Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AC145207.6-201ENST00000579981 782 ntTSL 5 BASIC7.47□□□□□ -1.21
CCDC39Q9UFE4 AC006305.3-201ENST00000590589 454 ntTSL 2 BASIC7.47□□□□□ -1.21
CCDC39Q9UFE4 AP002884.5-201ENST00000595053 1132 ntBASIC7.47□□□□□ -1.21
CCDC39Q9UFE4 AL512430.4-201ENST00000603085 613 ntBASIC7.47□□□□□ -1.21
CCDC39Q9UFE4 AL356986.1-201ENST00000604085 341 ntBASIC7.47□□□□□ -1.21
CCDC39Q9UFE4 AC010857.1-201ENST00000606398 594 ntBASIC7.47□□□□□ -1.21
CCDC39Q9UFE4 AC108747.1-201ENST00000609508 535 ntBASIC7.47□□□□□ -1.21
CCDC39Q9UFE4 AC079395.2-201ENST00000610982 737 ntBASIC7.47□□□□□ -1.21
CCDC39Q9UFE4 AC092106.3-201ENST00000611308 722 ntBASIC7.47□□□□□ -1.21
CCDC39Q9UFE4 AC009163.6-201ENST00000612367 342 ntBASIC7.47□□□□□ -1.21
CCDC39Q9UFE4 AC024595.1-201ENST00000623088 387 ntBASIC7.47□□□□□ -1.21
CCDC39Q9UFE4 AL353763.1-201ENST00000624467 1628 ntBASIC7.47□□□□□ -1.21
CCDC39Q9UFE4 GLRA2-204ENST00000443437 3182 ntTSL 2 BASIC7.47□□□□□ -1.21
CCDC39Q9UFE4 ADAM5-208ENST00000505455 1998 ntTSL 1 (best) BASIC7.47□□□□□ -1.21
CCDC39Q9UFE4 MRE11-204ENST00000407439 2684 ntTSL 2 BASIC7.47□□□□□ -1.21
CCDC39Q9UFE4 AC092724.1-201ENST00000624623 3397 ntBASIC7.47□□□□□ -1.21
CCDC39Q9UFE4 SLC2A3P4-201ENST00000521259 1471 ntBASIC7.47□□□□□ -1.21
CCDC39Q9UFE4 GTDC1-204ENST00000392869 10514 ntAPPRIS P1 TSL 5 BASIC7.47□□□□□ -1.21
CCDC39Q9UFE4 ZNF736P9Y-201ENST00000439586 1345 ntBASIC7.47□□□□□ -1.21
CCDC39Q9UFE4 PNPLA4-204ENST00000537427 2559 ntTSL 2 BASIC7.47□□□□□ -1.21
CCDC39Q9UFE4 GPR1-209ENST00000612892 2565 ntAPPRIS P1 TSL 4 BASIC7.47□□□□□ -1.21
CCDC39Q9UFE4 STK3-216ENST00000523601 3107 ntTSL 2 BASIC7.47□□□□□ -1.21
CCDC39Q9UFE4 AFM-201ENST00000226355 2059 ntAPPRIS P1 TSL 1 (best) BASIC7.47□□□□□ -1.21
CCDC39Q9UFE4 SAMD9L-202ENST00000411955 5831 ntAPPRIS P1 TSL 5 BASIC7.46□□□□□ -1.21
CCDC39Q9UFE4 SNRPB2-202ENST00000377943 1588 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.21
CCDC39Q9UFE4 ACPP-202ENST00000351273 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC7.46□□□□□ -1.21
CCDC39Q9UFE4 SH2D1B-201ENST00000367929 2523 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.21
CCDC39Q9UFE4 AC027575.3-201ENST00000583058 2747 ntBASIC7.46□□□□□ -1.21
CCDC39Q9UFE4 DNM1P47-202ENST00000561463 15043 ntTSL 5 BASIC7.46□□□□□ -1.21
CCDC39Q9UFE4 EPS15-203ENST00000371733 5225 ntAPPRIS P2 TSL 1 (best) BASIC7.46□□□□□ -1.21
CCDC39Q9UFE4 AL390237.1-201ENST00000404226 1415 ntBASIC7.46□□□□□ -1.21
CCDC39Q9UFE4 PDE4D-216ENST00000507116 3350 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.22
CCDC39Q9UFE4 GTDC1-207ENST00000409298 2209 ntTSL 5 BASIC7.46□□□□□ -1.22
