Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 PSG1-201ENST00000244296 2276 ntAPPRIS P3 TSL 1 (best) BASIC5.59□□□□□ -1.51
TMX2-CTNND1H3BSU7 NOL8-214ENST00000535387 3390 ntAPPRIS ALT2 TSL 5 BASIC5.59□□□□□ -1.51
TMX2-CTNND1H3BSU7 MEIOB-201ENST00000325962 1694 ntAPPRIS P1 TSL 5 BASIC5.59□□□□□ -1.52
TMX2-CTNND1H3BSU7 VNN2-206ENST00000525270 1608 ntAPPRIS ALT2 TSL 2 BASIC5.59□□□□□ -1.52
TMX2-CTNND1H3BSU7 RWDD2A-201ENST00000369724 3744 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.52
TMX2-CTNND1H3BSU7 SMARCE1-208ENST00000474246 2124 ntTSL 1 (best) BASIC5.59□□□□□ -1.52
TMX2-CTNND1H3BSU7 ADGRL3-210ENST00000508946 4758 ntAPPRIS ALT2 TSL 5 BASIC5.59□□□□□ -1.52
TMX2-CTNND1H3BSU7 AC067956.1-201ENST00000414512 2062 ntTSL 1 (best) BASIC5.59□□□□□ -1.52
TMX2-CTNND1H3BSU7 LEPROT-206ENST00000613538 4625 ntTSL 1 (best) BASIC5.59□□□□□ -1.52
TMX2-CTNND1H3BSU7 AASDH-201ENST00000205214 3590 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.52
TMX2-CTNND1H3BSU7 FP236241.1-201ENST00000623374 7632 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
TMX2-CTNND1H3BSU7 CU633967.1-211ENST00000624444 7628 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
TMX2-CTNND1H3BSU7 PTBP3-207ENST00000458258 7995 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
TMX2-CTNND1H3BSU7 SENP1-205ENST00000549595 1932 ntAPPRIS ALT1 TSL 5 BASIC5.58□□□□□ -1.52
TMX2-CTNND1H3BSU7 NAV2-AS5-201ENST00000528726 3307 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
TMX2-CTNND1H3BSU7 CR383656.5-201ENST00000547616 1340 ntBASIC5.58□□□□□ -1.52
TMX2-CTNND1H3BSU7 KLHL28-201ENST00000355081 2177 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
TMX2-CTNND1H3BSU7 RNU1-19P-201ENST00000363306 165 ntBASIC5.58□□□□□ -1.52
TMX2-CTNND1H3BSU7 SNORD1C-201ENST00000363315 78 ntBASIC5.58□□□□□ -1.52
TMX2-CTNND1H3BSU7 U3.7-201ENST00000363668 216 ntBASIC5.58□□□□□ -1.52
TMX2-CTNND1H3BSU7 LINC01620-202ENST00000372910 649 ntTSL 5 BASIC5.58□□□□□ -1.52
TMX2-CTNND1H3BSU7 OR51B6-201ENST00000380219 939 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
TMX2-CTNND1H3BSU7 PEX12P1-201ENST00000400284 1048 ntBASIC5.58□□□□□ -1.52
TMX2-CTNND1H3BSU7 MIR1286-201ENST00000408112 78 ntBASIC5.58□□□□□ -1.52
TMX2-CTNND1H3BSU7 OR6E1P-201ENST00000414424 923 ntBASIC5.58□□□□□ -1.52
TMX2-CTNND1H3BSU7 AL391987.2-201ENST00000421848 492 ntTSL 5 BASIC5.58□□□□□ -1.52
TMX2-CTNND1H3BSU7 MAGI2-AS3-204ENST00000426835 738 ntTSL 3 BASIC5.58□□□□□ -1.52
TMX2-CTNND1H3BSU7 CUBNP2-201ENST00000443534 1139 ntBASIC5.58□□□□□ -1.52
TMX2-CTNND1H3BSU7 AL353804.1-201ENST00000444482 451 ntTSL 5 BASIC5.58□□□□□ -1.52
TMX2-CTNND1H3BSU7 AL606490.1-201ENST00000452266 765 ntBASIC5.58□□□□□ -1.52
TMX2-CTNND1H3BSU7 SDC4P-201ENST00000453285 601 ntBASIC5.58□□□□□ -1.52
TMX2-CTNND1H3BSU7 AC007386.1-201ENST00000455212 582 ntBASIC5.58□□□□□ -1.52
