Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 AC073333.1-201ENST00000418907 648 ntTSL 3 BASIC1.72□□□□□ -2.13
SYNE1Q8NF91 MIR646HG-202ENST00000426753 651 ntTSL 2 BASIC1.72□□□□□ -2.13
SYNE1Q8NF91 AL356981.1-201ENST00000454879 684 ntBASIC1.72□□□□□ -2.13
SYNE1Q8NF91 BTF3P13-201ENST00000513224 490 ntBASIC1.72□□□□□ -2.13
SYNE1Q8NF91 MAL2-208ENST00000523307 556 ntTSL 4 BASIC1.72□□□□□ -2.13
SYNE1Q8NF91 MRPS16P1-201ENST00000523462 412 ntBASIC1.72□□□□□ -2.13
SYNE1Q8NF91 AC007569.1-202ENST00000547282 303 ntTSL 3 BASIC1.72□□□□□ -2.13
SYNE1Q8NF91 AC023906.4-201ENST00000557898 895 ntTSL 3 BASIC1.72□□□□□ -2.13
SYNE1Q8NF91 AC000068.2-201ENST00000608816 460 ntBASIC1.72□□□□□ -2.13
SYNE1Q8NF91 AC245389.2-201ENST00000616023 576 ntBASIC1.72□□□□□ -2.13
SYNE1Q8NF91 AC242843.1-201ENST00000618702 573 ntBASIC1.72□□□□□ -2.13
SYNE1Q8NF91 AC097634.1-201ENST00000604491 2467 ntBASIC1.72□□□□□ -2.13
SYNE1Q8NF91 RXFP1-206ENST00000460056 2735 ntTSL 2 BASIC1.72□□□□□ -2.13
SYNE1Q8NF91 ZNF566-202ENST00000424129 2644 ntAPPRIS P3 TSL 2 BASIC1.72□□□□□ -2.13
SYNE1Q8NF91 PUS10-203ENST00000407787 1820 ntAPPRIS P1 TSL 2 BASIC1.72□□□□□ -2.13
SYNE1Q8NF91 CR383656.5-201ENST00000547616 1340 ntBASIC1.72□□□□□ -2.13
SYNE1Q8NF91 MTERF1-203ENST00000419292 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC1.72□□□□□ -2.13
SYNE1Q8NF91 OR4E1-202ENST00000641792 3742 ntAPPRIS P5 BASIC1.72□□□□□ -2.13
SYNE1Q8NF91 RAB28P1-201ENST00000411517 641 ntBASIC1.72□□□□□ -2.13
SYNE1Q8NF91 RPS4XP5-201ENST00000419038 768 ntBASIC1.72□□□□□ -2.13
SYNE1Q8NF91 AL354794.1-201ENST00000442103 516 ntTSL 3 BASIC1.72□□□□□ -2.13
SYNE1Q8NF91 AC115989.1-202ENST00000452153 1150 ntTSL 2 BASIC1.72□□□□□ -2.13
SYNE1Q8NF91 STRADBP1-201ENST00000478954 1281 ntBASIC1.72□□□□□ -2.13
SYNE1Q8NF91 OR7E157P-201ENST00000494376 911 ntBASIC1.72□□□□□ -2.13
SYNE1Q8NF91 AC090592.1-202ENST00000533049 568 ntTSL 4 BASIC1.72□□□□□ -2.13
SYNE1Q8NF91 LINC02404-201ENST00000546710 1188 ntTSL 5 BASIC1.72□□□□□ -2.13
SYNE1Q8NF91 APPL2-203ENST00000546731 684 ntTSL 2 BASIC1.72□□□□□ -2.13
SYNE1Q8NF91 LINC02451-201ENST00000546982 565 ntTSL 4 BASIC1.72□□□□□ -2.13
SYNE1Q8NF91 SLC25A3P1-203ENST00000563752 460 ntTSL 2 BASIC1.72□□□□□ -2.13
SYNE1Q8NF91 OR1F2P-201ENST00000570470 933 ntBASIC1.72□□□□□ -2.13
SYNE1Q8NF91 AC109583.2-201ENST00000617367 129 ntBASIC1.72□□□□□ -2.13
SYNE1Q8NF91 AC021422.1-201ENST00000621212 473 ntBASIC1.72□□□□□ -2.13
SYNE1Q8NF91 AC012254.5-201ENST00000623573 478 ntBASIC1.72□□□□□ -2.13
SYNE1Q8NF91 WDR64-201ENST00000366552 4371 ntAPPRIS P1 TSL 5 BASIC1.72□□□□□ -2.13
