Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AC011473.2-201ENST00000596286 240 ntTSL 3 BASIC5.6□□□□□ -1.51
LHX3Q9UBR4 CDC42EP3P1-201ENST00000601004 764 ntBASIC5.6□□□□□ -1.51
LHX3Q9UBR4 AL160400.1-201ENST00000606385 1030 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
LHX3Q9UBR4 AC093388.1-201ENST00000609166 430 ntBASIC5.6□□□□□ -1.51
LHX3Q9UBR4 AC245041.2-202ENST00000613389 493 ntTSL 5 BASIC5.6□□□□□ -1.51
LHX3Q9UBR4 AC007204.2-201ENST00000615022 616 ntBASIC5.6□□□□□ -1.51
LHX3Q9UBR4 Xist_exon4.1-201ENST00000615964 126 ntBASIC5.6□□□□□ -1.51
LHX3Q9UBR4 AC068631.1-223ENST00000625877 472 ntTSL 5 BASIC5.6□□□□□ -1.51
LHX3Q9UBR4 LINC00850-201ENST00000629221 685 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
LHX3Q9UBR4 AC000095.2-202ENST00000637415 154 ntBASIC5.6□□□□□ -1.51
LHX3Q9UBR4 CDKL5-205ENST00000623535 12533 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
LHX3Q9UBR4 ZNF280B-201ENST00000613655 3714 ntAPPRIS P1 TSL 5 BASIC5.6□□□□□ -1.51
LHX3Q9UBR4 CEACAM1-201ENST00000161559 3519 ntAPPRIS P3 TSL 1 (best) BASIC5.6□□□□□ -1.51
LHX3Q9UBR4 CLIP4-202ENST00000401605 2322 ntTSL 2 BASIC5.6□□□□□ -1.51
LHX3Q9UBR4 TRAT1-201ENST00000295756 1919 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
LHX3Q9UBR4 ADGRL3-210ENST00000508946 4758 ntAPPRIS ALT2 TSL 5 BASIC5.6□□□□□ -1.51
LHX3Q9UBR4 PSG1-202ENST00000312439 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
LHX3Q9UBR4 KCNAB1-212ENST00000490337 3122 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
LHX3Q9UBR4 AC083899.1-201ENST00000454465 3819 ntBASIC5.59□□□□□ -1.51
LHX3Q9UBR4 KIAA2012-204ENST00000498697 3772 ntAPPRIS ALT2 TSL 5 BASIC5.59□□□□□ -1.51
LHX3Q9UBR4 TRPC4-202ENST00000355779 2784 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
LHX3Q9UBR4 TRPC4-204ENST00000379673 2760 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
LHX3Q9UBR4 CASC19-248ENST00000641674 1356 ntBASIC5.59□□□□□ -1.51
LHX3Q9UBR4 AC233968.1-201ENST00000611212 1300 ntBASIC5.59□□□□□ -1.51
LHX3Q9UBR4 LINC02388-201ENST00000550678 1975 ntTSL 2 BASIC5.59□□□□□ -1.51
LHX3Q9UBR4 OR2J3-202ENST00000641151 3297 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
LHX3Q9UBR4 HNMT-203ENST00000329366 835 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
LHX3Q9UBR4 BPHL-201ENST00000380368 797 ntTSL 5 BASIC5.59□□□□□ -1.51
LHX3Q9UBR4 OR3A2-201ENST00000408891 1076 ntBASIC5.59□□□□□ -1.51
LHX3Q9UBR4 RN7SKP17-201ENST00000411242 351 ntBASIC5.59□□□□□ -1.51
LHX3Q9UBR4 AC008060.2-201ENST00000415333 468 ntTSL 3 BASIC5.59□□□□□ -1.51
LHX3Q9UBR4 PCBP1-AS1-232ENST00000442040 1111 ntTSL 3 BASIC5.59□□□□□ -1.51
