Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 HAT1-201ENST00000264108 1626 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC3Q9BQI4 ZNF81-202ENST00000338637 7859 ntAPPRIS P1 TSL 3 BASIC5.64□□□□□ -1.51
CCDC3Q9BQI4 CASC11-201ENST00000502463 3301 ntTSL 2 BASIC5.64□□□□□ -1.51
CCDC3Q9BQI4 ERI2-206ENST00000563117 2903 ntTSL 2 BASIC5.64□□□□□ -1.51
CCDC3Q9BQI4 OR9K1P-201ENST00000326513 941 ntBASIC5.64□□□□□ -1.51
CCDC3Q9BQI4 C1orf194-203ENST00000369948 663 ntAPPRIS P1 TSL 2 BASIC5.64□□□□□ -1.51
CCDC3Q9BQI4 ZRSR2-202ENST00000380308 744 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC3Q9BQI4 LINC01133-202ENST00000443364 1266 ntTSL 5 BASIC5.64□□□□□ -1.51
CCDC3Q9BQI4 AC005297.1-201ENST00000444765 862 ntBASIC5.64□□□□□ -1.51
CCDC3Q9BQI4 CATSPER2P1-205ENST00000446479 419 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC3Q9BQI4 RNU7-157P-201ENST00000459600 66 ntBASIC5.64□□□□□ -1.51
CCDC3Q9BQI4 AL133445.1-201ENST00000467051 452 ntBASIC5.64□□□□□ -1.51
CCDC3Q9BQI4 SPRR2F-201ENST00000468739 681 ntAPPRIS P1 TSL 3 BASIC5.64□□□□□ -1.51
CCDC3Q9BQI4 AL035690.1-201ENST00000490892 383 ntBASIC5.64□□□□□ -1.51
CCDC3Q9BQI4 AC068672.3-203ENST00000505166 311 ntTSL 3 BASIC5.64□□□□□ -1.51
CCDC3Q9BQI4 BX510359.5-201ENST00000515651 304 ntBASIC5.64□□□□□ -1.51
CCDC3Q9BQI4 LINC02327-205ENST00000550990 472 ntTSL 3 BASIC5.64□□□□□ -1.51
CCDC3Q9BQI4 AC012464.2-201ENST00000551257 779 ntTSL 5 BASIC5.64□□□□□ -1.51
CCDC3Q9BQI4 SMARCE1P3-201ENST00000553649 1231 ntBASIC5.64□□□□□ -1.51
CCDC3Q9BQI4 AC068722.1-202ENST00000559600 655 ntTSL 3 BASIC5.64□□□□□ -1.51
CCDC3Q9BQI4 AC113208.4-201ENST00000563568 206 ntTSL 3 BASIC5.64□□□□□ -1.51
CCDC3Q9BQI4 DPPA2P4-201ENST00000563717 878 ntBASIC5.64□□□□□ -1.51
CCDC3Q9BQI4 AC005726.5-201ENST00000585189 298 ntTSL 5 BASIC5.64□□□□□ -1.51
CCDC3Q9BQI4 AC087468.1-201ENST00000604365 630 ntBASIC5.64□□□□□ -1.51
CCDC3Q9BQI4 AC015574.1-205ENST00000611285 524 ntTSL 5 BASIC5.64□□□□□ -1.51
CCDC3Q9BQI4 MIR6719-201ENST00000622428 87 ntBASIC5.64□□□□□ -1.51
CCDC3Q9BQI4 NSD1-202ENST00000354179 12195 ntTSL 5 BASIC5.64□□□□□ -1.51
CCDC3Q9BQI4 PAK3-202ENST00000360648 2241 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC3Q9BQI4 RNMT-202ENST00000383314 6250 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC3Q9BQI4 CAPRIN2-202ENST00000395805 4156 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC3Q9BQI4 BICRAL-201ENST00000314073 6530 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC3Q9BQI4 ARMCX5-201ENST00000246174 2899 ntAPPRIS P1 TSL 2 BASIC5.64□□□□□ -1.51
CCDC3Q9BQI4 CEP290-202ENST00000397838 2421 ntTSL 5 BASIC5.64□□□□□ -1.51
CCDC3Q9BQI4 AC068769.1-201ENST00000474767 2426 ntBASIC5.64□□□□□ -1.51
