Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 LINC02327-205ENST00000550990 472 ntTSL 3 BASIC5.94□□□□□ -1.46
APOEP02649 SLC7A7-210ENST00000554517 1158 ntTSL 5 BASIC5.94□□□□□ -1.46
APOEP02649 PWRN1-204ENST00000565241 480 ntTSL 2 BASIC5.94□□□□□ -1.46
APOEP02649 AC010547.6-201ENST00000571789 193 ntBASIC5.94□□□□□ -1.46
APOEP02649 AC007431.2-201ENST00000577189 563 ntTSL 2 BASIC5.94□□□□□ -1.46
APOEP02649 AP000897.2-201ENST00000579509 1057 ntTSL 3 BASIC5.94□□□□□ -1.46
APOEP02649 AC005856.1-201ENST00000585921 286 ntTSL 3 BASIC5.94□□□□□ -1.46
APOEP02649 AC010463.2-201ENST00000597592 661 ntTSL 5 BASIC5.94□□□□□ -1.46
APOEP02649 Z98949.1-207ENST00000609157 814 ntTSL 5 BASIC5.94□□□□□ -1.46
APOEP02649 AC241377.1-201ENST00000619797 406 ntBASIC5.94□□□□□ -1.46
APOEP02649 Metazoa_SRP.130-201ENST00000622625 267 ntBASIC5.94□□□□□ -1.46
APOEP02649 C1orf195-202ENST00000625027 441 ntTSL 5 BASIC5.94□□□□□ -1.46
APOEP02649 SNAP23-222ENST00000626061 237 ntTSL 5 BASIC5.94□□□□□ -1.46
APOEP02649 SNAP23-223ENST00000627440 210 ntTSL 5 BASIC5.94□□□□□ -1.46
APOEP02649 AC103703.1-201ENST00000634783 663 ntBASIC5.94□□□□□ -1.46
APOEP02649 EPB41L2-226ENST00000530757 4360 ntTSL 2 BASIC5.94□□□□□ -1.46
APOEP02649 TTC39C-201ENST00000304621 2304 ntAPPRIS P3 TSL 1 (best) BASIC5.94□□□□□ -1.46
APOEP02649 MYBPC1-207ENST00000545503 3569 ntAPPRIS ALT2 TSL 1 (best) BASIC5.94□□□□□ -1.46
APOEP02649 PTPRD-202ENST00000356435 9472 ntAPPRIS P1 TSL 5 BASIC5.94□□□□□ -1.46
APOEP02649 TESPA1-203ENST00000524622 4188 ntAPPRIS ALT2 TSL 1 (best) BASIC5.94□□□□□ -1.46
APOEP02649 ATF2-212ENST00000426833 4132 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
APOEP02649 SLC12A1-201ENST00000330289 1764 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
APOEP02649 AC114774.1-201ENST00000507410 1770 ntBASIC5.93□□□□□ -1.46
APOEP02649 RFFL-202ENST00000394597 4227 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
APOEP02649 SAMD9L-204ENST00000437805 5757 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
APOEP02649 PNLIPRP3-201ENST00000369230 2354 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
APOEP02649 POLR2B-213ENST00000639658 3300 ntTSL 5 BASIC5.93□□□□□ -1.46
APOEP02649 CCDC62-205ENST00000537566 3537 ntAPPRIS ALT2 TSL 2 BASIC5.93□□□□□ -1.46
APOEP02649 TENM1-202ENST00000422452 12891 ntAPPRIS ALT1 TSL 1 (best) BASIC5.93□□□□□ -1.46
APOEP02649 TBCK-205ENST00000432496 3362 ntAPPRIS P1 TSL 2 BASIC5.93□□□□□ -1.46
APOEP02649 GABRG3-201ENST00000333743 1235 ntTSL 5 BASIC5.93□□□□□ -1.46
APOEP02649 KRTAP23-1-201ENST00000334160 211 ntAPPRIS P1 BASIC5.93□□□□□ -1.46
