Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 HIST1H3PS1-201ENST00000404612 417 ntBASIC4.32□□□□□ -1.72
HLA-DMBP28068 BCL11A-205ENST00000409351 756 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
HLA-DMBP28068 MRPL53P1-201ENST00000414323 319 ntBASIC4.32□□□□□ -1.72
HLA-DMBP28068 VN1R21P-201ENST00000426703 765 ntBASIC4.32□□□□□ -1.72
HLA-DMBP28068 TEX41-206ENST00000432608 661 ntTSL 3 BASIC4.32□□□□□ -1.72
HLA-DMBP28068 AC023481.1-201ENST00000435368 938 ntTSL 3 BASIC4.32□□□□□ -1.72
HLA-DMBP28068 TUBB4BP6-201ENST00000437576 479 ntBASIC4.32□□□□□ -1.72
HLA-DMBP28068 MEOX2-AS1-201ENST00000442176 697 ntTSL 3 BASIC4.32□□□□□ -1.72
HLA-DMBP28068 RNF219-AS1-202ENST00000444769 590 ntTSL 4 BASIC4.32□□□□□ -1.72
HLA-DMBP28068 AF130359.1-201ENST00000444868 438 ntTSL 3 BASIC4.32□□□□□ -1.72
HLA-DMBP28068 AL354793.1-201ENST00000446028 713 ntTSL 3 BASIC4.32□□□□□ -1.72
HLA-DMBP28068 AL161722.1-201ENST00000446972 1032 ntBASIC4.32□□□□□ -1.72
HLA-DMBP28068 RABGAP1L-214ENST00000478442 648 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
HLA-DMBP28068 LINC02006-201ENST00000488210 524 ntTSL 4 BASIC4.32□□□□□ -1.72
HLA-DMBP28068 RN7SL57P-201ENST00000493687 290 ntBASIC4.32□□□□□ -1.72
HLA-DMBP28068 SCGB3A2-202ENST00000504320 440 ntTSL 3 BASIC4.32□□□□□ -1.72
HLA-DMBP28068 Y_RNA.667-201ENST00000516212 107 ntBASIC4.32□□□□□ -1.72
HLA-DMBP28068 RNA5SP271-201ENST00000516700 88 ntBASIC4.32□□□□□ -1.72
HLA-DMBP28068 UQCRB-204ENST00000518406 595 ntTSL 5 BASIC4.32□□□□□ -1.72
HLA-DMBP28068 AC138832.1-201ENST00000522871 556 ntBASIC4.32□□□□□ -1.72
HLA-DMBP28068 IGKV2-4-201ENST00000523070 340 ntBASIC4.32□□□□□ -1.72
HLA-DMBP28068 AP000763.3-201ENST00000542598 334 ntTSL 5 BASIC4.32□□□□□ -1.72
HLA-DMBP28068 LINC02411-203ENST00000546180 959 ntTSL 4 BASIC4.32□□□□□ -1.72
HLA-DMBP28068 AC139697.1-201ENST00000548429 745 ntBASIC4.32□□□□□ -1.72
HLA-DMBP28068 AC068305.2-201ENST00000550567 1205 ntBASIC4.32□□□□□ -1.72
HLA-DMBP28068 AL162464.1-201ENST00000557642 554 ntTSL 5 BASIC4.32□□□□□ -1.72
HLA-DMBP28068 AC096996.1-201ENST00000563813 325 ntBASIC4.32□□□□□ -1.72
HLA-DMBP28068 AC009120.4-201ENST00000564455 513 ntTSL 5 BASIC4.32□□□□□ -1.72
HLA-DMBP28068 AC092121.1-201ENST00000569452 202 ntBASIC4.32□□□□□ -1.72
HLA-DMBP28068 AC027216.1-201ENST00000577726 685 ntBASIC4.32□□□□□ -1.72
HLA-DMBP28068 DHFRP1-201ENST00000579682 559 ntBASIC4.32□□□□□ -1.72
HLA-DMBP28068 AC005288.1-201ENST00000582842 860 ntTSL 2 BASIC4.32□□□□□ -1.72
HLA-DMBP28068 AC018809.2-201ENST00000602436 3823 ntBASIC4.32□□□□□ -1.72
HLA-DMBP28068 AC026786.2-201ENST00000606110 392 ntTSL 3 BASIC4.32□□□□□ -1.72
