Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 AC096996.1-201ENST00000563813 325 ntBASIC6.13□□□□□ -1.43
USP41Q3LFD5 AC007346.2-201ENST00000564816 892 ntBASIC6.13□□□□□ -1.43
USP41Q3LFD5 AC015720.2-201ENST00000567709 334 ntBASIC6.13□□□□□ -1.43
USP41Q3LFD5 AC005726.5-201ENST00000585189 298 ntTSL 5 BASIC6.13□□□□□ -1.43
USP41Q3LFD5 AC025857.2-201ENST00000602711 238 ntBASIC6.13□□□□□ -1.43
USP41Q3LFD5 AC117490.2-201ENST00000610042 594 ntBASIC6.13□□□□□ -1.43
USP41Q3LFD5 AC007204.2-201ENST00000615022 616 ntBASIC6.13□□□□□ -1.43
USP41Q3LFD5 Metazoa_SRP.55-201ENST00000618452 275 ntBASIC6.13□□□□□ -1.43
USP41Q3LFD5 AC006213.5-201ENST00000619673 288 ntBASIC6.13□□□□□ -1.43
USP41Q3LFD5 AC069234.4-201ENST00000621276 412 ntBASIC6.13□□□□□ -1.43
USP41Q3LFD5 LINC01320-210ENST00000626008 929 ntTSL 5 BASIC6.13□□□□□ -1.43
USP41Q3LFD5 NBPF26-202ENST00000611287 2701 ntTSL 5 BASIC6.13□□□□□ -1.43
USP41Q3LFD5 NBPF14-211ENST00000621070 2701 ntTSL 5 BASIC6.13□□□□□ -1.43
USP41Q3LFD5 R3HDM1-202ENST00000409478 4272 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
USP41Q3LFD5 AC015799.1-201ENST00000622996 3122 ntBASIC6.13□□□□□ -1.43
USP41Q3LFD5 TTF2-201ENST00000369466 9462 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
USP41Q3LFD5 HAT1-201ENST00000264108 1626 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
USP41Q3LFD5 MAK-204ENST00000536370 3767 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
USP41Q3LFD5 TRAT1-201ENST00000295756 1919 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
USP41Q3LFD5 TESPA1-212ENST00000532804 2000 ntAPPRIS ALT2 TSL 5 BASIC6.13□□□□□ -1.43
USP41Q3LFD5 LINC00891-201ENST00000627173 4113 ntTSL 2 BASIC6.13□□□□□ -1.43
USP41Q3LFD5 AJ009632.2-208ENST00000635525 4123 ntTSL 5 BASIC6.13□□□□□ -1.43
USP41Q3LFD5 AL080276.2-201ENST00000637995 2090 ntTSL 3 BASIC6.13□□□□□ -1.43
USP41Q3LFD5 ESRRG-224ENST00000616180 5194 ntAPPRIS P1 TSL 5 BASIC6.12□□□□□ -1.43
USP41Q3LFD5 AL731532.1-201ENST00000623972 4236 ntBASIC6.12□□□□□ -1.43
USP41Q3LFD5 OR2M7-201ENST00000317965 939 ntAPPRIS P1 BASIC6.12□□□□□ -1.43
USP41Q3LFD5 OR8D4-201ENST00000321355 1331 ntAPPRIS P1 BASIC6.12□□□□□ -1.43
USP41Q3LFD5 GAPDHP24-201ENST00000328713 983 ntBASIC6.12□□□□□ -1.43
USP41Q3LFD5 NCOA4P2-201ENST00000340589 1813 ntBASIC6.12□□□□□ -1.43
USP41Q3LFD5 PRLR-203ENST00000348262 1339 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
USP41Q3LFD5 ESRRG-206ENST00000366938 5274 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
USP41Q3LFD5 PRB3-201ENST00000381842 1091 ntAPPRIS ALT2 TSL 5 BASIC6.12□□□□□ -1.43
USP41Q3LFD5 CALN1-203ENST00000395276 9189 ntAPPRIS P3 TSL 1 (best) BASIC6.12□□□□□ -1.43
