Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 RSL24D1P6-201ENST00000426934 401 ntBASIC6.6□□□□□ -1.35
BRCA1P38398 RPL36AP15-201ENST00000444514 266 ntBASIC6.6□□□□□ -1.35
BRCA1P38398 AC092957.1-201ENST00000473299 570 ntTSL 4 BASIC6.6□□□□□ -1.35
BRCA1P38398 LINC02313-201ENST00000553330 550 ntTSL 2 BASIC6.6□□□□□ -1.35
BRCA1P38398 AP004607.3-201ENST00000530354 3915 ntBASIC6.6□□□□□ -1.35
BRCA1P38398 TTC21B-201ENST00000243344 5482 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
BRCA1P38398 TBC1D32-201ENST00000275159 4431 ntAPPRIS ALT2 TSL 5 BASIC6.6□□□□□ -1.35
BRCA1P38398 AMD1-203ENST00000368882 3059 ntTSL 2 BASIC6.59□□□□□ -1.35
BRCA1P38398 AC016251.2-201ENST00000623393 3089 ntBASIC6.59□□□□□ -1.35
BRCA1P38398 AL353796.1-201ENST00000561542 3241 ntBASIC6.59□□□□□ -1.35
BRCA1P38398 AC107067.1-201ENST00000500009 1654 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
BRCA1P38398 IL21-AS1-201ENST00000417927 3748 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
BRCA1P38398 BPIFC-201ENST00000300399 1980 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
BRCA1P38398 DOCK9-216ENST00000627024 4096 ntTSL 2 BASIC6.59□□□□□ -1.35
BRCA1P38398 ERP27-201ENST00000266397 2096 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
BRCA1P38398 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC6.59□□□□□ -1.35
BRCA1P38398 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC6.59□□□□□ -1.35
BRCA1P38398 NFE2L2-206ENST00000446151 2399 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
BRCA1P38398 SEPT7-AS1-203ENST00000437235 3810 ntTSL 5 BASIC6.59□□□□□ -1.35
BRCA1P38398 ERG-202ENST00000398897 4651 ntTSL 5 BASIC6.59□□□□□ -1.35
BRCA1P38398 POGK-201ENST00000367875 6254 ntAPPRIS P1 TSL 5 BASIC6.59□□□□□ -1.35
BRCA1P38398 CRYAB-201ENST00000227251 848 ntAPPRIS P1 TSL 5 BASIC6.59□□□□□ -1.35
BRCA1P38398 PRLR-201ENST00000231423 1679 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
BRCA1P38398 AC093155.3-201ENST00000370548 2013 ntAPPRIS P1 TSL 2 BASIC6.59□□□□□ -1.35
BRCA1P38398 AC004690.1-201ENST00000418216 328 ntBASIC6.59□□□□□ -1.35
BRCA1P38398 C9orf57-202ENST00000424431 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC6.59□□□□□ -1.35
BRCA1P38398 AC008073.2-201ENST00000428344 792 ntTSL 5 BASIC6.59□□□□□ -1.35
BRCA1P38398 AL139231.1-201ENST00000431001 312 ntTSL 3 BASIC6.59□□□□□ -1.35
BRCA1P38398 AC112498.1-201ENST00000444401 332 ntBASIC6.59□□□□□ -1.35
BRCA1P38398 C16orf62-204ENST00000448695 3353 ntTSL 5 BASIC6.59□□□□□ -1.35
BRCA1P38398 AL445687.2-201ENST00000458156 728 ntBASIC6.59□□□□□ -1.35
BRCA1P38398 RN7SL354P-201ENST00000469282 294 ntBASIC6.59□□□□□ -1.35
BRCA1P38398 PLCH1-AS1-201ENST00000475196 1308 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