CCDC39Q9UFE4 SPP2-201ENST00000168148 1024 ntAPPRIS P2 TSL 1 (best) BASIC7.46□□□□□ -1.22
CCDC39Q9UFE4 OR51M1-201ENST00000328611 1058 ntAPPRIS P1 BASIC7.46□□□□□ -1.22
CCDC39Q9UFE4 OR13F1-201ENST00000334726 960 ntAPPRIS P1 BASIC7.46□□□□□ -1.22
CCDC39Q9UFE4 XAGE3-201ENST00000346279 497 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.22
CCDC39Q9UFE4 SNORD51.1-201ENST00000365405 77 ntBASIC7.46□□□□□ -1.22
CCDC39Q9UFE4 RNU6-761P-201ENST00000384148 107 ntBASIC7.46□□□□□ -1.22
CCDC39Q9UFE4 ZNF603P-201ENST00000405613 487 ntBASIC7.46□□□□□ -1.22
CCDC39Q9UFE4 RPS3AP24-201ENST00000407896 734 ntBASIC7.46□□□□□ -1.22
CCDC39Q9UFE4 HMGA1P8-201ENST00000414130 321 ntBASIC7.46□□□□□ -1.22
CCDC39Q9UFE4 AL121904.1-202ENST00000416638 656 ntTSL 5 BASIC7.46□□□□□ -1.22
CCDC39Q9UFE4 LINC01674-201ENST00000427446 504 ntTSL 3 BASIC7.46□□□□□ -1.22
CCDC39Q9UFE4 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC7.46□□□□□ -1.22
CCDC39Q9UFE4 AC116038.1-201ENST00000432250 408 ntTSL 3 BASIC7.46□□□□□ -1.22
CCDC39Q9UFE4 AL512658.1-201ENST00000449072 533 ntTSL 3 BASIC7.46□□□□□ -1.22
CCDC39Q9UFE4 SEPT7P3-201ENST00000455017 621 ntBASIC7.46□□□□□ -1.22
CCDC39Q9UFE4 MTAPP1-201ENST00000489154 819 ntBASIC7.46□□□□□ -1.22
CCDC39Q9UFE4 LINC02101-201ENST00000505861 725 ntTSL 4 BASIC7.46□□□□□ -1.22
CCDC39Q9UFE4 AC083795.2-201ENST00000510034 610 ntTSL 3 BASIC7.46□□□□□ -1.22
CCDC39Q9UFE4 AC106864.1-201ENST00000510655 640 ntTSL 3 BASIC7.46□□□□□ -1.22
CCDC39Q9UFE4 IQCH-203ENST00000512104 1000 ntTSL 2 BASIC7.46□□□□□ -1.22
CCDC39Q9UFE4 OSTC-204ENST00000512478 663 ntTSL 5 BASIC7.46□□□□□ -1.22
CCDC39Q9UFE4 AC097535.1-201ENST00000515263 332 ntTSL 3 BASIC7.46□□□□□ -1.22
CCDC39Q9UFE4 ZFPM2-AS1-204ENST00000520433 748 ntTSL 3 BASIC7.46□□□□□ -1.22
CCDC39Q9UFE4 AF235103.1-201ENST00000530223 439 ntTSL 3 BASIC7.46□□□□□ -1.22
CCDC39Q9UFE4 AP001107.4-201ENST00000533576 539 ntTSL 3 BASIC7.46□□□□□ -1.22
CCDC39Q9UFE4 AC007115.1-201ENST00000546853 234 ntBASIC7.46□□□□□ -1.22
CCDC39Q9UFE4 CCNG2P1-201ENST00000549521 1000 ntBASIC7.46□□□□□ -1.22
CCDC39Q9UFE4 LINC02461-201ENST00000553211 836 ntTSL 3 BASIC7.46□□□□□ -1.22
CCDC39Q9UFE4 AL162632.2-201ENST00000553933 399 ntBASIC7.46□□□□□ -1.22
CCDC39Q9UFE4 AGGF1P9-201ENST00000561884 913 ntBASIC7.46□□□□□ -1.22
CCDC39Q9UFE4 AC099511.1-201ENST00000564561 590 ntTSL 2 BASIC7.46□□□□□ -1.22
CCDC39Q9UFE4 AC012417.1-201ENST00000582307 1039 ntBASIC7.46□□□□□ -1.22
CCDC39Q9UFE4 ZNF431-203ENST00000594425 610 ntTSL 2 BASIC7.46□□□□□ -1.22
CCDC39Q9UFE4 AL353593.3-201ENST00000602778 764 ntTSL 2 BASIC7.46□□□□□ -1.22
CCDC39Q9UFE4 AC091133.5-201ENST00000603088 301 ntBASIC7.46□□□□□ -1.22