LHX3Q9UBR4 AL442224.1-201ENST00000443771 391 ntTSL 2 BASIC5.59□□□□□ -1.51
LHX3Q9UBR4 LINC02096-201ENST00000445035 953 ntTSL 5 BASIC5.59□□□□□ -1.51
LHX3Q9UBR4 AP000470.1-201ENST00000448063 693 ntTSL 5 BASIC5.59□□□□□ -1.51
LHX3Q9UBR4 LINC01496-201ENST00000448761 460 ntTSL 5 BASIC5.59□□□□□ -1.51
LHX3Q9UBR4 OR2AF1P-201ENST00000454899 889 ntBASIC5.59□□□□□ -1.51
LHX3Q9UBR4 EIF1P7-201ENST00000487533 337 ntBASIC5.59□□□□□ -1.51
LHX3Q9UBR4 RN7SL547P-201ENST00000490793 290 ntBASIC5.59□□□□□ -1.51
LHX3Q9UBR4 OR2A3P-201ENST00000493774 953 ntBASIC5.59□□□□□ -1.51
LHX3Q9UBR4 UCHL1-AS1-201ENST00000507190 592 ntTSL 4 BASIC5.59□□□□□ -1.51
LHX3Q9UBR4 AC084824.2-201ENST00000548906 345 ntBASIC5.59□□□□□ -1.51
LHX3Q9UBR4 LINC01243-201ENST00000562065 721 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
LHX3Q9UBR4 AC009113.2-201ENST00000563182 403 ntTSL 3 BASIC5.59□□□□□ -1.51
LHX3Q9UBR4 AC008794.2-201ENST00000587779 293 ntTSL 2 BASIC5.59□□□□□ -1.51
LHX3Q9UBR4 AC010245.2-201ENST00000606908 1167 ntBASIC5.59□□□□□ -1.51
LHX3Q9UBR4 AL359513.1-201ENST00000614364 557 ntBASIC5.59□□□□□ -1.51
LHX3Q9UBR4 MIR6886-201ENST00000619864 61 ntBASIC5.59□□□□□ -1.51
LHX3Q9UBR4 MIR8080-201ENST00000622224 89 ntBASIC5.59□□□□□ -1.51
LHX3Q9UBR4 SDAD1-203ENST00000395711 2513 ntTSL 2 BASIC5.59□□□□□ -1.51
LHX3Q9UBR4 EPHA4-202ENST00000409854 3454 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
LHX3Q9UBR4 ALB-209ENST00000503124 1741 ntTSL 5 BASIC5.59□□□□□ -1.51
LHX3Q9UBR4 SETD2-202ENST00000409792 8142 ntAPPRIS P1 TSL 5 BASIC5.59□□□□□ -1.52
LHX3Q9UBR4 MAK-204ENST00000536370 3767 ntTSL 1 (best) BASIC5.59□□□□□ -1.52
LHX3Q9UBR4 AC144833.1-201ENST00000567953 4089 ntBASIC5.58□□□□□ -1.52
LHX3Q9UBR4 CCDC18-AS1-205ENST00000421202 2973 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
LHX3Q9UBR4 AC099811.1-201ENST00000597755 1496 ntTSL 3 BASIC5.58□□□□□ -1.52
LHX3Q9UBR4 TPH1-201ENST00000250018 5325 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
LHX3Q9UBR4 AC104964.3-201ENST00000606115 2860 ntBASIC5.58□□□□□ -1.52
LHX3Q9UBR4 CHST9-203ENST00000618847 11388 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
LHX3Q9UBR4 IFI16-202ENST00000340979 2732 ntTSL 5 BASIC5.58□□□□□ -1.52
LHX3Q9UBR4 DIAPH3-208ENST00000498416 2249 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
LHX3Q9UBR4 SPINK14-201ENST00000356972 294 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
LHX3Q9UBR4 RNA5SP319-201ENST00000362768 119 ntBASIC5.58□□□□□ -1.52
LHX3Q9UBR4 GPR52-201ENST00000367685 1088 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
LHX3Q9UBR4 RIMKLBP2-201ENST00000424737 654 ntBASIC5.58□□□□□ -1.52