HLA-DMBP28068 AC026124.2-201ENST00000621847 656 ntBASIC4.32□□□□□ -1.72
HLA-DMBP28068 LINC01837-206ENST00000636649 1056 ntTSL 5 BASIC4.32□□□□□ -1.72
HLA-DMBP28068 AC099654.11-201ENST00000638857 294 ntBASIC4.32□□□□□ -1.72
HLA-DMBP28068 AC008691.1-209ENST00000642094 814 ntBASIC4.32□□□□□ -1.72
HLA-DMBP28068 PTPRR-204ENST00000440835 2818 ntAPPRIS ALT2 TSL 1 (best) BASIC4.32□□□□□ -1.72
HLA-DMBP28068 GVINP1-202ENST00000531871 7271 ntBASIC4.32□□□□□ -1.72
HLA-DMBP28068 ETV1-207ENST00000405358 4181 ntTSL 5 BASIC4.32□□□□□ -1.72
HLA-DMBP28068 SIAH1-202ENST00000380006 3352 ntAPPRIS P3 BASIC4.32□□□□□ -1.72
HLA-DMBP28068 ZNF230-201ENST00000429154 4115 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
HLA-DMBP28068 RMST-209ENST00000639542 3269 ntTSL 5 BASIC4.32□□□□□ -1.72
HLA-DMBP28068 LINC01581-202ENST00000558874 3173 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
HLA-DMBP28068 ALB-220ENST00000621628 1606 ntTSL 5 BASIC4.32□□□□□ -1.72
HLA-DMBP28068 BBOX1-202ENST00000525090 1596 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
HLA-DMBP28068 FKBP7-204ENST00000424785 2834 ntAPPRIS P3 TSL 1 (best) BASIC4.31□□□□□ -1.72
HLA-DMBP28068 ACADSB-201ENST00000358776 5859 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
HLA-DMBP28068 LIMA1-203ENST00000547825 3920 ntAPPRIS ALT2 TSL 1 (best) BASIC4.31□□□□□ -1.72
HLA-DMBP28068 SEM1-202ENST00000356686 2667 ntTSL 5 BASIC4.31□□□□□ -1.72
HLA-DMBP28068 ZNF571-202ENST00000358744 2049 ntAPPRIS P1 TSL 2 BASIC4.31□□□□□ -1.72
HLA-DMBP28068 RWDD2A-201ENST00000369724 3744 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
HLA-DMBP28068 SYNJ2BP-201ENST00000256366 7015 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
HLA-DMBP28068 NKAIN2-204ENST00000545433 3052 ntTSL 5 BASIC4.31□□□□□ -1.72
HLA-DMBP28068 GRAMD2B-202ENST00000502348 1363 ntTSL 2 BASIC4.31□□□□□ -1.72
HLA-DMBP28068 DYNC1I2-225ENST00000508530 2494 ntAPPRIS ALT1 TSL 1 (best) BASIC4.31□□□□□ -1.72
HLA-DMBP28068 TRIQK-223ENST00000537541 3510 ntAPPRIS P1 TSL 3 BASIC4.31□□□□□ -1.72
HLA-DMBP28068 PEAK1-201ENST00000312493 11512 ntAPPRIS P1 TSL 5 BASIC4.31□□□□□ -1.72
HLA-DMBP28068 REP15-201ENST00000310791 1078 ntAPPRIS P1 BASIC4.31□□□□□ -1.72
HLA-DMBP28068 AC090616.2-201ENST00000358484 431 ntTSL 3 BASIC4.31□□□□□ -1.72
HLA-DMBP28068 RPS24-201ENST00000360830 514 ntAPPRIS ALT1 TSL 1 (best) BASIC4.31□□□□□ -1.72
HLA-DMBP28068 RNA5SP273-201ENST00000362484 113 ntBASIC4.31□□□□□ -1.72
HLA-DMBP28068 SNORA70.6-201ENST00000383934 134 ntBASIC4.31□□□□□ -1.72
HLA-DMBP28068 AC005042.1-201ENST00000393397 800 ntBASIC4.31□□□□□ -1.72
HLA-DMBP28068 LYPLA1P3-201ENST00000402650 695 ntBASIC4.31□□□□□ -1.72
