Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 CDY8P-201ENST00000428380 1279 ntBASIC5.26□□□□□ -1.57
SDC1P18827 SPATA13-AS1-201ENST00000430733 433 ntTSL 3 BASIC5.26□□□□□ -1.57
SDC1P18827 CDY20P-201ENST00000447528 1279 ntBASIC5.26□□□□□ -1.57
SDC1P18827 WDR11-AS1-201ENST00000451706 1108 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
SDC1P18827 GIMAP2-202ENST00000474605 309 ntTSL 3 BASIC5.26□□□□□ -1.57
SDC1P18827 RSRC1-207ENST00000475278 1195 ntTSL 5 BASIC5.26□□□□□ -1.57
SDC1P18827 AC008695.1-201ENST00000514667 6393 ntAPPRIS P1 TSL 2 BASIC5.26□□□□□ -1.57
SDC1P18827 RNU6-615P-201ENST00000516065 106 ntBASIC5.26□□□□□ -1.57
SDC1P18827 AL135838.1-201ENST00000556080 235 ntTSL 3 BASIC5.26□□□□□ -1.57
SDC1P18827 OOSP1P2-201ENST00000579644 351 ntBASIC5.26□□□□□ -1.57
SDC1P18827 AC024563.1-201ENST00000601860 618 ntTSL 2 BASIC5.26□□□□□ -1.57
SDC1P18827 AC108738.1-201ENST00000603703 237 ntBASIC5.26□□□□□ -1.57
SDC1P18827 CCL4L2-217ENST00000620250 667 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
SDC1P18827 AJ239318.1-201ENST00000624445 607 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
SDC1P18827 AC129915.3-201ENST00000634128 948 ntBASIC5.26□□□□□ -1.57
SDC1P18827 RFC1-217ENST00000639695 867 ntTSL 5 BASIC5.26□□□□□ -1.57
SDC1P18827 OR2A7-202ENST00000641841 2062 ntAPPRIS P1 BASIC5.26□□□□□ -1.57
SDC1P18827 DBT-202ENST00000370132 10799 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
SDC1P18827 C4orf36-203ENST00000473559 2306 ntAPPRIS P1 TSL 2 BASIC5.26□□□□□ -1.57
SDC1P18827 OR5AQ1P-203ENST00000641818 1529 ntBASIC5.26□□□□□ -1.57
SDC1P18827 AL121839.2-201ENST00000565058 6943 ntBASIC5.26□□□□□ -1.57
SDC1P18827 ZNF347-201ENST00000334197 7960 ntAPPRIS P3 TSL 1 (best) BASIC5.26□□□□□ -1.57
SDC1P18827 ZNF33A-202ENST00000374618 6122 ntTSL 4 BASIC5.26□□□□□ -1.57
SDC1P18827 PCDH11X-202ENST00000361655 4126 ntAPPRIS ALT2 TSL 1 (best) BASIC5.26□□□□□ -1.57
SDC1P18827 ADAMDEC1-204ENST00000522298 2044 ntAPPRIS ALT2 TSL 2 BASIC5.26□□□□□ -1.57
SDC1P18827 UGT2A1-205ENST00000512704 2519 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
SDC1P18827 LINC01204-202ENST00000435394 2214 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
SDC1P18827 GART-205ENST00000381839 3469 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
SDC1P18827 NPM1-203ENST00000393820 1598 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
SDC1P18827 AL132656.3-201ENST00000606384 1595 ntBASIC5.25□□□□□ -1.57
SDC1P18827 MAP3K7-203ENST00000369327 4558 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
SDC1P18827 OR2J3-202ENST00000641151 3297 ntAPPRIS P1 BASIC5.25□□□□□ -1.57
SDC1P18827 AC099329.2-203ENST00000471537 3605 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
SDC1P18827 OR56A4-204ENST00000641835 3613 ntAPPRIS P1 BASIC5.25□□□□□ -1.57
SDC1P18827 METTL5-202ENST00000308099 629 ntTSL 3 BASIC5.25□□□□□ -1.57
SDC1P18827 RN7SKP69-201ENST00000365390 305 ntBASIC5.25□□□□□ -1.57
SDC1P18827 RN7SKP187-201ENST00000365536 330 ntBASIC5.25□□□□□ -1.57
SDC1P18827 SPRR2G-201ENST00000368748 568 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
SDC1P18827 PEX12P1-201ENST00000400284 1048 ntBASIC5.25□□□□□ -1.57
SDC1P18827 RPS3AP2-201ENST00000407190 754 ntBASIC5.25□□□□□ -1.57
SDC1P18827 AC113412.1-201ENST00000425840 504 ntBASIC5.25□□□□□ -1.57
SDC1P18827 AP001476.3-201ENST00000429512 415 ntTSL 3 BASIC5.25□□□□□ -1.57
SDC1P18827 AC003991.1-210ENST00000434733 1048 ntTSL 3 BASIC5.25□□□□□ -1.57
SDC1P18827 AC017074.2-201ENST00000439382 607 ntTSL 2 BASIC5.25□□□□□ -1.57
SDC1P18827 AP000547.1-201ENST00000454360 617 ntBASIC5.25□□□□□ -1.57
SDC1P18827 AC011476.1-201ENST00000466725 307 ntBASIC5.25□□□□□ -1.57
SDC1P18827 LINC02271-202ENST00000506379 596 ntTSL 4 BASIC5.25□□□□□ -1.57
SDC1P18827 SNORA70.11-201ENST00000515987 138 ntBASIC5.25□□□□□ -1.57
SDC1P18827 SNORA70.13-201ENST00000516116 138 ntBASIC5.25□□□□□ -1.57
SDC1P18827 RNA5SP271-201ENST00000516700 88 ntBASIC5.25□□□□□ -1.57
SDC1P18827 AC084855.1-201ENST00000528696 572 ntTSL 2 BASIC5.25□□□□□ -1.57