LHX3Q9UBR4 RPL7P56-201ENST00000429441 717 ntBASIC5.58□□□□□ -1.52
LHX3Q9UBR4 AC073062.1-201ENST00000434509 455 ntTSL 5 BASIC5.58□□□□□ -1.52
LHX3Q9UBR4 AC012594.1-271ENST00000438635 736 ntTSL 3 BASIC5.58□□□□□ -1.52
LHX3Q9UBR4 LINC02210-201ENST00000444561 288 ntBASIC5.58□□□□□ -1.52
LHX3Q9UBR4 LINC01344-202ENST00000449842 571 ntTSL 3 BASIC5.58□□□□□ -1.52
LHX3Q9UBR4 AL590764.1-201ENST00000450860 726 ntTSL 3 BASIC5.58□□□□□ -1.52
LHX3Q9UBR4 AL358612.1-201ENST00000452911 481 ntTSL 3 BASIC5.58□□□□□ -1.52
LHX3Q9UBR4 BIRC6-AS1-201ENST00000455572 697 ntTSL 3 BASIC5.58□□□□□ -1.52
LHX3Q9UBR4 AC034195.1-203ENST00000455703 728 ntTSL 2 BASIC5.58□□□□□ -1.52
LHX3Q9UBR4 LINC02397-201ENST00000504409 10626 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
LHX3Q9UBR4 ERVH-1-201ENST00000507666 639 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
LHX3Q9UBR4 AC009623.1-201ENST00000517964 1131 ntTSL 2 BASIC5.58□□□□□ -1.52
LHX3Q9UBR4 AC078878.1-201ENST00000539832 958 ntBASIC5.58□□□□□ -1.52
LHX3Q9UBR4 AC008149.1-201ENST00000551844 525 ntTSL 4 BASIC5.58□□□□□ -1.52
LHX3Q9UBR4 POU1F1-203ENST00000560656 647 ntTSL 5 BASIC5.58□□□□□ -1.52
LHX3Q9UBR4 SPINK14-202ENST00000562793 157 ntTSL 5 BASIC5.58□□□□□ -1.52
LHX3Q9UBR4 OCLM-201ENST00000574641 884 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
LHX3Q9UBR4 AP005403.1-201ENST00000579720 229 ntBASIC5.58□□□□□ -1.52
LHX3Q9UBR4 RN7SL753P-201ENST00000581238 290 ntBASIC5.58□□□□□ -1.52
LHX3Q9UBR4 AP005242.1-201ENST00000583946 467 ntTSL 3 BASIC5.58□□□□□ -1.52
LHX3Q9UBR4 AP001542.1-201ENST00000591314 200 ntBASIC5.58□□□□□ -1.52
LHX3Q9UBR4 SMIM24-204ENST00000591708 660 ntAPPRIS ALT2 TSL 2 BASIC5.58□□□□□ -1.52
LHX3Q9UBR4 GMFG-212ENST00000602185 423 ntTSL 3 BASIC5.58□□□□□ -1.52
LHX3Q9UBR4 AC009237.13-201ENST00000603193 276 ntBASIC5.58□□□□□ -1.52
LHX3Q9UBR4 SUGT1P3-202ENST00000604259 383 ntBASIC5.58□□□□□ -1.52
LHX3Q9UBR4 AC112211.1-201ENST00000607832 305 ntTSL 3 BASIC5.58□□□□□ -1.52
LHX3Q9UBR4 AC000068.2-201ENST00000608816 460 ntBASIC5.58□□□□□ -1.52
LHX3Q9UBR4 AC079395.2-201ENST00000610982 737 ntBASIC5.58□□□□□ -1.52
LHX3Q9UBR4 AL355480.1-201ENST00000629041 99 ntBASIC5.58□□□□□ -1.52
LHX3Q9UBR4 NEK3-211ENST00000629912 141 ntTSL 5 BASIC5.58□□□□□ -1.52
LHX3Q9UBR4 AC079776.5-201ENST00000641920 211 ntBASIC5.58□□□□□ -1.52
LHX3Q9UBR4 UGT2A1-205ENST00000512704 2519 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
LHX3Q9UBR4 TYW3-203ENST00000457880 3335 ntTSL 2 BASIC5.58□□□□□ -1.52
LHX3Q9UBR4 AC004076.2-201ENST00000620532 3323 ntBASIC5.58□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 72.5 ms