CCDC3Q9BQI4 TYW3-201ENST00000370867 3430 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC3Q9BQI4 SERPINA9-204ENST00000424550 1462 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC3Q9BQI4 OR12D2-207ENST00000642051 1496 ntAPPRIS P1 BASIC5.64□□□□□ -1.51
CCDC3Q9BQI4 RYR3-202ENST00000415757 15557 ntAPPRIS ALT2 TSL 2 BASIC5.64□□□□□ -1.51
CCDC3Q9BQI4 MECOM-202ENST00000433243 3508 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
CCDC3Q9BQI4 ALS2CR12-203ENST00000405148 2013 ntAPPRIS P3 TSL 5 BASIC5.64□□□□□ -1.51
CCDC3Q9BQI4 MCM10-201ENST00000378694 4587 ntTSL 5 BASIC5.64□□□□□ -1.51
CCDC3Q9BQI4 ODF2-205ENST00000393527 3653 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC3Q9BQI4 AC015813.1-203ENST00000585065 4722 ntTSL 2 BASIC5.63□□□□□ -1.51
CCDC3Q9BQI4 FLRT3-202ENST00000378053 4776 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC3Q9BQI4 SMARCE1-208ENST00000474246 2124 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC3Q9BQI4 PPP1R1C-201ENST00000280295 1636 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC3Q9BQI4 AC087258.1-203ENST00000545400 1629 ntTSL 2 BASIC5.63□□□□□ -1.51
CCDC3Q9BQI4 CHM-201ENST00000357749 5442 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC3Q9BQI4 HSPD1P8-201ENST00000400121 1658 ntBASIC5.63□□□□□ -1.51
CCDC3Q9BQI4 PTPRD-214ENST00000540109 6210 ntAPPRIS P1 TSL 5 BASIC5.63□□□□□ -1.51
CCDC3Q9BQI4 CEACAMP10-201ENST00000489959 1721 ntTSL 2 BASIC5.63□□□□□ -1.51
CCDC3Q9BQI4 TMEM67-205ENST00000453321 4651 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC3Q9BQI4 FSCB-201ENST00000340446 2938 ntAPPRIS P1 BASIC5.63□□□□□ -1.51
CCDC3Q9BQI4 VNN3-207ENST00000425515 1761 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC3Q9BQI4 KANTR-203ENST00000604062 4251 ntAPPRIS P1 TSL 5 BASIC5.63□□□□□ -1.51
CCDC3Q9BQI4 PLEKHA1-203ENST00000368990 14010 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC3Q9BQI4 AL391422.1-201ENST00000402155 436 ntBASIC5.63□□□□□ -1.51
CCDC3Q9BQI4 AL121835.1-201ENST00000404250 354 ntBASIC5.63□□□□□ -1.51
CCDC3Q9BQI4 RMRPP5-201ENST00000411156 267 ntBASIC5.63□□□□□ -1.51
CCDC3Q9BQI4 LINC00463-201ENST00000413501 1147 ntTSL 3 BASIC5.63□□□□□ -1.51
CCDC3Q9BQI4 LINC00317-201ENST00000419069 612 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC3Q9BQI4 GNRH1-202ENST00000421054 470 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC3Q9BQI4 AP001476.3-201ENST00000429512 415 ntTSL 3 BASIC5.63□□□□□ -1.51
CCDC3Q9BQI4 AC007556.1-201ENST00000432133 307 ntTSL 2 BASIC5.63□□□□□ -1.51
CCDC3Q9BQI4 FMO7P-201ENST00000436045 768 ntBASIC5.63□□□□□ -1.51
CCDC3Q9BQI4 HRAT17-202ENST00000451962 687 ntTSL 5 BASIC5.63□□□□□ -1.51
