Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AC004158.1-201ENST00000564508 4319 ntBASIC5.32□□□□□ -1.56
SOX3P41225 RNF213-204ENST00000508628 17730 ntAPPRIS ALT2 TSL 5 BASIC5.32□□□□□ -1.56
SOX3P41225 DEFB118-201ENST00000253381 1158 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
SOX3P41225 OR5M8-201ENST00000327216 1047 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
SOX3P41225 SNTN-201ENST00000343837 1090 ntAPPRIS P1 TSL 2 BASIC5.32□□□□□ -1.56
SOX3P41225 RN7SKP185-201ENST00000362813 326 ntBASIC5.32□□□□□ -1.56
SOX3P41225 GPR52-201ENST00000367685 1088 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
SOX3P41225 HIST1H3PS1-201ENST00000404612 417 ntBASIC5.32□□□□□ -1.56
SOX3P41225 AC006455.6-201ENST00000426192 893 ntBASIC5.32□□□□□ -1.56
SOX3P41225 RPS27AP6-201ENST00000427962 448 ntBASIC5.32□□□□□ -1.56
SOX3P41225 UBE2L5P-201ENST00000436446 465 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
SOX3P41225 AL590399.4-201ENST00000436561 601 ntBASIC5.32□□□□□ -1.56
SOX3P41225 YWHAEP1-201ENST00000453697 763 ntBASIC5.32□□□□□ -1.56
SOX3P41225 LINC01456-201ENST00000453902 708 ntTSL 3 BASIC5.32□□□□□ -1.56
SOX3P41225 MTCYBP14-201ENST00000457471 715 ntBASIC5.32□□□□□ -1.56
SOX3P41225 OARD1-207ENST00000468811 819 ntAPPRIS P1 TSL 2 BASIC5.32□□□□□ -1.56
SOX3P41225 RN7SL174P-201ENST00000475578 289 ntBASIC5.32□□□□□ -1.56
SOX3P41225 OR7E157P-201ENST00000494376 911 ntBASIC5.32□□□□□ -1.56
SOX3P41225 RN7SL101P-201ENST00000496350 279 ntBASIC5.32□□□□□ -1.56
SOX3P41225 AC109481.1-201ENST00000509173 282 ntBASIC5.32□□□□□ -1.56
SOX3P41225 RN7SKP5-201ENST00000517045 272 ntBASIC5.32□□□□□ -1.56
SOX3P41225 NSMCE2-202ENST00000517315 996 ntTSL 3 BASIC5.32□□□□□ -1.56
SOX3P41225 AC139365.2-201ENST00000517972 253 ntBASIC5.32□□□□□ -1.56
SOX3P41225 AC130364.2-201ENST00000528639 604 ntBASIC5.32□□□□□ -1.56
SOX3P41225 HMGB1P42-201ENST00000532126 553 ntBASIC5.32□□□□□ -1.56
SOX3P41225 AC068722.1-202ENST00000559600 655 ntTSL 3 BASIC5.32□□□□□ -1.56
SOX3P41225 AC010547.6-201ENST00000571789 193 ntBASIC5.32□□□□□ -1.56
SOX3P41225 GTSCR1-201ENST00000582578 470 ntTSL 3 BASIC5.32□□□□□ -1.56
SOX3P41225 AC011990.1-201ENST00000592809 734 ntTSL 3 BASIC5.32□□□□□ -1.56
SOX3P41225 AC010463.2-201ENST00000597592 661 ntTSL 5 BASIC5.32□□□□□ -1.56
SOX3P41225 LINC01198-207ENST00000598084 881 ntTSL 5 BASIC5.32□□□□□ -1.56
SOX3P41225 LINC01125-220ENST00000599501 965 ntAPPRIS ALT2 TSL 5 BASIC5.32□□□□□ -1.56
SOX3P41225 AL353811.1-202ENST00000602614 618 ntTSL 3 BASIC5.32□□□□□ -1.56
SOX3P41225 AL713998.2-201ENST00000604538 1198 ntBASIC5.32□□□□□ -1.56