SDC1P18827 RERGL-203ENST00000538724 973 ntAPPRIS P1 TSL 2 BASIC5.25□□□□□ -1.57
SDC1P18827 GPRC5D-AS1-208ENST00000545914 566 ntTSL 3 BASIC5.25□□□□□ -1.57
SDC1P18827 LINC02293-202ENST00000548385 358 ntTSL 3 BASIC5.25□□□□□ -1.57
SDC1P18827 GNG2-208ENST00000554875 430 ntTSL 5 BASIC5.25□□□□□ -1.57
SDC1P18827 AL161752.1-201ENST00000557721 263 ntTSL 2 BASIC5.25□□□□□ -1.57
SDC1P18827 AC015727.1-201ENST00000572792 512 ntTSL 5 BASIC5.25□□□□□ -1.57
SDC1P18827 AC027216.1-201ENST00000577726 685 ntBASIC5.25□□□□□ -1.57
SDC1P18827 TTN-AS1-226ENST00000588716 604 ntTSL 5 BASIC5.25□□□□□ -1.57
SDC1P18827 AC067773.1-201ENST00000603284 1094 ntBASIC5.25□□□□□ -1.57
SDC1P18827 AC105265.3-202ENST00000610188 459 ntTSL 5 BASIC5.25□□□□□ -1.57
SDC1P18827 LINC02342-201ENST00000627910 461 ntTSL 5 BASIC5.25□□□□□ -1.57
SDC1P18827 AL357060.1-201ENST00000638039 977 ntTSL 5 BASIC5.25□□□□□ -1.57
SDC1P18827 AC092375.1-202ENST00000639452 404 ntTSL 3 BASIC5.25□□□□□ -1.57
SDC1P18827 MUC12-206ENST00000536621 16321 ntAPPRIS P2 TSL 5 BASIC5.25□□□□□ -1.57
SDC1P18827 LINC02401-201ENST00000550185 3059 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
SDC1P18827 KCNMB2-210ENST00000617329 2214 ntTSL 2 BASIC5.25□□□□□ -1.57
SDC1P18827 C1orf112-201ENST00000286031 4355 ntAPPRIS P3 TSL 1 (best) BASIC5.25□□□□□ -1.57
SDC1P18827 RMST-209ENST00000639542 3269 ntTSL 5 BASIC5.25□□□□□ -1.57
SDC1P18827 NDUFS1-207ENST00000455934 3361 ntTSL 2 BASIC5.25□□□□□ -1.57
SDC1P18827 AL360270.2-201ENST00000562952 5985 ntBASIC5.25□□□□□ -1.57
SDC1P18827 TMEM68-209ENST00000521229 2400 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
SDC1P18827 AC079601.1-201ENST00000547824 2791 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
SDC1P18827 ZNF611-201ENST00000319783 3153 ntAPPRIS P1 TSL 2 BASIC5.24□□□□□ -1.57
SDC1P18827 AC003973.3-201ENST00000624863 2822 ntBASIC5.24□□□□□ -1.57
SDC1P18827 TRPC4-201ENST00000338947 2912 ntTSL 5 BASIC5.24□□□□□ -1.57
SDC1P18827 RALGAPA1P1-201ENST00000443361 6232 ntBASIC5.24□□□□□ -1.57
SDC1P18827 GAPT-202ENST00000396776 3016 ntAPPRIS P1 TSL 2 BASIC5.24□□□□□ -1.57
SDC1P18827 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
SDC1P18827 FOXN2-203ENST00000616844 1414 ntTSL 5 BASIC5.24□□□□□ -1.57
SDC1P18827 SAMSN1-203ENST00000400566 1888 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
SDC1P18827 IBTK-206ENST00000503631 3560 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
SDC1P18827 MGAM2-201ENST00000477922 7867 ntAPPRIS P1 TSL 5 BASIC5.24□□□□□ -1.57
SDC1P18827 DST-205ENST00000370765 8999 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
SDC1P18827 IFIT1B-201ENST00000371809 1972 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
SDC1P18827 LINC01153-201ENST00000429809 2864 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
SDC1P18827 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC5.24□□□□□ -1.57
SDC1P18827 PHACTR2-207ENST00000427704 9531 ntAPPRIS ALT2 TSL 1 (best) BASIC5.24□□□□□ -1.57
SDC1P18827 MUC17-201ENST00000306151 14247 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
SDC1P18827 AC068775.1-202ENST00000538173 1602 ntAPPRIS P1 BASIC5.24□□□□□ -1.57
SDC1P18827 FTO-204ENST00000463855 3056 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
SDC1P18827 AL359538.1-201ENST00000453498 1710 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
SDC1P18827 RNF32-203ENST00000392741 2260 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
SDC1P18827 OR52B3P-201ENST00000314715 928 ntBASIC5.24□□□□□ -1.57
SDC1P18827 OR7E156P-201ENST00000400303 464 ntBASIC5.24□□□□□ -1.57
SDC1P18827 TOMM7-203ENST00000405021 455 ntTSL 2 BASIC5.24□□□□□ -1.57
SDC1P18827 AC017078.1-201ENST00000416146 368 ntBASIC5.24□□□□□ -1.57
SDC1P18827 AL021153.1-201ENST00000427360 308 ntTSL 3 BASIC5.24□□□□□ -1.57
SDC1P18827 OR6D1P-201ENST00000436165 939 ntBASIC5.24□□□□□ -1.57
SDC1P18827 AL137001.1-201ENST00000450212 199 ntTSL 3 BASIC5.24□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 78.5 ms