SYNE1Q8NF91 MAGEB16-204ENST00000399989 1818 ntAPPRIS P2 TSL 5 BASIC1.72□□□□□ -2.13
SYNE1Q8NF91 ETF1-203ENST00000503014 1736 ntTSL 2 BASIC1.72□□□□□ -2.13
SYNE1Q8NF91 AC087258.1-203ENST00000545400 1629 ntTSL 2 BASIC1.72□□□□□ -2.13
SYNE1Q8NF91 ARHGAP5-206ENST00000539826 4881 ntAPPRIS P3 TSL 1 (best) BASIC1.72□□□□□ -2.13
SYNE1Q8NF91 ZBTB21-204ENST00000398505 6846 ntTSL 1 (best) BASIC1.72□□□□□ -2.13
SYNE1Q8NF91 SLC35A5-201ENST00000261034 2444 ntTSL 5 BASIC1.72□□□□□ -2.13
SYNE1Q8NF91 TAS2R8-201ENST00000240615 1243 ntAPPRIS P1 BASIC1.72□□□□□ -2.13
SYNE1Q8NF91 RNA5SP507-201ENST00000363603 121 ntBASIC1.72□□□□□ -2.13
SYNE1Q8NF91 SNORA74A-201ENST00000364089 198 ntBASIC1.72□□□□□ -2.13
SYNE1Q8NF91 AC015977.1-201ENST00000418887 292 ntBASIC1.72□□□□□ -2.13
SYNE1Q8NF91 AC108075.1-201ENST00000424692 529 ntBASIC1.72□□□□□ -2.13
SYNE1Q8NF91 AL121957.1-202ENST00000437040 329 ntTSL 3 BASIC1.72□□□□□ -2.13
SYNE1Q8NF91 AL137076.1-201ENST00000441046 551 ntTSL 2 BASIC1.72□□□□□ -2.13
SYNE1Q8NF91 RN7SL172P-201ENST00000460535 303 ntBASIC1.72□□□□□ -2.13
SYNE1Q8NF91 RPS21P4-201ENST00000487122 248 ntBASIC1.72□□□□□ -2.13
SYNE1Q8NF91 PFDN1-207ENST00000524074 395 ntTSL 5 BASIC1.72□□□□□ -2.13
SYNE1Q8NF91 AL137246.2-201ENST00000613439 662 ntBASIC1.72□□□□□ -2.13
SYNE1Q8NF91 TCL6_3.1-201ENST00000619064 137 ntBASIC1.72□□□□□ -2.13
SYNE1Q8NF91 AC004158.1-201ENST00000564508 4319 ntBASIC1.72□□□□□ -2.13
SYNE1Q8NF91 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC1.72□□□□□ -2.13
SYNE1Q8NF91 TEDDM1-201ENST00000367565 2500 ntAPPRIS P1 BASIC1.72□□□□□ -2.13
SYNE1Q8NF91 IL23R-201ENST00000347310 2912 ntAPPRIS P1 TSL 1 (best) BASIC1.72□□□□□ -2.13
SYNE1Q8NF91 ARHGAP20-204ENST00000528829 5880 ntAPPRIS ALT2 TSL 1 (best) BASIC1.72□□□□□ -2.13
SYNE1Q8NF91 CYP4Z2P-201ENST00000423332 1512 ntBASIC1.72□□□□□ -2.13
SYNE1Q8NF91 RNA5SP183-201ENST00000362452 119 ntBASIC1.72□□□□□ -2.13
SYNE1Q8NF91 HIST1H3PS1-201ENST00000404612 417 ntBASIC1.72□□□□□ -2.13
SYNE1Q8NF91 AC092675.1-201ENST00000409490 561 ntTSL 4 BASIC1.72□□□□□ -2.13
SYNE1Q8NF91 RPL23AP18-201ENST00000416139 468 ntBASIC1.72□□□□□ -2.13
SYNE1Q8NF91 FABP5P2-201ENST00000439042 408 ntBASIC1.72□□□□□ -2.13
SYNE1Q8NF91 AC073288.1-201ENST00000466291 469 ntTSL 3 BASIC1.72□□□□□ -2.13
SYNE1Q8NF91 RN7SL570P-201ENST00000484405 292 ntBASIC1.72□□□□□ -2.13
SYNE1Q8NF91 AC093270.2-201ENST00000486157 792 ntBASIC1.72□□□□□ -2.13
SYNE1Q8NF91 AC025263.2-201ENST00000550437 548 ntAPPRIS P1 TSL 5 BASIC1.72□□□□□ -2.13
SYNE1Q8NF91 AC087385.3-201ENST00000620477 187 ntBASIC1.72□□□□□ -2.13