TMX2-CTNND1H3BSU7 LDHBP2-201ENST00000456969 1005 ntBASIC5.58□□□□□ -1.52
TMX2-CTNND1H3BSU7 RN7SL610P-201ENST00000463845 291 ntBASIC5.58□□□□□ -1.52
TMX2-CTNND1H3BSU7 SPRR2F-201ENST00000468739 681 ntAPPRIS P1 TSL 3 BASIC5.58□□□□□ -1.52
TMX2-CTNND1H3BSU7 PFN1P6-201ENST00000476786 399 ntBASIC5.58□□□□□ -1.52
TMX2-CTNND1H3BSU7 C21orf62-202ENST00000479548 964 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
TMX2-CTNND1H3BSU7 PYDC2-201ENST00000518817 294 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
TMX2-CTNND1H3BSU7 AP002383.3-201ENST00000545958 593 ntTSL 4 BASIC5.58□□□□□ -1.52
TMX2-CTNND1H3BSU7 AC004825.1-201ENST00000555068 586 ntBASIC5.58□□□□□ -1.52
TMX2-CTNND1H3BSU7 AC020704.1-201ENST00000559394 454 ntTSL 3 BASIC5.58□□□□□ -1.52
TMX2-CTNND1H3BSU7 RBM22P12-201ENST00000567098 1255 ntBASIC5.58□□□□□ -1.52
TMX2-CTNND1H3BSU7 GARSP1-201ENST00000570895 719 ntBASIC5.58□□□□□ -1.52
TMX2-CTNND1H3BSU7 TXNP4-201ENST00000575018 310 ntBASIC5.58□□□□□ -1.52
TMX2-CTNND1H3BSU7 AL589935.1-223ENST00000587015 808 ntTSL 5 BASIC5.58□□□□□ -1.52
TMX2-CTNND1H3BSU7 AC006504.5-212ENST00000587188 746 ntTSL 3 BASIC5.58□□□□□ -1.52
TMX2-CTNND1H3BSU7 LINC02073-202ENST00000592081 535 ntTSL 4 BASIC5.58□□□□□ -1.52
TMX2-CTNND1H3BSU7 HCG18-243ENST00000602498 327 ntTSL 3 BASIC5.58□□□□□ -1.52
TMX2-CTNND1H3BSU7 OR2L8-201ENST00000623922 939 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
TMX2-CTNND1H3BSU7 HNF4G-203ENST00000396423 4209 ntAPPRIS P3 TSL 1 (best) BASIC5.58□□□□□ -1.52
TMX2-CTNND1H3BSU7 ZNF33B-208ENST00000613419 5843 ntAPPRIS ALT2 TSL 5 BASIC5.58□□□□□ -1.52
TMX2-CTNND1H3BSU7 YES1P1-201ENST00000418510 1628 ntBASIC5.58□□□□□ -1.52
TMX2-CTNND1H3BSU7 CD200R1L-204ENST00000488794 1597 ntAPPRIS ALT2 TSL 5 BASIC5.58□□□□□ -1.52
TMX2-CTNND1H3BSU7 ADAM18-202ENST00000379866 2314 ntAPPRIS ALT2 TSL 1 (best) BASIC5.58□□□□□ -1.52
TMX2-CTNND1H3BSU7 PMCHL2-202ENST00000450213 1917 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
TMX2-CTNND1H3BSU7 ATXN2-215ENST00000542287 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC5.58□□□□□ -1.52
TMX2-CTNND1H3BSU7 PDE5A-203ENST00000394439 6770 ntAPPRIS ALT2 TSL 5 BASIC5.58□□□□□ -1.52
TMX2-CTNND1H3BSU7 ALG10B-201ENST00000308742 10253 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
TMX2-CTNND1H3BSU7 ADGRL2-222ENST00000627151 5789 ntTSL 5 BASIC5.57□□□□□ -1.52
TMX2-CTNND1H3BSU7 AC005261.2-201ENST00000593427 4258 ntBASIC5.57□□□□□ -1.52
TMX2-CTNND1H3BSU7 SMAP1-206ENST00000619054 3150 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
TMX2-CTNND1H3BSU7 AC090220.1-201ENST00000593078 1699 ntBASIC5.57□□□□□ -1.52
TMX2-CTNND1H3BSU7 ORC4-215ENST00000536575 6328 ntTSL 2 BASIC5.57□□□□□ -1.52
TMX2-CTNND1H3BSU7 SEMA3A-201ENST00000265362 8225 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
TMX2-CTNND1H3BSU7 AP001029.2-203ENST00000589795 4910 ntBASIC5.57□□□□□ -1.52
