Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AC092601.1-201ENST00000444526 383 ntBASIC4.11□□□□□ -1.75
FOXA3P55318 CCDC17-203ENST00000445048 443 ntAPPRIS ALT2 TSL 1 (best) BASIC4.11□□□□□ -1.75
FOXA3P55318 AL358876.1-201ENST00000453364 1075 ntBASIC4.11□□□□□ -1.75
FOXA3P55318 RPL31P11-202ENST00000454082 372 ntBASIC4.11□□□□□ -1.75
FOXA3P55318 TREML3P-201ENST00000457327 501 ntBASIC4.11□□□□□ -1.75
FOXA3P55318 AC063955.1-201ENST00000462872 685 ntBASIC4.11□□□□□ -1.75
FOXA3P55318 PLSCR5-203ENST00000492200 1058 ntAPPRIS P1 TSL 5 BASIC4.11□□□□□ -1.75
FOXA3P55318 AC117500.1-201ENST00000497352 755 ntBASIC4.11□□□□□ -1.75
FOXA3P55318 IGBP1P4-201ENST00000503202 879 ntBASIC4.11□□□□□ -1.75
FOXA3P55318 AC073648.3-201ENST00000504939 925 ntBASIC4.11□□□□□ -1.75
FOXA3P55318 AC131094.1-201ENST00000506984 490 ntTSL 2 BASIC4.11□□□□□ -1.75
FOXA3P55318 LINC02383-201ENST00000508563 582 ntTSL 3 BASIC4.11□□□□□ -1.75
FOXA3P55318 CENPK-210ENST00000510354 1124 ntTSL 5 BASIC4.11□□□□□ -1.75
FOXA3P55318 AC112242.1-201ENST00000515805 406 ntTSL 3 BASIC4.11□□□□□ -1.75
FOXA3P55318 MAL2-207ENST00000522828 603 ntTSL 3 BASIC4.11□□□□□ -1.75
FOXA3P55318 OR52B2-201ENST00000530810 1079 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
FOXA3P55318 AP002370.2-201ENST00000531424 545 ntTSL 3 BASIC4.11□□□□□ -1.75
FOXA3P55318 AC090023.2-201ENST00000540875 545 ntTSL 3 BASIC4.11□□□□□ -1.75
FOXA3P55318 AC046158.2-201ENST00000568764 707 ntTSL 3 BASIC4.11□□□□□ -1.75
FOXA3P55318 CASC22-201ENST00000569713 386 ntTSL 5 BASIC4.11□□□□□ -1.75
FOXA3P55318 AC010401.2-202ENST00000570663 396 ntTSL 2 BASIC4.11□□□□□ -1.75
FOXA3P55318 AC027796.1-201ENST00000575593 512 ntBASIC4.11□□□□□ -1.75
FOXA3P55318 AC107926.1-201ENST00000581673 621 ntTSL 3 BASIC4.11□□□□□ -1.75
FOXA3P55318 AC025809.1-201ENST00000585336 560 ntTSL 4 BASIC4.11□□□□□ -1.75
FOXA3P55318 MIR212-201ENST00000586026 110 ntBASIC4.11□□□□□ -1.75
FOXA3P55318 ZNF66-203ENST00000594534 757 ntTSL 5 BASIC4.11□□□□□ -1.75
FOXA3P55318 AC011516.1-201ENST00000599129 180 ntTSL 3 BASIC4.11□□□□□ -1.75
FOXA3P55318 AC023206.1-201ENST00000605824 298 ntBASIC4.11□□□□□ -1.75
FOXA3P55318 AC089999.3-201ENST00000622440 577 ntBASIC4.11□□□□□ -1.75
FOXA3P55318 LINC02536-201ENST00000625799 625 ntTSL 3 BASIC4.11□□□□□ -1.75
FOXA3P55318 AC006387.1-201ENST00000626365 671 ntTSL 5 BASIC4.11□□□□□ -1.75
FOXA3P55318 AL357060.1-201ENST00000638039 977 ntTSL 5 BASIC4.11□□□□□ -1.75
FOXA3P55318 SEC31A-201ENST00000264405 3447 ntTSL 2 BASIC4.11□□□□□ -1.75
FOXA3P55318 PTPRO-210ENST00000544244 3978 ntAPPRIS ALT2 TSL 2 BASIC4.11□□□□□ -1.75