APOEP02649 PPCS-201ENST00000372556 984 ntTSL 2 BASIC5.93□□□□□ -1.46
APOEP02649 SSR1P1-201ENST00000407630 814 ntBASIC5.93□□□□□ -1.46
APOEP02649 CDY17P-201ENST00000414121 1282 ntBASIC5.93□□□□□ -1.46
APOEP02649 AL360227.1-201ENST00000425364 433 ntTSL 3 BASIC5.93□□□□□ -1.46
APOEP02649 VTI1BP4-201ENST00000427516 527 ntBASIC5.93□□□□□ -1.46
APOEP02649 AC003991.1-210ENST00000434733 1048 ntTSL 3 BASIC5.93□□□□□ -1.46
APOEP02649 GAPDHP48-201ENST00000436626 961 ntBASIC5.93□□□□□ -1.46
APOEP02649 AC092941.2-201ENST00000444379 1008 ntTSL 3 BASIC5.93□□□□□ -1.46
APOEP02649 ITGA9-AS1-207ENST00000445429 532 ntTSL 5 BASIC5.93□□□□□ -1.46
APOEP02649 AC073072.2-201ENST00000447425 348 ntBASIC5.93□□□□□ -1.46
APOEP02649 AL358876.1-201ENST00000453364 1075 ntBASIC5.93□□□□□ -1.46
APOEP02649 RABGAP1L-214ENST00000478442 648 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
APOEP02649 C21orf62-202ENST00000479548 964 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
APOEP02649 AC087672.1-201ENST00000479876 766 ntBASIC5.93□□□□□ -1.46
APOEP02649 RPS3AP15-201ENST00000483874 781 ntBASIC5.93□□□□□ -1.46
APOEP02649 DUTP1-201ENST00000493631 470 ntBASIC5.93□□□□□ -1.46
APOEP02649 AC104109.1-201ENST00000498563 436 ntBASIC5.93□□□□□ -1.46
APOEP02649 AC110275.1-201ENST00000534420 623 ntAPPRIS P1 TSL 4 BASIC5.93□□□□□ -1.46
APOEP02649 AAGAB-203ENST00000542650 1015 ntTSL 2 BASIC5.93□□□□□ -1.46
APOEP02649 DCN-210ENST00000547568 823 ntTSL 3 BASIC5.93□□□□□ -1.46
APOEP02649 MYL6-213ENST00000549017 502 ntTSL 3 BASIC5.93□□□□□ -1.46
APOEP02649 AC068722.1-202ENST00000559600 655 ntTSL 3 BASIC5.93□□□□□ -1.46
APOEP02649 AC090617.5-201ENST00000571815 528 ntTSL 3 BASIC5.93□□□□□ -1.46
APOEP02649 AC011990.1-201ENST00000592809 734 ntTSL 3 BASIC5.93□□□□□ -1.46
APOEP02649 AC011287.1-204ENST00000640300 1213 ntTSL 5 BASIC5.93□□□□□ -1.46
APOEP02649 AC027279.4-201ENST00000624371 2072 ntBASIC5.93□□□□□ -1.46
APOEP02649 DROSHA-212ENST00000511367 5305 ntAPPRIS P4 TSL 1 (best) BASIC5.93□□□□□ -1.46
APOEP02649 AL138820.1-201ENST00000617901 5305 ntBASIC5.93□□□□□ -1.46
APOEP02649 KBTBD3-201ENST00000526793 3751 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
APOEP02649 KARSP1-201ENST00000451871 1752 ntBASIC5.93□□□□□ -1.46
APOEP02649 TOR1AIP1-202ENST00000435319 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC5.92□□□□□ -1.46
APOEP02649 ZNF559-ZNF177-201ENST00000434737 2340 ntAPPRIS ALT2 TSL 2 BASIC5.92□□□□□ -1.46
APOEP02649 MMRN1-202ENST00000394980 5217 ntAPPRIS P1 TSL 5 BASIC5.92□□□□□ -1.46
APOEP02649 LINC00598-206ENST00000615947 3541 ntTSL 4 BASIC5.92□□□□□ -1.46