TMX2-CTNND1H3BSU7 OR5AS1-202ENST00000641320 7860 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
TMX2-CTNND1H3BSU7 AC010266.2-201ENST00000564741 3255 ntBASIC5.57□□□□□ -1.52
TMX2-CTNND1H3BSU7 RMRPP5-201ENST00000411156 267 ntBASIC5.57□□□□□ -1.52
TMX2-CTNND1H3BSU7 AC117434.1-201ENST00000419971 836 ntBASIC5.57□□□□□ -1.52
TMX2-CTNND1H3BSU7 LINC00458-201ENST00000423442 1060 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
TMX2-CTNND1H3BSU7 AC074011.1-201ENST00000431376 581 ntTSL 4 BASIC5.57□□□□□ -1.52
TMX2-CTNND1H3BSU7 AL663074.2-201ENST00000440621 479 ntBASIC5.57□□□□□ -1.52
TMX2-CTNND1H3BSU7 GK-IT1-201ENST00000441146 397 ntTSL 5 BASIC5.57□□□□□ -1.52
TMX2-CTNND1H3BSU7 ACA64.4-201ENST00000459070 127 ntBASIC5.57□□□□□ -1.52
TMX2-CTNND1H3BSU7 RPS23P6-201ENST00000466136 431 ntBASIC5.57□□□□□ -1.52
TMX2-CTNND1H3BSU7 RN7SL583P-201ENST00000475692 287 ntBASIC5.57□□□□□ -1.52
TMX2-CTNND1H3BSU7 AC068633.1-202ENST00000476460 458 ntTSL 2 BASIC5.57□□□□□ -1.52
TMX2-CTNND1H3BSU7 RPS3AP15-201ENST00000483874 781 ntBASIC5.57□□□□□ -1.52
TMX2-CTNND1H3BSU7 RN7SL570P-201ENST00000484405 292 ntBASIC5.57□□□□□ -1.52
TMX2-CTNND1H3BSU7 RN7SL30P-201ENST00000488416 306 ntBASIC5.57□□□□□ -1.52
TMX2-CTNND1H3BSU7 TRBV5-2-201ENST00000489095 273 ntBASIC5.57□□□□□ -1.52
TMX2-CTNND1H3BSU7 ATG10-208ENST00000513634 618 ntTSL 2 BASIC5.57□□□□□ -1.52
TMX2-CTNND1H3BSU7 LINC00861-202ENST00000517869 606 ntTSL 5 BASIC5.57□□□□□ -1.52
TMX2-CTNND1H3BSU7 AC021678.3-201ENST00000517893 476 ntBASIC5.57□□□□□ -1.52
TMX2-CTNND1H3BSU7 AC016573.1-201ENST00000523205 539 ntTSL 3 BASIC5.57□□□□□ -1.52
TMX2-CTNND1H3BSU7 ST3GAL3-233ENST00000531816 344 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
TMX2-CTNND1H3BSU7 CREBZF-209ENST00000534224 545 ntTSL 4 BASIC5.57□□□□□ -1.52
TMX2-CTNND1H3BSU7 LDHC-203ENST00000535809 757 ntTSL 5 BASIC5.57□□□□□ -1.52
TMX2-CTNND1H3BSU7 AC009396.2-201ENST00000555954 700 ntTSL 3 BASIC5.57□□□□□ -1.52
TMX2-CTNND1H3BSU7 PINLYP-205ENST00000569031 557 ntTSL 2 BASIC5.57□□□□□ -1.52
TMX2-CTNND1H3BSU7 AC011451.1-201ENST00000591336 405 ntTSL 3 BASIC5.57□□□□□ -1.52
TMX2-CTNND1H3BSU7 AC002069.2-201ENST00000603580 883 ntBASIC5.57□□□□□ -1.52
TMX2-CTNND1H3BSU7 TADA2A-212ENST00000620367 1043 ntTSL 5 BASIC5.57□□□□□ -1.52
TMX2-CTNND1H3BSU7 AP000550.3-201ENST00000637734 379 ntBASIC5.57□□□□□ -1.52
TMX2-CTNND1H3BSU7 AC098679.1-203ENST00000505532 2227 ntTSL 2 BASIC5.57□□□□□ -1.52
TMX2-CTNND1H3BSU7 AL137058.3-201ENST00000624531 3099 ntBASIC5.57□□□□□ -1.52
TMX2-CTNND1H3BSU7 AC006288.1-201ENST00000565320 1463 ntTSL 3 BASIC5.57□□□□□ -1.52
TMX2-CTNND1H3BSU7 OR9Q2-202ENST00000641291 3774 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
TMX2-CTNND1H3BSU7 EYA4-211ENST00000525849 3456 ntTSL 5 BASIC5.57□□□□□ -1.52
TMX2-CTNND1H3BSU7 MTHFD2L-207ENST00000433372 1407 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 69.6 ms