HLA-DMBP28068 AC016739.1-201ENST00000405359 345 ntBASIC4.31□□□□□ -1.72
HLA-DMBP28068 MIR3681HG-202ENST00000412606 578 ntTSL 5 BASIC4.31□□□□□ -1.72
HLA-DMBP28068 MIRLET7DHG-201ENST00000416309 1294 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
HLA-DMBP28068 RNGTTP1-201ENST00000420965 728 ntBASIC4.31□□□□□ -1.72
HLA-DMBP28068 AC073283.2-202ENST00000426892 591 ntTSL 4 BASIC4.31□□□□□ -1.72
HLA-DMBP28068 CDY8P-201ENST00000428380 1279 ntBASIC4.31□□□□□ -1.72
HLA-DMBP28068 LINC01889-201ENST00000430692 668 ntTSL 5 BASIC4.31□□□□□ -1.72
HLA-DMBP28068 AC126120.1-201ENST00000431082 470 ntBASIC4.31□□□□□ -1.72
HLA-DMBP28068 AC073062.1-201ENST00000434509 455 ntTSL 5 BASIC4.31□□□□□ -1.72
HLA-DMBP28068 AC012368.1-201ENST00000438115 552 ntTSL 3 BASIC4.31□□□□□ -1.72
HLA-DMBP28068 AL158850.1-201ENST00000441249 914 ntTSL 3 BASIC4.31□□□□□ -1.72
HLA-DMBP28068 MED28P3-201ENST00000444288 531 ntBASIC4.31□□□□□ -1.72
HLA-DMBP28068 AL139275.1-201ENST00000447315 824 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
HLA-DMBP28068 CDY20P-201ENST00000447528 1279 ntBASIC4.31□□□□□ -1.72
HLA-DMBP28068 OR2A1-AS1-202ENST00000467944 422 ntBASIC4.31□□□□□ -1.72
HLA-DMBP28068 AC099521.1-201ENST00000482557 334 ntBASIC4.31□□□□□ -1.72
HLA-DMBP28068 RPL32P33-201ENST00000487023 394 ntBASIC4.31□□□□□ -1.72
HLA-DMBP28068 RN7SL193P-201ENST00000491708 276 ntBASIC4.31□□□□□ -1.72
HLA-DMBP28068 LINC02218-202ENST00000504998 582 ntTSL 4 BASIC4.31□□□□□ -1.72
HLA-DMBP28068 AC027627.1-201ENST00000506895 753 ntTSL 3 BASIC4.31□□□□□ -1.72
HLA-DMBP28068 AC114781.3-201ENST00000512083 142 ntBASIC4.31□□□□□ -1.72
HLA-DMBP28068 SCARNA18.1-201ENST00000516330 83 ntBASIC4.31□□□□□ -1.72
HLA-DMBP28068 LINC00967-201ENST00000517689 792 ntTSL 5 BASIC4.31□□□□□ -1.72
HLA-DMBP28068 WASHC5-AS1-201ENST00000519140 587 ntTSL 4 BASIC4.31□□□□□ -1.72
HLA-DMBP28068 AP000873.2-204ENST00000530825 375 ntTSL 3 BASIC4.31□□□□□ -1.72
HLA-DMBP28068 AC026894.1-201ENST00000532930 850 ntTSL 3 BASIC4.31□□□□□ -1.72
HLA-DMBP28068 AP002370.2-202ENST00000533669 908 ntTSL 5 BASIC4.31□□□□□ -1.72
HLA-DMBP28068 RERGL-202ENST00000536890 367 ntTSL 3 BASIC4.31□□□□□ -1.72
HLA-DMBP28068 SLC48A1-205ENST00000547002 751 ntTSL 3 BASIC4.31□□□□□ -1.72
HLA-DMBP28068 AC048382.2-201ENST00000560239 492 ntTSL 2 BASIC4.31□□□□□ -1.72
HLA-DMBP28068 AC136944.1-201ENST00000567464 560 ntTSL 5 BASIC4.31□□□□□ -1.72
HLA-DMBP28068 AC092132.1-201ENST00000570859 352 ntTSL 3 BASIC4.31□□□□□ -1.72
HLA-DMBP28068 AC090286.3-201ENST00000573133 187 ntBASIC4.31□□□□□ -1.72
HLA-DMBP28068 ZNF528-211ENST00000598192 625 ntTSL 3 BASIC4.31□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 102.6 ms