SOX3P41225 AC092944.2-201ENST00000605443 889 ntBASIC5.32□□□□□ -1.56
SOX3P41225 AL133481.2-203ENST00000607558 139 ntBASIC5.32□□□□□ -1.56
SOX3P41225 AC015712.7-201ENST00000615211 635 ntBASIC5.32□□□□□ -1.56
SOX3P41225 Metazoa_SRP.43-201ENST00000616394 271 ntBASIC5.32□□□□□ -1.56
SOX3P41225 MIR6729-201ENST00000618194 65 ntBASIC5.32□□□□□ -1.56
SOX3P41225 AC005618.4-201ENST00000625053 554 ntBASIC5.32□□□□□ -1.56
SOX3P41225 DARS-AS1-227ENST00000627442 633 ntTSL 5 BASIC5.32□□□□□ -1.56
SOX3P41225 AP2B1-222ENST00000628168 192 ntTSL 5 BASIC5.32□□□□□ -1.56
SOX3P41225 N4BP2L2-IT2-201ENST00000629393 4890 ntBASIC5.32□□□□□ -1.56
SOX3P41225 ETV1-208ENST00000420159 6231 ntTSL 2 BASIC5.32□□□□□ -1.56
SOX3P41225 RALGAPA1P1-201ENST00000443361 6232 ntBASIC5.32□□□□□ -1.56
SOX3P41225 DYNC1I2-202ENST00000397119 2604 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
SOX3P41225 OR7C1-204ENST00000642000 11290 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
SOX3P41225 GART-205ENST00000381839 3469 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
SOX3P41225 SYNCRIP-204ENST00000616122 6764 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
SOX3P41225 NR3C2-202ENST00000344721 5712 ntAPPRIS P1 TSL 5 BASIC5.32□□□□□ -1.56
SOX3P41225 MYBPC1-209ENST00000547509 3749 ntAPPRIS ALT2 TSL 5 BASIC5.32□□□□□ -1.56
SOX3P41225 SLC12A1-201ENST00000330289 1764 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
SOX3P41225 PTK2-213ENST00000519465 3279 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
SOX3P41225 MAPRE2-202ENST00000413393 4173 ntAPPRIS ALT1 TSL 5 BASIC5.31□□□□□ -1.56
SOX3P41225 ZCCHC8-201ENST00000536306 2904 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
SOX3P41225 ZNF677-201ENST00000333952 3422 ntAPPRIS P1 TSL 2 BASIC5.31□□□□□ -1.56
SOX3P41225 NSD1-204ENST00000439151 12892 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
SOX3P41225 SLC38A1-211ENST00000612161 1607 ntTSL 5 BASIC5.31□□□□□ -1.56
SOX3P41225 DOPEY1-201ENST00000237163 7995 ntAPPRIS ALT1 TSL 5 BASIC5.31□□□□□ -1.56
SOX3P41225 NRXN1-242ENST00000635519 3553 ntTSL 5 BASIC5.31□□□□□ -1.56
SOX3P41225 AC016576.1-201ENST00000637153 3585 ntTSL 5 BASIC5.31□□□□□ -1.56
SOX3P41225 RLN1-201ENST00000223862 967 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
SOX3P41225 SNORA64.1-201ENST00000362600 132 ntBASIC5.31□□□□□ -1.56
SOX3P41225 SNORA5.1-201ENST00000384275 131 ntBASIC5.31□□□□□ -1.56
SOX3P41225 AL512422.1-201ENST00000407033 553 ntBASIC5.31□□□□□ -1.56
