00000458908 128 ntBASIC8.25□□□□□ -1.09
COL9A1P20849 AC007547.1-201ENST00000462177 490 ntBASIC8.25□□□□□ -1.09
COL9A1P20849 AC104849.1-201ENST00000462623 405 ntBASIC8.25□□□□□ -1.09
COL9A1P20849 RN7SL414P-201ENST00000469545 294 ntBASIC8.25□□□□□ -1.09
COL9A1P20849 VN1R17P-201ENST00000472048 1090 ntBASIC8.25□□□□□ -1.09
COL9A1P20849 RN7SL418P-201ENST00000473031 287 ntBASIC8.25□□□□□ -1.09
COL9A1P20849 AC017015.1-201ENST00000477387 286 ntBASIC8.25□□□□□ -1.09
COL9A1P20849 IGKV1D-16-201ENST00000492446 378 ntAPPRIS P1 BASIC8.25□□□□□ -1.09
COL9A1P20849 PAQR9-AS1-202ENST00000493825 576 ntTSL 2 BASIC8.25□□□□□ -1.09
COL9A1P20849 AC099499.1-201ENST00000505040 558 ntTSL 3 BASIC8.25□□□□□ -1.09
COL9A1P20849 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC8.25□□□□□ -1.09
COL9A1P20849 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC8.25□□□□□ -1.09
COL9A1P20849 CDV3-208ENST00000511392 554 ntTSL 5 BASIC8.25□□□□□ -1.09
COL9A1P20849 AC091839.1-201ENST00000513087 269 ntBASIC8.25□□□□□ -1.09
COL9A1P20849 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC8.25□□□□□ -1.09
COL9A1P20849 AC011377.1-201ENST00000517708 275 ntTSL 3 BASIC8.25□□□□□ -1.09
COL9A1P20849 IGHV3-75-201ENST00000523951 358 ntBASIC8.25□□□□□ -1.09
COL9A1P20849 AP003100.1-201ENST00000524772 832 ntTSL 3 BASIC8.25□□□□□ -1.09
COL9A1P20849 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC8.25□□□□□ -1.09
COL9A1P20849 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC8.25□□□□□ -1.09
COL9A1P20849 AC089984.3-201ENST00000552838 363 ntBASIC8.25□□□□□ -1.09
COL9A1P20849 FDPSP3-201ENST00000556903 1013 ntBASIC8.25□□□□□ -1.09
COL9A1P20849 AC090287.1-201ENST00000578374 291 ntBASIC8.25□□□□□ -1.09
COL9A1P20849 AL358394.3-202ENST00000599308 832 ntTSL 5 BASIC8.25□□□□□ -1.09
COL9A1P20849 AL133338.2-201ENST00000604292 736 ntBASIC8.25□□□□□ -1.09
COL9A1P20849 RPS28P1-201ENST00000604589 187 ntBASIC8.25□□□□□ -1.09
COL9A1P20849 AC135050.6-202ENST00000613584 392 ntBASIC8.25□□□□□ -1.09
COL9A1P20849 AC244153.1-204ENST00000615582 401 ntTSL 2 BASIC8.25□□□□□ -1.09
COL9A1P20849 AC127070.5-201ENST00000623177 2104 ntBASIC8.25□□□□□ -1.09
COL9A1P20849 UCA1-201ENST00000397381 2299 ntTSL 1 (best) BASIC8.25□□□□□ -1.09
COL9A1P20849 HSD11B1-202ENST00000367027 1405 ntAPPRIS P1 TSL 1 (best) BASIC8.25□□□□□ -1.09
COL9A1P20849 DIAPH3-204ENST00000400320 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC8.25□□□□□ -1.09
COL9A1P20849 LILRA2-201ENST00000251376 4429 ntAPPRIS P3 TSL 1 (best) BASIC8.25□□□□□ -1.09
COL9A1P20849 SOCS5P5-201ENST00000402732 1586 ntBASIC8.25□□□□□ -1.09
COL9A1P20849 ZMYND11-202ENST00000381584 2709 ntTSL 1 (best) BASIC8.25□□□□□ -1.09
COL9A1P20849 ZNF468-201ENST00000243639 4027 ntTSL 1 (best) BASIC8.25□□□□□ -1.09
COL9A1P20849 GLYAT-202ENST00000344743 1735 ntAPPRIS P1 TSL 1 (best) BASIC8.25□□□□□ -1.09
COL9A1P20849 IPO11-203ENST00000409534 1725 ntTSL 2 BASIC8.25□□□□□ -1.09