SYNE1Q8NF91 PCDHB2-203ENST00000624874 565 ntTSL 5 BASIC1.72□□□□□ -2.13
SYNE1Q8NF91 INTS2-202ENST00000444766 5878 ntTSL 1 (best) BASIC1.72□□□□□ -2.13
SYNE1Q8NF91 GDA-209ENST00000545168 5362 ntTSL 2 BASIC1.72□□□□□ -2.13
SYNE1Q8NF91 ENPP2-207ENST00000522167 1695 ntTSL 2 BASIC1.72□□□□□ -2.13
SYNE1Q8NF91 CTSS-201ENST00000368985 4107 ntAPPRIS P1 TSL 1 (best) BASIC1.72□□□□□ -2.13
SYNE1Q8NF91 OR9G1-202ENST00000642097 3611 ntAPPRIS P1 BASIC1.72□□□□□ -2.13
SYNE1Q8NF91 LYVE1-201ENST00000256178 3273 ntAPPRIS P1 TSL 1 (best) BASIC1.72□□□□□ -2.13
SYNE1Q8NF91 SRPK2-201ENST00000357311 3700 ntAPPRIS P3 TSL 1 (best) BASIC1.72□□□□□ -2.13
SYNE1Q8NF91 ZNF347-202ENST00000452676 4553 ntAPPRIS ALT2 TSL 2 BASIC1.72□□□□□ -2.13
SYNE1Q8NF91 EDA2R-202ENST00000374719 3418 ntAPPRIS P3 TSL 1 (best) BASIC1.72□□□□□ -2.13
SYNE1Q8NF91 AL354696.2-201ENST00000619407 1910 ntTSL 2 BASIC1.72□□□□□ -2.13
SYNE1Q8NF91 MRRFP1-201ENST00000435941 1675 ntBASIC1.72□□□□□ -2.13
SYNE1Q8NF91 MIR550A3-201ENST00000390735 95 ntBASIC1.72□□□□□ -2.13
SYNE1Q8NF91 AC116036.1-201ENST00000412199 367 ntBASIC1.72□□□□□ -2.13
SYNE1Q8NF91 AL353626.3-201ENST00000413399 657 ntBASIC1.72□□□□□ -2.13
SYNE1Q8NF91 LINC00502-201ENST00000423621 445 ntTSL 3 BASIC1.72□□□□□ -2.13
SYNE1Q8NF91 AL353148.1-202ENST00000424701 551 ntTSL 2 BASIC1.72□□□□□ -2.13
SYNE1Q8NF91 AL445665.1-202ENST00000452436 324 ntBASIC1.72□□□□□ -2.13
SYNE1Q8NF91 RPS29P33-201ENST00000456717 146 ntBASIC1.72□□□□□ -2.13
SYNE1Q8NF91 RPL35AP28-201ENST00000459730 331 ntBASIC1.72□□□□□ -2.13
SYNE1Q8NF91 CREM-230ENST00000474931 626 ntTSL 2 BASIC1.72□□□□□ -2.13
SYNE1Q8NF91 AC087672.1-201ENST00000479876 766 ntBASIC1.72□□□□□ -2.13
SYNE1Q8NF91 AC017091.1-202ENST00000510941 504 ntTSL 3 BASIC1.72□□□□□ -2.13
SYNE1Q8NF91 AC093305.1-201ENST00000514105 522 ntTSL 5 BASIC1.72□□□□□ -2.13
SYNE1Q8NF91 IGLV3-24-201ENST00000517477 197 ntBASIC1.72□□□□□ -2.13
SYNE1Q8NF91 AC139365.2-201ENST00000517972 253 ntBASIC1.72□□□□□ -2.13
SYNE1Q8NF91 DAOA-212ENST00000640578 378 ntAPPRIS ALT2 TSL 5 BASIC1.72□□□□□ -2.13
SYNE1Q8NF91 PKIA-201ENST00000352966 1736 ntAPPRIS P1 TSL 2 BASIC1.72□□□□□ -2.13
SYNE1Q8NF91 FTO-206ENST00000471389 11766 ntAPPRIS P1 TSL 1 (best) BASIC1.72□□□□□ -2.13
SYNE1Q8NF91 ANKRD36B-202ENST00000359901 4297 ntAPPRIS P1 TSL 5 BASIC1.72□□□□□ -2.13
SYNE1Q8NF91 SLFN12-201ENST00000304905 2383 ntAPPRIS P1 TSL 1 (best) BASIC1.72□□□□□ -2.13
SYNE1Q8NF91 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC1.72□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 79.2 ms