USP41Q3LFD5 GAPDHP42-201ENST00000406848 981 ntBASIC6.12□□□□□ -1.43
USP41Q3LFD5 RN7SKP59-201ENST00000410520 314 ntBASIC6.12□□□□□ -1.43
USP41Q3LFD5 PRDM2-206ENST00000413440 6175 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
USP41Q3LFD5 NIFKP3-201ENST00000417799 865 ntBASIC6.12□□□□□ -1.43
USP41Q3LFD5 AL353693.1-201ENST00000429567 442 ntTSL 3 BASIC6.12□□□□□ -1.43
USP41Q3LFD5 CFL1P1-202ENST00000432948 411 ntBASIC6.12□□□□□ -1.43
USP41Q3LFD5 METTL6-203ENST00000443029 4020 ntAPPRIS P1 TSL 5 BASIC6.12□□□□□ -1.43
USP41Q3LFD5 CYCSP51-201ENST00000443545 318 ntBASIC6.12□□□□□ -1.43
USP41Q3LFD5 OR6C72P-201ENST00000451403 892 ntBASIC6.12□□□□□ -1.43
USP41Q3LFD5 AL450344.1-201ENST00000456018 639 ntTSL 2 BASIC6.12□□□□□ -1.43
USP41Q3LFD5 CD86-204ENST00000469710 1604 ntTSL 2 BASIC6.12□□□□□ -1.43
USP41Q3LFD5 AL035690.1-201ENST00000490892 383 ntBASIC6.12□□□□□ -1.43
USP41Q3LFD5 AC007370.1-201ENST00000503163 316 ntTSL 2 BASIC6.12□□□□□ -1.43
USP41Q3LFD5 AC114954.1-201ENST00000506656 820 ntTSL 3 BASIC6.12□□□□□ -1.43
USP41Q3LFD5 RNA5SP34-201ENST00000516887 130 ntBASIC6.12□□□□□ -1.43
USP41Q3LFD5 AC008429.4-201ENST00000521201 182 ntBASIC6.12□□□□□ -1.43
USP41Q3LFD5 AP000619.2-201ENST00000546014 969 ntBASIC6.12□□□□□ -1.43
USP41Q3LFD5 MORF4L1-205ENST00000558502 855 ntTSL 3 BASIC6.12□□□□□ -1.43
USP41Q3LFD5 LINC01243-201ENST00000562065 721 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
USP41Q3LFD5 AC003682.1-201ENST00000599190 462 ntTSL 2 BASIC6.12□□□□□ -1.43
USP41Q3LFD5 AC073254.1-207ENST00000600482 714 ntTSL 5 BASIC6.12□□□□□ -1.43
USP41Q3LFD5 OR8H1-202ENST00000610894 927 ntAPPRIS ALT1 BASIC6.12□□□□□ -1.43
USP41Q3LFD5 RNA5SP439-201ENST00000617595 124 ntBASIC6.12□□□□□ -1.43
USP41Q3LFD5 AC009120.7-201ENST00000623452 780 ntBASIC6.12□□□□□ -1.43
USP41Q3LFD5 MFSD8-219ENST00000641228 2559 ntBASIC6.12□□□□□ -1.43
USP41Q3LFD5 OR12D2-207ENST00000642051 1496 ntAPPRIS P1 BASIC6.12□□□□□ -1.43
USP41Q3LFD5 DGKB-201ENST00000399322 6684 ntAPPRIS P2 TSL 5 BASIC6.12□□□□□ -1.43
USP41Q3LFD5 LRRC37A3-204ENST00000400877 3273 ntTSL 2 BASIC6.12□□□□□ -1.43
USP41Q3LFD5 ZNF638-201ENST00000264447 6505 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
USP41Q3LFD5 NFAT5-212ENST00000627621 5875 ntAPPRIS ALT1 TSL 2 BASIC6.12□□□□□ -1.43
USP41Q3LFD5 CD84-208ENST00000534968 7885 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
USP41Q3LFD5 CLIP4-202ENST00000401605 2322 ntTSL 2 BASIC6.11□□□□□ -1.43
USP41Q3LFD5 RANBP3L-202ENST00000502994 2278 ntAPPRIS ALT1 TSL 2 BASIC6.11□□□□□ -1.43
USP41Q3LFD5 FRMD6-205ENST00000554167 4176 ntTSL 2 BASIC6.11□□□□□ -1.43
