Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AC074255.1-201ENST00000511259 501 ntBASIC5.04□□□□□ -1.6
SKA3Q8IX90 AC106894.1-201ENST00000511735 451 ntTSL 5 BASIC5.04□□□□□ -1.6
SKA3Q8IX90 RAD21-204ENST00000518055 896 ntTSL 2 BASIC5.04□□□□□ -1.6
SKA3Q8IX90 OR8A2P-201ENST00000528631 952 ntBASIC5.04□□□□□ -1.6
SKA3Q8IX90 MYBPC1-208ENST00000547405 3834 ntAPPRIS ALT2 TSL 1 (best) BASIC5.04□□□□□ -1.6
SKA3Q8IX90 AC126615.2-201ENST00000553003 515 ntBASIC5.04□□□□□ -1.6
SKA3Q8IX90 LINC00929-203ENST00000556213 713 ntTSL 2 BASIC5.04□□□□□ -1.6
SKA3Q8IX90 FRMD6-AS2-201ENST00000556617 548 ntTSL 4 BASIC5.04□□□□□ -1.6
SKA3Q8IX90 AC068722.1-202ENST00000559600 655 ntTSL 3 BASIC5.04□□□□□ -1.6
SKA3Q8IX90 AC048382.2-201ENST00000560239 492 ntTSL 2 BASIC5.04□□□□□ -1.6
SKA3Q8IX90 AC090970.1-201ENST00000561207 381 ntTSL 5 BASIC5.04□□□□□ -1.6
SKA3Q8IX90 THCAT158-201ENST00000575039 535 ntTSL 5 BASIC5.04□□□□□ -1.6
SKA3Q8IX90 AC008395.1-201ENST00000601752 607 ntTSL 5 BASIC5.04□□□□□ -1.6
SKA3Q8IX90 AC022400.9-201ENST00000623633 273 ntBASIC5.04□□□□□ -1.6
SKA3Q8IX90 PCBP1-AS1-286ENST00000625888 765 ntTSL 5 BASIC5.04□□□□□ -1.6
SKA3Q8IX90 AL391117.1-201ENST00000640003 1186 ntTSL 5 BASIC5.04□□□□□ -1.6
SKA3Q8IX90 SULF1-204ENST00000458141 5551 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SKA3Q8IX90 SYT14P1-202ENST00000600441 1448 ntBASIC5.04□□□□□ -1.6
SKA3Q8IX90 PIGA-206ENST00000542278 3626 ntAPPRIS P1 TSL 5 BASIC5.04□□□□□ -1.6
SKA3Q8IX90 ZNF493-203ENST00000392288 5023 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
SKA3Q8IX90 DOCK9-207ENST00000442173 7643 ntAPPRIS ALT2 TSL 5 BASIC5.04□□□□□ -1.6
SKA3Q8IX90 CD200R1L-204ENST00000488794 1597 ntAPPRIS ALT2 TSL 5 BASIC5.04□□□□□ -1.6
SKA3Q8IX90 AC091305.2-201ENST00000624049 1576 ntBASIC5.04□□□□□ -1.6
SKA3Q8IX90 AC144833.1-201ENST00000567953 4089 ntBASIC5.03□□□□□ -1.6
SKA3Q8IX90 MYO9A-203ENST00000444904 7749 ntAPPRIS P2 TSL 5 BASIC5.03□□□□□ -1.6
SKA3Q8IX90 ATXN2-215ENST00000542287 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC5.03□□□□□ -1.6
SKA3Q8IX90 PHF7-211ENST00000615126 1328 ntTSL 5 BASIC5.03□□□□□ -1.6
SKA3Q8IX90 VPS13C-204ENST00000395898 11012 ntAPPRIS ALT2 TSL 1 (best) BASIC5.03□□□□□ -1.6
SKA3Q8IX90 HSPD1P7-201ENST00000447985 1686 ntBASIC5.03□□□□□ -1.6
SKA3Q8IX90 ZNF107-205ENST00000613690 5589 ntAPPRIS ALT2 TSL 5 BASIC5.03□□□□□ -1.6
SKA3Q8IX90 OR51G2-202ENST00000641926 3326 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