FOXA3P55318 LRRC19-201ENST00000380055 3609 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
FOXA3P55318 TBC1D23-201ENST00000344949 3656 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
FOXA3P55318 AC003973.3-201ENST00000624863 2822 ntBASIC4.11□□□□□ -1.75
FOXA3P55318 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC4.11□□□□□ -1.75
FOXA3P55318 CD164-207ENST00000504373 1402 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
FOXA3P55318 FOXN2-203ENST00000616844 1414 ntTSL 5 BASIC4.11□□□□□ -1.75
FOXA3P55318 OR8A1-203ENST00000641670 5709 ntAPPRIS P1 BASIC4.11□□□□□ -1.75
FOXA3P55318 CDC27P2-201ENST00000425026 1922 ntBASIC4.11□□□□□ -1.75
FOXA3P55318 AL731566.1-201ENST00000620490 1937 ntBASIC4.11□□□□□ -1.75
FOXA3P55318 PDE10A-203ENST00000539869 4401 ntAPPRIS ALT2 TSL 1 (best) BASIC4.11□□□□□ -1.75
FOXA3P55318 OSBPL9P1-201ENST00000604744 1469 ntBASIC4.11□□□□□ -1.75
FOXA3P55318 CEP164P1-202ENST00000456938 2472 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
FOXA3P55318 AP002518.1-201ENST00000534904 3837 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
FOXA3P55318 STAMBPL1-202ENST00000371924 2208 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
FOXA3P55318 ADGRL2-206ENST00000370721 5023 ntTSL 5 BASIC4.1□□□□□ -1.75
FOXA3P55318 CDY11P-201ENST00000447168 1651 ntBASIC4.1□□□□□ -1.75
FOXA3P55318 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC4.1□□□□□ -1.75
FOXA3P55318 DLX6-AS1-201ENST00000430027 15364 ntTSL 2 BASIC4.1□□□□□ -1.75
FOXA3P55318 HYDIN-201ENST00000288168 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC4.1□□□□□ -1.75
FOXA3P55318 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC4.1□□□□□ -1.75
FOXA3P55318 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
FOXA3P55318 SSX3-201ENST00000298396 1232 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
FOXA3P55318 GAPDHP24-201ENST00000328713 983 ntBASIC4.1□□□□□ -1.75
FOXA3P55318 MAX-203ENST00000341653 330 ntTSL 2 BASIC4.1□□□□□ -1.75
FOXA3P55318 DPH5-201ENST00000342173 1143 ntAPPRIS ALT1 TSL 1 (best) BASIC4.1□□□□□ -1.75
FOXA3P55318 S100A5-201ENST00000368717 506 ntAPPRIS P1 TSL 3 BASIC4.1□□□□□ -1.75
FOXA3P55318 PSMD10-206ENST00000372296 878 ntTSL 5 BASIC4.1□□□□□ -1.75
FOXA3P55318 CD52-201ENST00000374213 468 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
FOXA3P55318 UNC50-203ENST00000409347 1276 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
FOXA3P55318 ATF2-205ENST00000409499 801 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
FOXA3P55318 RPL12P9-201ENST00000412942 488 ntBASIC4.1□□□□□ -1.75
FOXA3P55318 CBX1P3-201ENST00000413296 527 ntBASIC4.1□□□□□ -1.75