BRCA1P38398 AC119150.1-201ENST00000507143 563 ntTSL 2 BASIC6.59□□□□□ -1.35
BRCA1P38398 PRRC1-204ENST00000512635 2726 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
BRCA1P38398 RN7SKP21-201ENST00000516503 220 ntBASIC6.59□□□□□ -1.35
BRCA1P38398 PMS2P3-207ENST00000529061 717 ntBASIC6.59□□□□□ -1.35
BRCA1P38398 OR5AM1P-201ENST00000532136 1032 ntBASIC6.59□□□□□ -1.35
BRCA1P38398 C16orf62-216ENST00000543152 3352 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
BRCA1P38398 AC011453.2-201ENST00000603737 729 ntBASIC6.59□□□□□ -1.35
BRCA1P38398 AC020765.1-201ENST00000604296 328 ntBASIC6.59□□□□□ -1.35
BRCA1P38398 AL391358.1-201ENST00000605342 190 ntBASIC6.59□□□□□ -1.35
BRCA1P38398 TMEM132B-206ENST00000613307 9659 ntAPPRIS ALT2 TSL 1 (best) BASIC6.59□□□□□ -1.35
BRCA1P38398 PKIB-211ENST00000615438 1936 ntTSL 5 BASIC6.59□□□□□ -1.35
BRCA1P38398 AC008505.1-201ENST00000637582 2025 ntTSL 5 BASIC6.59□□□□□ -1.35
BRCA1P38398 NUP214-202ENST00000411637 7538 ntAPPRIS ALT2 TSL 1 (best) BASIC6.59□□□□□ -1.35
BRCA1P38398 NCR3LG1-201ENST00000338965 6438 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
BRCA1P38398 SLMAP-208ENST00000449503 4027 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
BRCA1P38398 MAP4K4-206ENST00000413150 6958 ntAPPRIS ALT2 TSL 5 BASIC6.59□□□□□ -1.36
BRCA1P38398 GPR85-202ENST00000424100 2895 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.36
BRCA1P38398 HTR2A-202ENST00000542664 5429 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.36
BRCA1P38398 EIF3EP2-201ENST00000423042 1814 ntBASIC6.58□□□□□ -1.36
BRCA1P38398 OR2G6-203ENST00000641804 6084 ntAPPRIS P1 BASIC6.58□□□□□ -1.36
BRCA1P38398 SLC12A6-218ENST00000560611 4239 ntAPPRIS ALT1 TSL 1 (best) BASIC6.58□□□□□ -1.36
BRCA1P38398 CHD8-201ENST00000399982 8229 ntAPPRIS ALT2 TSL 1 (best) BASIC6.58□□□□□ -1.36
BRCA1P38398 ZSCAN12-201ENST00000361028 5495 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
BRCA1P38398 RNASE9-201ENST00000338904 1049 ntAPPRIS P3 TSL 1 (best) BASIC6.58□□□□□ -1.36
BRCA1P38398 SSR1P1-201ENST00000407630 814 ntBASIC6.58□□□□□ -1.36
BRCA1P38398 RPL7P11-201ENST00000437586 658 ntBASIC6.58□□□□□ -1.36
BRCA1P38398 RPL5P25-201ENST00000441148 775 ntBASIC6.58□□□□□ -1.36
BRCA1P38398 NDUFA5P8-201ENST00000449019 346 ntBASIC6.58□□□□□ -1.36
BRCA1P38398 AC009127.1-201ENST00000467090 155 ntBASIC6.58□□□□□ -1.36
BRCA1P38398 RNASE9-204ENST00000553541 1136 ntAPPRIS P3 TSL 1 (best) BASIC6.58□□□□□ -1.36
BRCA1P38398 RNASE9-206ENST00000554964 1101 ntAPPRIS P3 TSL 1 (best) BASIC6.58□□□□□ -1.36
BRCA1P38398 RNASE9-208ENST00000556208 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC6.58□□□□□ -1.36
BRCA1P38398 RNASE9-210ENST00000557209 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC6.58□□□□□ -1.36