CCDC39Q9UFE4 ACYP2-208ENST00000606865 674 ntTSL 5 BASIC7.46□□□□□ -1.22
CCDC39Q9UFE4 AL137000.1-201ENST00000610528 1244 ntBASIC7.46□□□□□ -1.22
CCDC39Q9UFE4 HOXA11-AS1_3.1-201ENST00000613383 98 ntBASIC7.46□□□□□ -1.22
CCDC39Q9UFE4 ELSPBP1-206ENST00000619003 893 ntAPPRIS ALT2 TSL 5 BASIC7.46□□□□□ -1.22
CCDC39Q9UFE4 AC026367.3-201ENST00000619032 590 ntBASIC7.46□□□□□ -1.22
CCDC39Q9UFE4 AC099842.1-201ENST00000619919 596 ntBASIC7.46□□□□□ -1.22
CCDC39Q9UFE4 AC061999.1-201ENST00000624454 177 ntBASIC7.46□□□□□ -1.22
CCDC39Q9UFE4 AL390318.1-201ENST00000624564 687 ntBASIC7.46□□□□□ -1.22
CCDC39Q9UFE4 SKIV2L-216ENST00000628157 210 ntTSL 5 BASIC7.46□□□□□ -1.22
CCDC39Q9UFE4 AC103706.2-201ENST00000638080 240 ntBASIC7.46□□□□□ -1.22
CCDC39Q9UFE4 STIL-203ENST00000371877 5009 ntAPPRIS ALT2 TSL 1 (best) BASIC7.46□□□□□ -1.22
CCDC39Q9UFE4 C4orf26-201ENST00000311623 1874 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.22
CCDC39Q9UFE4 LINC02086-202ENST00000492522 2091 ntTSL 5 BASIC7.46□□□□□ -1.22
CCDC39Q9UFE4 THAP6-201ENST00000311638 3549 ntAPPRIS P3 TSL 1 (best) BASIC7.46□□□□□ -1.22
CCDC39Q9UFE4 NBPF12-204ENST00000613714 2701 ntTSL 5 BASIC7.46□□□□□ -1.22
CCDC39Q9UFE4 GCSAML-206ENST00000527084 1308 ntAPPRIS ALT2 TSL 1 (best) BASIC7.46□□□□□ -1.22
CCDC39Q9UFE4 LINC02388-201ENST00000550678 1975 ntTSL 2 BASIC7.46□□□□□ -1.22
CCDC39Q9UFE4 TLR5-205ENST00000540964 4088 ntAPPRIS P1 TSL 5 BASIC7.46□□□□□ -1.22
CCDC39Q9UFE4 RGSL1-201ENST00000294854 3696 ntAPPRIS P1 TSL 1 (best) BASIC7.46□□□□□ -1.22
CCDC39Q9UFE4 SLAMF6-203ENST00000368059 2743 ntAPPRIS P3 TSL 1 (best) BASIC7.45□□□□□ -1.22
CCDC39Q9UFE4 DDX6P1-205ENST00000441966 1436 ntBASIC7.45□□□□□ -1.22
CCDC39Q9UFE4 AC092104.1-201ENST00000497346 1441 ntBASIC7.45□□□□□ -1.22
CCDC39Q9UFE4 SNW1-205ENST00000555761 1855 ntTSL 2 BASIC7.45□□□□□ -1.22
CCDC39Q9UFE4 AC062022.1-201ENST00000451026 1684 ntBASIC7.45□□□□□ -1.22
CCDC39Q9UFE4 CLEC4D-201ENST00000299665 1936 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
CCDC39Q9UFE4 STT3A-214ENST00000531491 2160 ntTSL 2 BASIC7.45□□□□□ -1.22
CCDC39Q9UFE4 PUM1-206ENST00000426105 4043 ntAPPRIS ALT1 TSL 1 (best) BASIC7.45□□□□□ -1.22
CCDC39Q9UFE4 LY96-201ENST00000284818 607 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.22
CCDC39Q9UFE4 RNA5SP382-201ENST00000363355 112 ntBASIC7.45□□□□□ -1.22
CCDC39Q9UFE4 RN7SKP191-201ENST00000364713 306 ntBASIC7.45□□□□□ -1.22
CCDC39Q9UFE4 AC074375.1-201ENST00000372993 192 ntBASIC7.45□□□□□ -1.22
CCDC39Q9UFE4 RNU6-1215P-201ENST00000384441 102 ntBASIC7.45□□□□□ -1.22
Retrieved 100 of 98,524 protein–RNA pairs in 84.2 ms