SKA3Q8IX90 RLN1-201ENST00000223862 967 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SKA3Q8IX90 USMG5-201ENST00000309579 364 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SKA3Q8IX90 AL159987.1-201ENST00000347911 293 ntBASIC5.03□□□□□ -1.6
SKA3Q8IX90 TRGV10-201ENST00000390341 512 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
SKA3Q8IX90 TRAV8-7-201ENST00000390456 341 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
SKA3Q8IX90 LSM5-203ENST00000409782 649 ntTSL 5 BASIC5.03□□□□□ -1.6
SKA3Q8IX90 IPPKP1-201ENST00000422501 768 ntBASIC5.03□□□□□ -1.6
SKA3Q8IX90 TEX41-206ENST00000432608 661 ntTSL 3 BASIC5.03□□□□□ -1.6
SKA3Q8IX90 HMGB3P24-201ENST00000433260 622 ntBASIC5.03□□□□□ -1.6
SKA3Q8IX90 LINC01035-201ENST00000445072 784 ntTSL 3 BASIC5.03□□□□□ -1.6
SKA3Q8IX90 AC107072.1-201ENST00000449007 110 ntTSL 3 BASIC5.03□□□□□ -1.6
SKA3Q8IX90 AC019117.1-204ENST00000451792 442 ntTSL 3 BASIC5.03□□□□□ -1.6
SKA3Q8IX90 MEMO1P4-201ENST00000453590 386 ntBASIC5.03□□□□□ -1.6
SKA3Q8IX90 AL122019.1-202ENST00000458070 546 ntTSL 5 BASIC5.03□□□□□ -1.6
SKA3Q8IX90 SH3GLB1-202ENST00000482504 1199 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
SKA3Q8IX90 RN7SL570P-201ENST00000484405 292 ntBASIC5.03□□□□□ -1.6
SKA3Q8IX90 PDCL3P4-201ENST00000489621 720 ntBASIC5.03□□□□□ -1.6
SKA3Q8IX90 LINC00518-204ENST00000491317 1228 ntTSL 2 BASIC5.03□□□□□ -1.6
SKA3Q8IX90 DUTP1-201ENST00000493631 470 ntBASIC5.03□□□□□ -1.6
SKA3Q8IX90 NENFP3-201ENST00000503735 313 ntBASIC5.03□□□□□ -1.6
SKA3Q8IX90 LINC02502-201ENST00000505122 642 ntTSL 4 BASIC5.03□□□□□ -1.6
SKA3Q8IX90 GLUD1P3-202ENST00000508551 200 ntBASIC5.03□□□□□ -1.6
SKA3Q8IX90 B4GALNT2P1-201ENST00000508857 307 ntBASIC5.03□□□□□ -1.6
SKA3Q8IX90 AC008592.4-201ENST00000509999 450 ntTSL 3 BASIC5.03□□□□□ -1.6
SKA3Q8IX90 AC122710.1-201ENST00000510622 553 ntTSL 5 BASIC5.03□□□□□ -1.6
SKA3Q8IX90 LINC02432-203ENST00000511213 719 ntTSL 2 BASIC5.03□□□□□ -1.6
SKA3Q8IX90 SNORA70.20-201ENST00000516848 126 ntBASIC5.03□□□□□ -1.6
SKA3Q8IX90 IGKV2-4-201ENST00000523070 340 ntBASIC5.03□□□□□ -1.6
SKA3Q8IX90 AC090023.2-201ENST00000540875 545 ntTSL 3 BASIC5.03□□□□□ -1.6
SKA3Q8IX90 LSM3P2-201ENST00000551246 273 ntBASIC5.03□□□□□ -1.6
SKA3Q8IX90 AL132800.1-201ENST00000555109 698 ntTSL 5 BASIC5.03□□□□□ -1.6
SKA3Q8IX90 AC074050.3-201ENST00000569175 441 ntTSL 4 BASIC5.03□□□□□ -1.6
SKA3Q8IX90 AC060780.2-201ENST00000589047 198 ntBASIC5.03□□□□□ -1.6
SKA3Q8IX90 HIRAP1-201ENST00000605318 787 ntBASIC5.03□□□□□ -1.6
SKA3Q8IX90 LINC02343-201ENST00000605909 573 ntTSL 4 BASIC5.03□□□□□ -1.6
SKA3Q8IX90 AP005431.1-201ENST00000618479 319 ntBASIC5.03□□□□□ -1.6
SKA3Q8IX90 AC087821.1-201ENST00000623639 567 ntBASIC5.03□□□□□ -1.6