COL9A1P20849 TYW5-201ENST00000354611 4306 ntAPPRIS P1 TSL 1 (best) BASIC8.25□□□□□ -1.09
COL9A1P20849 LDHA-201ENST00000227157 1887 ntTSL 3 BASIC8.25□□□□□ -1.09
COL9A1P20849 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC8.25□□□□□ -1.09
COL9A1P20849 LGALS8-220ENST00000526634 1852 ntAPPRIS ALT2 TSL 5 BASIC8.25□□□□□ -1.09
COL9A1P20849 RP1-206ENST00000636932 3649 ntTSL 5 BASIC8.25□□□□□ -1.09
COL9A1P20849 LINC02347-201ENST00000397346 2458 ntTSL 1 (best) BASIC8.25□□□□□ -1.09
COL9A1P20849 GALNT15-206ENST00000617544 2775 ntTSL 5 BASIC8.25□□□□□ -1.09
COL9A1P20849 RNASE13-201ENST00000382951 1607 ntAPPRIS P1 TSL 1 (best) BASIC8.25□□□□□ -1.09
COL9A1P20849 PAN2-221ENST00000610546 5301 ntAPPRIS ALT1 TSL 5 BASIC8.25□□□□□ -1.09
COL9A1P20849 AP005058.1-201ENST00000580193 2975 ntBASIC8.25□□□□□ -1.09
COL9A1P20849 EXOC5-211ENST00000621441 10589 ntAPPRIS P1 TSL 1 (best) BASIC8.25□□□□□ -1.09
COL9A1P20849 SNX25-207ENST00000618785 3151 ntTSL 5 BASIC8.24□□□□□ -1.09
COL9A1P20849 IFI16-205ENST00000368132 2704 ntAPPRIS ALT2 TSL 1 (best) BASIC8.24□□□□□ -1.09
COL9A1P20849 ZNF169-203ENST00000480716 2716 ntTSL 1 (best) BASIC8.24□□□□□ -1.09
COL9A1P20849 ZNF225-204ENST00000590612 2404 ntAPPRIS P1 TSL 1 (best) BASIC8.24□□□□□ -1.09
COL9A1P20849 GMPR2-203ENST00000399440 1652 ntAPPRIS P1 TSL 1 (best) BASIC8.24□□□□□ -1.09
COL9A1P20849 CFAP221-215ENST00000598644 1532 ntTSL 2 BASIC8.24□□□□□ -1.09
COL9A1P20849 VDAC3-201ENST00000022615 1355 ntAPPRIS P3 TSL 1 (best) BASIC8.24□□□□□ -1.09
COL9A1P20849 SLC9A6-207ENST00000636092 4697 ntTSL 5 BASIC8.24□□□□□ -1.09
COL9A1P20849 PARP2-201ENST00000250416 1886 ntAPPRIS P3 TSL 1 (best) BASIC8.24□□□□□ -1.09
COL9A1P20849 CPEB1-209ENST00000614918 4882 ntTSL 5 BASIC8.24□□□□□ -1.09
COL9A1P20849 POLE2-206ENST00000554396 1581 ntTSL 1 (best) BASIC8.24□□□□□ -1.09
COL9A1P20849 CACNB2-204ENST00000377315 3461 ntAPPRIS ALT1 TSL 1 (best) BASIC8.24□□□□□ -1.09
COL9A1P20849 NFIB-202ENST00000380924 840 ntTSL 5 BASIC8.24□□□□□ -1.09
COL9A1P20849 SNORD15A-201ENST00000384214 148 ntBASIC8.24□□□□□ -1.09
COL9A1P20849 RNU6-316P-201ENST00000391027 107 ntBASIC8.24□□□□□ -1.09
COL9A1P20849 MS4A3-203ENST00000395032 867 ntTSL 2 BASIC8.24□□□□□ -1.09
COL9A1P20849 AL390316.1-201ENST00000406279 553 ntBASIC8.24□□□□□ -1.09
COL9A1P20849 MAST4-207ENST00000407621 559 ntTSL 2 BASIC8.24□□□□□ -1.09
COL9A1P20849 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC8.24□□□□□ -1.09
COL9A1P20849 RPS12P24-201ENST00000412619 387 ntBASIC8.24□□□□□ -1.09
COL9A1P20849 AC068535.1-201ENST00000416008 471 ntTSL 3 BASIC8.24□□□□□ -1.09
COL9A1P20849 HSPE1P1-201ENST00000421494 318 ntBASIC8.24□□□□□ -1.09
COL9A1P20849 DDX11L10-201ENST00000430178 571 ntBASIC8.24□□□□□ -1.09
COL9A1P20849 AC002504.1-201ENST00000438281 691 ntBASIC8.24□□□□□ -1.09
COL9A1P20849 AMYP1-201ENST00000440059 1023 ntBASIC8.24□□□□□ -1.09
Retrieved 100 of 98,524 protein–RNA pairs in 97.3 ms