APOEP02649 ACADSB-201ENST00000358776 5859 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
APOEP02649 PNISR-202ENST00000438806 3142 ntAPPRIS P1 TSL 2 BASIC5.92□□□□□ -1.46
APOEP02649 COL14A1-209ENST00000537875 3119 ntTSL 5 BASIC5.92□□□□□ -1.46
APOEP02649 EMC2-201ENST00000220853 1243 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
APOEP02649 RNA5SP46-201ENST00000362370 120 ntBASIC5.92□□□□□ -1.46
APOEP02649 RNA5SP453-201ENST00000362503 119 ntBASIC5.92□□□□□ -1.46
APOEP02649 RNA5SP91-201ENST00000390902 119 ntBASIC5.92□□□□□ -1.46
APOEP02649 CEACAM7-202ENST00000401731 1236 ntAPPRIS P1 TSL 2 BASIC5.92□□□□□ -1.46
APOEP02649 AC017048.1-201ENST00000412153 495 ntTSL 2 BASIC5.92□□□□□ -1.46
APOEP02649 EEF1A1P29-201ENST00000416082 1096 ntBASIC5.92□□□□□ -1.46
APOEP02649 AC092634.4-201ENST00000419937 423 ntTSL 3 BASIC5.92□□□□□ -1.46
APOEP02649 AC242426.1-201ENST00000435270 960 ntBASIC5.92□□□□□ -1.46
APOEP02649 RPL12P18-201ENST00000437175 325 ntBASIC5.92□□□□□ -1.46
APOEP02649 SUMO2P3-201ENST00000438311 288 ntBASIC5.92□□□□□ -1.46
APOEP02649 PHC3-208ENST00000481639 1075 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
APOEP02649 AC073610.1-201ENST00000489971 396 ntBASIC5.92□□□□□ -1.46
APOEP02649 AC027343.2-201ENST00000513219 343 ntTSL 3 BASIC5.92□□□□□ -1.46
APOEP02649 SNORA43.3-201ENST00000517240 103 ntBASIC5.92□□□□□ -1.46
APOEP02649 OR8Q1P-201ENST00000526467 655 ntBASIC5.92□□□□□ -1.46
APOEP02649 GTF2IP11-201ENST00000526931 420 ntBASIC5.92□□□□□ -1.46
APOEP02649 RERGL-203ENST00000538724 973 ntAPPRIS P1 TSL 2 BASIC5.92□□□□□ -1.46
APOEP02649 DPPA2P4-201ENST00000563717 878 ntBASIC5.92□□□□□ -1.46
APOEP02649 AC012588.1-201ENST00000583852 358 ntTSL 3 BASIC5.92□□□□□ -1.46
APOEP02649 AC063977.5-201ENST00000601044 974 ntBASIC5.92□□□□□ -1.46
APOEP02649 PROX1-AS1-219ENST00000610094 791 ntTSL 5 BASIC5.92□□□□□ -1.46
APOEP02649 DARS-AS1-225ENST00000615163 824 ntTSL 5 BASIC5.92□□□□□ -1.46
APOEP02649 AC126175.1-201ENST00000617041 758 ntBASIC5.92□□□□□ -1.46
APOEP02649 RNA5SP439-201ENST00000617595 124 ntBASIC5.92□□□□□ -1.46
APOEP02649 REV3L-214ENST00000619481 969 ntTSL 5 BASIC5.92□□□□□ -1.46
APOEP02649 AL512356.3-201ENST00000623005 461 ntBASIC5.92□□□□□ -1.46
APOEP02649 DECR1-215ENST00000522161 1766 ntAPPRIS ALT2 TSL 2 BASIC5.92□□□□□ -1.46
APOEP02649 SLFN13-201ENST00000285013 8469 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
APOEP02649 IFRD1-217ENST00000621379 3232 ntTSL 2 BASIC5.92□□□□□ -1.46
APOEP02649 AC011933.2-201ENST00000578539 2790 ntBASIC5.92□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 89.6 ms