USP41Q3LFD5 FBXO25-204ENST00000382824 10386 ntAPPRIS P4 TSL 1 (best) BASIC6.11□□□□□ -1.43
USP41Q3LFD5 KBTBD3-201ENST00000526793 3751 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
USP41Q3LFD5 NBPF26-201ENST00000609741 3671 ntTSL 5 BASIC6.11□□□□□ -1.43
USP41Q3LFD5 LYVE1-201ENST00000256178 3273 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
USP41Q3LFD5 ATXN7-208ENST00000484332 2741 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
USP41Q3LFD5 AP004607.3-201ENST00000530354 3915 ntBASIC6.11□□□□□ -1.43
USP41Q3LFD5 RBMS3-AS2-201ENST00000366321 582 ntTSL 3 BASIC6.11□□□□□ -1.43
USP41Q3LFD5 NPM1P37-201ENST00000403105 874 ntBASIC6.11□□□□□ -1.43
USP41Q3LFD5 AL445190.1-201ENST00000416448 288 ntTSL 5 BASIC6.11□□□□□ -1.43
USP41Q3LFD5 AL133173.1-201ENST00000423458 397 ntBASIC6.11□□□□□ -1.43
USP41Q3LFD5 AC000095.2-201ENST00000424407 768 ntTSL 2 BASIC6.11□□□□□ -1.43
USP41Q3LFD5 MAPRE1P3-201ENST00000435438 796 ntBASIC6.11□□□□□ -1.43
USP41Q3LFD5 TTC26-205ENST00000474035 1193 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
USP41Q3LFD5 AC010261.2-201ENST00000515563 588 ntTSL 2 BASIC6.11□□□□□ -1.43
USP41Q3LFD5 AC111149.1-201ENST00000522560 343 ntTSL 3 BASIC6.11□□□□□ -1.43
USP41Q3LFD5 AP003168.1-201ENST00000530091 307 ntBASIC6.11□□□□□ -1.43
USP41Q3LFD5 AL049779.3-201ENST00000557141 606 ntBASIC6.11□□□□□ -1.43
USP41Q3LFD5 MIR3908-201ENST00000579798 126 ntBASIC6.11□□□□□ -1.43
USP41Q3LFD5 VDAC1P8-204ENST00000589489 997 ntTSL 5 BASIC6.11□□□□□ -1.43
USP41Q3LFD5 AP000873.2-201ENST00000602381 406 ntTSL 2 BASIC6.11□□□□□ -1.43
USP41Q3LFD5 AC005520.3-201ENST00000602874 370 ntBASIC6.11□□□□□ -1.43
USP41Q3LFD5 AC135983.2-201ENST00000604301 628 ntTSL 5 BASIC6.11□□□□□ -1.43
USP41Q3LFD5 AL162574.2-201ENST00000614618 657 ntBASIC6.11□□□□□ -1.43
USP41Q3LFD5 AC090607.5-201ENST00000615692 224 ntBASIC6.11□□□□□ -1.43
USP41Q3LFD5 TADA2A-212ENST00000620367 1043 ntTSL 5 BASIC6.11□□□□□ -1.43
USP41Q3LFD5 ST6GALNAC3-203ENST00000621530 617 ntTSL 5 BASIC6.11□□□□□ -1.43
USP41Q3LFD5 AC000095.2-202ENST00000637415 154 ntBASIC6.11□□□□□ -1.43
USP41Q3LFD5 AL139254.3-201ENST00000641097 674 ntBASIC6.11□□□□□ -1.43
USP41Q3LFD5 WDR72-203ENST00000557913 5900 ntAPPRIS ALT1 TSL 5 BASIC6.11□□□□□ -1.43
USP41Q3LFD5 PRRC1-201ENST00000296666 4699 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
USP41Q3LFD5 TOPORSLP1-201ENST00000467693 2102 ntBASIC6.11□□□□□ -1.43
USP41Q3LFD5 SCAPER-207ENST00000563290 5028 ntAPPRIS P1 TSL 5 BASIC6.11□□□□□ -1.43
USP41Q3LFD5 PSG1-206ENST00000595356 1903 ntAPPRIS ALT2 TSL 1 (best) BASIC6.11□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 78.6 ms