SOX3P41225 AL049812.3-201ENST00000412348 417 ntTSL 3 BASIC5.31□□□□□ -1.56
SOX3P41225 MIR3681HG-202ENST00000412606 578 ntTSL 5 BASIC5.31□□□□□ -1.56
SOX3P41225 OR2AT2P-201ENST00000413438 905 ntBASIC5.31□□□□□ -1.56
SOX3P41225 SDHDP6-201ENST00000414693 480 ntBASIC5.31□□□□□ -1.56
SOX3P41225 KCNMA1-AS3-201ENST00000418515 701 ntTSL 3 BASIC5.31□□□□□ -1.56
SOX3P41225 AC004882.2-201ENST00000420180 244 ntTSL 5 BASIC5.31□□□□□ -1.56
SOX3P41225 AL139008.2-201ENST00000420315 395 ntTSL 3 BASIC5.31□□□□□ -1.56
SOX3P41225 LINC00626-201ENST00000420691 955 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
SOX3P41225 CHEK2P5-201ENST00000423877 246 ntBASIC5.31□□□□□ -1.56
SOX3P41225 AL390115.1-201ENST00000425271 423 ntTSL 5 BASIC5.31□□□□□ -1.56
SOX3P41225 VTI1BP4-201ENST00000427516 527 ntBASIC5.31□□□□□ -1.56
SOX3P41225 AL022331.1-201ENST00000429025 477 ntBASIC5.31□□□□□ -1.56
SOX3P41225 TEX41-206ENST00000432608 661 ntTSL 3 BASIC5.31□□□□□ -1.56
SOX3P41225 AC015923.1-201ENST00000435892 305 ntTSL 2 BASIC5.31□□□□□ -1.56
SOX3P41225 GAPDHP48-201ENST00000436626 961 ntBASIC5.31□□□□□ -1.56
SOX3P41225 AL359265.3-201ENST00000456125 579 ntTSL 5 BASIC5.31□□□□□ -1.56
SOX3P41225 AC006539.1-201ENST00000481419 501 ntBASIC5.31□□□□□ -1.56
SOX3P41225 CLEC19A-204ENST00000493231 557 ntTSL 3 BASIC5.31□□□□□ -1.56
SOX3P41225 AC009120.1-201ENST00000493458 473 ntBASIC5.31□□□□□ -1.56
SOX3P41225 AGGF1P3-201ENST00000493675 1213 ntBASIC5.31□□□□□ -1.56
SOX3P41225 AC112184.1-201ENST00000505179 312 ntBASIC5.31□□□□□ -1.56
SOX3P41225 WASHC5-AS1-201ENST00000519140 587 ntTSL 4 BASIC5.31□□□□□ -1.56
SOX3P41225 AC024224.2-201ENST00000544225 782 ntTSL 3 BASIC5.31□□□□□ -1.56
SOX3P41225 AC087286.2-201ENST00000558980 660 ntTSL 3 BASIC5.31□□□□□ -1.56
SOX3P41225 AC020978.7-201ENST00000575953 1187 ntBASIC5.31□□□□□ -1.56
SOX3P41225 AC007431.2-201ENST00000577189 563 ntTSL 2 BASIC5.31□□□□□ -1.56
SOX3P41225 AC012588.1-201ENST00000583852 358 ntTSL 3 BASIC5.31□□□□□ -1.56
SOX3P41225 AC011445.2-201ENST00000599274 173 ntBASIC5.31□□□□□ -1.56
SOX3P41225 ZNF418-210ENST00000600989 597 ntTSL 5 BASIC5.31□□□□□ -1.56
SOX3P41225 AL513327.3-201ENST00000602618 469 ntBASIC5.31□□□□□ -1.56
SOX3P41225 AC018690.1-201ENST00000608144 626 ntBASIC5.31□□□□□ -1.56
SOX3P41225 RNA5SP440-201ENST00000612665 119 ntBASIC5.31□□□□□ -1.56
SOX3P41225 AL513314.2-202ENST00000617077 536 ntTSL 5 BASIC5.31□□□□□ -1.56
SOX3P41225 AL513314.2-201ENST00000621440 545 ntTSL 5 BASIC5.31□□□□□ -1.56
SOX3P41225 AL359094.1-201ENST00000627944 566 ntTSL 5 BASIC5.31□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 71.2 ms