SKA3Q8IX90 AL596218.1-201ENST00000634239 1140 ntTSL 5 BASIC5.03□□□□□ -1.6
SKA3Q8IX90 KBTBD3-201ENST00000526793 3751 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
SKA3Q8IX90 DSC2-201ENST00000251081 4826 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
SKA3Q8IX90 TC2N-203ENST00000435962 5146 ntAPPRIS P1 TSL 2 BASIC5.03□□□□□ -1.6
SKA3Q8IX90 AC019072.1-201ENST00000604535 1551 ntBASIC5.03□□□□□ -1.6
SKA3Q8IX90 TESPA1-203ENST00000524622 4188 ntAPPRIS ALT2 TSL 1 (best) BASIC5.03□□□□□ -1.6
SKA3Q8IX90 C3orf35-203ENST00000425564 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC5.03□□□□□ -1.6
SKA3Q8IX90 AC016705.1-201ENST00000548231 1891 ntTSL 5 BASIC5.03□□□□□ -1.6
SKA3Q8IX90 MYBPC1-201ENST00000361466 3899 ntAPPRIS P4 TSL 1 (best) BASIC5.02□□□□□ -1.61
SKA3Q8IX90 PAK3-205ENST00000417227 2196 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
SKA3Q8IX90 AC009962.1-201ENST00000567327 3813 ntBASIC5.02□□□□□ -1.61
SKA3Q8IX90 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC5.02□□□□□ -1.61
SKA3Q8IX90 MEMO1-202ENST00000379383 1498 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
SKA3Q8IX90 AC006288.1-201ENST00000565320 1463 ntTSL 3 BASIC5.02□□□□□ -1.61
SKA3Q8IX90 ZNF227-208ENST00000589005 2943 ntTSL 2 BASIC5.02□□□□□ -1.61
SKA3Q8IX90 LRRC49-223ENST00000560369 2586 ntAPPRIS ALT1 TSL 2 BASIC5.02□□□□□ -1.61
SKA3Q8IX90 OR1L4-201ENST00000259466 936 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
SKA3Q8IX90 U3.7-201ENST00000363668 216 ntBASIC5.02□□□□□ -1.61
SKA3Q8IX90 FIG4-202ENST00000368941 791 ntTSL 3 BASIC5.02□□□□□ -1.61
SKA3Q8IX90 LINC01620-202ENST00000372910 649 ntTSL 5 BASIC5.02□□□□□ -1.61
SKA3Q8IX90 TRAV10-201ENST00000390432 379 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
SKA3Q8IX90 RPL11P3-201ENST00000395256 523 ntBASIC5.02□□□□□ -1.61
SKA3Q8IX90 RPS3AP2-201ENST00000407190 754 ntBASIC5.02□□□□□ -1.61
SKA3Q8IX90 SNORA11.5-201ENST00000408163 128 ntBASIC5.02□□□□□ -1.61
SKA3Q8IX90 MIR1282-201ENST00000408865 101 ntBASIC5.02□□□□□ -1.61
SKA3Q8IX90 SETP15-201ENST00000412724 337 ntBASIC5.02□□□□□ -1.61
SKA3Q8IX90 METTL15P3-201ENST00000415522 1221 ntBASIC5.02□□□□□ -1.61
SKA3Q8IX90 AC004882.2-201ENST00000420180 244 ntTSL 5 BASIC5.02□□□□□ -1.61
SKA3Q8IX90 RPS3P2-201ENST00000421346 701 ntBASIC5.02□□□□□ -1.61
SKA3Q8IX90 AC092168.2-201ENST00000430586 717 ntTSL 3 BASIC5.02□□□□□ -1.61
SKA3Q8IX90 GK-IT1-201ENST00000441146 397 ntTSL 5 BASIC5.02□□□□□ -1.61
SKA3Q8IX90 AC023271.1-201ENST00000445936 1090 ntBASIC5.02□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 85.9 ms