FOXA3P55318 RPSAP35-201ENST00000413753 818 ntBASIC4.1□□□□□ -1.75
FOXA3P55318 FAM183DP-201ENST00000421987 399 ntBASIC4.1□□□□□ -1.75
FOXA3P55318 AC104333.2-201ENST00000422630 192 ntBASIC4.1□□□□□ -1.75
FOXA3P55318 AC007161.1-204ENST00000423039 460 ntBASIC4.1□□□□□ -1.75
FOXA3P55318 VN1R20P-201ENST00000425215 966 ntBASIC4.1□□□□□ -1.75
FOXA3P55318 NPM1P22-201ENST00000427761 952 ntBASIC4.1□□□□□ -1.75
FOXA3P55318 AL807757.1-201ENST00000437846 424 ntTSL 3 BASIC4.1□□□□□ -1.75
FOXA3P55318 AL356421.2-201ENST00000446733 197 ntTSL 3 BASIC4.1□□□□□ -1.75
FOXA3P55318 AC009518.1-201ENST00000452219 559 ntTSL 4 BASIC4.1□□□□□ -1.75
FOXA3P55318 EIF3LP2-201ENST00000457262 807 ntBASIC4.1□□□□□ -1.75
FOXA3P55318 TPT1P1-201ENST00000458495 518 ntBASIC4.1□□□□□ -1.75
FOXA3P55318 TFP1-201ENST00000460564 572 ntTSL 4 BASIC4.1□□□□□ -1.75
FOXA3P55318 RPS4XP17-201ENST00000479057 754 ntBASIC4.1□□□□□ -1.75
FOXA3P55318 TFP1-203ENST00000490470 561 ntTSL 4 BASIC4.1□□□□□ -1.75
FOXA3P55318 LINC02506-201ENST00000513211 734 ntTSL 3 BASIC4.1□□□□□ -1.75
FOXA3P55318 AC069272.1-201ENST00000514843 680 ntTSL 3 BASIC4.1□□□□□ -1.75
FOXA3P55318 HMGN1P9-201ENST00000515212 298 ntBASIC4.1□□□□□ -1.75
FOXA3P55318 AP001961.1-201ENST00000515782 526 ntTSL 3 BASIC4.1□□□□□ -1.75
FOXA3P55318 AC022360.1-201ENST00000521058 340 ntBASIC4.1□□□□□ -1.75
FOXA3P55318 AC013549.3-201ENST00000528792 419 ntTSL 3 BASIC4.1□□□□□ -1.75
FOXA3P55318 CASP5-209ENST00000531367 879 ntTSL 5 BASIC4.1□□□□□ -1.75
FOXA3P55318 LINC02402-201ENST00000550337 1212 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
FOXA3P55318 AL163195.3-202ENST00000555283 578 ntAPPRIS P1 TSL 4 BASIC4.1□□□□□ -1.75
FOXA3P55318 MED31-202ENST00000574128 619 ntTSL 3 BASIC4.1□□□□□ -1.75
FOXA3P55318 ERVK-28-203ENST00000600419 457 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
FOXA3P55318 XIST-210ENST00000602863 775 ntTSL 3 BASIC4.1□□□□□ -1.75
FOXA3P55318 AL049829.3-202ENST00000604278 711 ntBASIC4.1□□□□□ -1.75
FOXA3P55318 MILR1-203ENST00000615220 1196 ntAPPRIS P3 TSL 2 BASIC4.1□□□□□ -1.75
FOXA3P55318 AC015574.1-202ENST00000616588 456 ntTSL 5 BASIC4.1□□□□□ -1.75
FOXA3P55318 SPTY2D1-AS1-206ENST00000636011 853 ntAPPRIS ALT2 TSL 5 BASIC4.1□□□□□ -1.75
FOXA3P55318 PHACTR2P1-202ENST00000636592 773 ntTSL 5 BASIC4.1□□□□□ -1.75
FOXA3P55318 EYA1-205ENST00000388742 3907 ntAPPRIS P3 TSL 1 (best) BASIC4.1□□□□□ -1.75
FOXA3P55318 PLEKHA5-216ENST00000540972 1954 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
FOXA3P55318 ALS2CR12-203ENST00000405148 2013 ntAPPRIS P3 TSL 5 BASIC4.1□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 68.3 ms