CCDC3Q9BQI4 AL157777.1-201ENST00000468100 304 ntBASIC5.63□□□□□ -1.51
CCDC3Q9BQI4 SERF1B-203ENST00000503931 569 ntTSL 4 BASIC5.63□□□□□ -1.51
CCDC3Q9BQI4 SERF1A-204ENST00000504458 569 ntTSL 4 BASIC5.63□□□□□ -1.51
CCDC3Q9BQI4 LINC01365-202ENST00000512219 637 ntTSL 5 BASIC5.63□□□□□ -1.51
CCDC3Q9BQI4 LINC02382-201ENST00000515840 614 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC3Q9BQI4 AC091819.2-201ENST00000522292 490 ntTSL 3 BASIC5.63□□□□□ -1.51
CCDC3Q9BQI4 HNRNPRP2-201ENST00000528421 743 ntBASIC5.63□□□□□ -1.51
CCDC3Q9BQI4 LDHC-203ENST00000535809 757 ntTSL 5 BASIC5.63□□□□□ -1.51
CCDC3Q9BQI4 AC016257.1-201ENST00000550088 641 ntTSL 2 BASIC5.63□□□□□ -1.51
CCDC3Q9BQI4 DUXA-201ENST00000554048 1006 ntAPPRIS P1 TSL 3 BASIC5.63□□□□□ -1.51
CCDC3Q9BQI4 AC020704.1-201ENST00000559394 454 ntTSL 3 BASIC5.63□□□□□ -1.51
CCDC3Q9BQI4 PINLYP-205ENST00000569031 557 ntTSL 2 BASIC5.63□□□□□ -1.51
CCDC3Q9BQI4 AL136311.1-213ENST00000586466 520 ntTSL 5 BASIC5.63□□□□□ -1.51
CCDC3Q9BQI4 AC011451.1-201ENST00000591336 405 ntTSL 3 BASIC5.63□□□□□ -1.51
CCDC3Q9BQI4 DARS-AS1-217ENST00000599279 544 ntTSL 5 BASIC5.63□□□□□ -1.51
CCDC3Q9BQI4 BNIP3P7-201ENST00000605641 516 ntBASIC5.63□□□□□ -1.51
CCDC3Q9BQI4 AC138473.1-201ENST00000605717 526 ntBASIC5.63□□□□□ -1.51
CCDC3Q9BQI4 AL008635.1-201ENST00000609073 385 ntTSL 3 BASIC5.63□□□□□ -1.51
CCDC3Q9BQI4 AC245041.2-202ENST00000613389 493 ntTSL 5 BASIC5.63□□□□□ -1.51
CCDC3Q9BQI4 AL391425.1-202ENST00000617518 774 ntTSL 5 BASIC5.63□□□□□ -1.51
CCDC3Q9BQI4 NADK2-211ENST00000617628 744 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC3Q9BQI4 AL390318.1-201ENST00000624564 687 ntBASIC5.63□□□□□ -1.51
CCDC3Q9BQI4 AC007683.2-201ENST00000624681 714 ntBASIC5.63□□□□□ -1.51
CCDC3Q9BQI4 FP236241.1-206ENST00000625005 987 ntTSL 5 BASIC5.63□□□□□ -1.51
CCDC3Q9BQI4 AL359094.1-202ENST00000629917 1113 ntTSL 5 BASIC5.63□□□□□ -1.51
CCDC3Q9BQI4 AC007402.1-201ENST00000440698 3939 ntTSL 2 BASIC5.63□□□□□ -1.51
CCDC3Q9BQI4 OR2T29-202ENST00000641069 2637 ntAPPRIS P1 BASIC5.63□□□□□ -1.51
CCDC3Q9BQI4 AL080276.2-201ENST00000637995 2090 ntTSL 3 BASIC5.63□□□□□ -1.51
CCDC3Q9BQI4 SGMS2-203ENST00000394686 2127 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC3Q9BQI4 THAP12P8-201ENST00000447914 2115 ntBASIC5.63□□□□□ -1.51
CCDC3Q9BQI4 GBA3-206ENST00000610628 2154 ntAPPRIS ALT2 TSL 5 BASIC5.63□□□□□ -1.51
CCDC3Q9BQI4 YTHDC1-207ENST00000579690 2983 ntAPPRIS ALT2 TSL 5 BASIC5.63□□□□□ -1.51
CCDC3Q9BQI4 ARHGAP29-201ENST00000260526 6087 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
CCDC3Q9BQI4 CLIP4-202ENST00000401605 2322 ntTSL 2 BASIC5.63□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 109.8 ms