BRCA1P38398 AC005341.1-201ENST00000571086 708 ntBASIC6.58□□□□□ -1.36
BRCA1P38398 SMIM24-204ENST00000591708 660 ntAPPRIS ALT2 TSL 2 BASIC6.58□□□□□ -1.36
BRCA1P38398 AL161616.1-201ENST00000611867 286 ntBASIC6.58□□□□□ -1.36
BRCA1P38398 ZNRD1ASP-221ENST00000637794 1074 ntBASIC6.58□□□□□ -1.36
BRCA1P38398 CACNB4-239ENST00000636947 5575 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
BRCA1P38398 ZFHX4-204ENST00000518282 12175 ntAPPRIS ALT2 TSL 5 BASIC6.58□□□□□ -1.36
BRCA1P38398 MGAM-209ENST00000620571 6483 ntTSL 5 BASIC6.58□□□□□ -1.36
BRCA1P38398 PROX1-201ENST00000261454 8170 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
BRCA1P38398 ARL14EPL-201ENST00000601302 1914 ntAPPRIS P1 TSL 5 BASIC6.58□□□□□ -1.36
BRCA1P38398 FANCM-201ENST00000267430 7111 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
BRCA1P38398 OR2T2-202ENST00000641925 3530 ntAPPRIS P1 BASIC6.58□□□□□ -1.36
BRCA1P38398 ANKRD46-201ENST00000335659 2649 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
BRCA1P38398 SYTL5-201ENST00000297875 4722 ntTSL 5 BASIC6.58□□□□□ -1.36
BRCA1P38398 ANKS1B-216ENST00000549558 2268 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
BRCA1P38398 FOXP2-203ENST00000378237 2187 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
BRCA1P38398 AC022034.1-201ENST00000512867 2156 ntBASIC6.58□□□□□ -1.36
BRCA1P38398 LAMA2-201ENST00000421865 9640 ntAPPRIS P2 TSL 5 BASIC6.58□□□□□ -1.36
BRCA1P38398 FHIT-201ENST00000341848 174 ntTSL 3 BASIC6.58□□□□□ -1.36
BRCA1P38398 RNA5SP428-201ENST00000365129 132 ntBASIC6.58□□□□□ -1.36
BRCA1P38398 RNA5SP332-201ENST00000391063 115 ntBASIC6.58□□□□□ -1.36
BRCA1P38398 RN7SKP151-201ENST00000410230 316 ntBASIC6.58□□□□□ -1.36
BRCA1P38398 RN7SKP100-201ENST00000411258 284 ntBASIC6.58□□□□□ -1.36
BRCA1P38398 AL354868.1-201ENST00000417077 482 ntBASIC6.58□□□□□ -1.36
BRCA1P38398 VN1R21P-201ENST00000426703 765 ntBASIC6.58□□□□□ -1.36
BRCA1P38398 DNAJC19P7-201ENST00000428811 344 ntBASIC6.58□□□□□ -1.36
BRCA1P38398 FABP5P2-201ENST00000439042 408 ntBASIC6.58□□□□□ -1.36
BRCA1P38398 AL355870.1-201ENST00000448272 454 ntTSL 3 BASIC6.58□□□□□ -1.36
BRCA1P38398 LINC02218-202ENST00000504998 582 ntTSL 4 BASIC6.58□□□□□ -1.36
BRCA1P38398 AC004052.1-201ENST00000514327 567 ntTSL 4 BASIC6.58□□□□□ -1.36
BRCA1P38398 AC034205.1-201ENST00000520621 638 ntBASIC6.58□□□□□ -1.36
BRCA1P38398 AL121790.1-201ENST00000554829 738 ntTSL 3 BASIC6.58□□□□□ -1.36
BRCA1P38398 UBL5-207ENST00000590068 390 ntAPPRIS P1 TSL 5 BASIC6.58□□□□□ -1.36
BRCA1P38398 ZNF43-209ENST00000598288 560 ntTSL 4 BASIC6.58□□□□□ -1.36
BRCA1P38398 AC097495.1-201ENST00000637675 546 ntAPPRIS P1 TSL 5 BASIC6.58□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 878.3 ms