Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AC005703.1-201ENST00000431343 1773 ntTSL 2 BASIC5.66□□□□□ -1.5
LHX3Q9UBR4 AL353751.1-201ENST00000354541 495 ntTSL 3 BASIC5.66□□□□□ -1.5
LHX3Q9UBR4 MIR323A-201ENST00000362199 86 ntBASIC5.66□□□□□ -1.5
LHX3Q9UBR4 TRDC-201ENST00000390477 720 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
LHX3Q9UBR4 ZSCAN12P1-201ENST00000406489 419 ntBASIC5.66□□□□□ -1.5
LHX3Q9UBR4 GABARAPL3-201ENST00000412799 354 ntBASIC5.66□□□□□ -1.5
LHX3Q9UBR4 RPS21P8-201ENST00000413365 247 ntBASIC5.66□□□□□ -1.5
LHX3Q9UBR4 AL513325.1-201ENST00000417716 1034 ntBASIC5.66□□□□□ -1.5
LHX3Q9UBR4 AL355994.1-201ENST00000424379 260 ntBASIC5.66□□□□□ -1.5
LHX3Q9UBR4 AL353693.1-201ENST00000429567 442 ntTSL 3 BASIC5.66□□□□□ -1.5
LHX3Q9UBR4 NFYAP1-201ENST00000431953 972 ntBASIC5.66□□□□□ -1.5
LHX3Q9UBR4 AC012075.1-201ENST00000436549 580 ntBASIC5.66□□□□□ -1.5
LHX3Q9UBR4 USP12-AS1-201ENST00000440657 268 ntTSL 5 BASIC5.66□□□□□ -1.5
LHX3Q9UBR4 MTCO3P17-201ENST00000443775 513 ntBASIC5.66□□□□□ -1.5
LHX3Q9UBR4 EPDR1-204ENST00000476620 555 ntTSL 4 BASIC5.66□□□□□ -1.5
LHX3Q9UBR4 CSNK1A1P3-201ENST00000504105 330 ntBASIC5.66□□□□□ -1.5
LHX3Q9UBR4 SSX6-203ENST00000509958 336 ntTSL 3 BASIC5.66□□□□□ -1.5
LHX3Q9UBR4 AC106872.4-201ENST00000510050 523 ntBASIC5.66□□□□□ -1.5
LHX3Q9UBR4 RNU6-1334P-201ENST00000516032 105 ntBASIC5.66□□□□□ -1.5
LHX3Q9UBR4 PMS2P3-207ENST00000529061 717 ntBASIC5.66□□□□□ -1.5
LHX3Q9UBR4 RPLP0-225ENST00000552292 720 ntTSL 2 BASIC5.66□□□□□ -1.5
LHX3Q9UBR4 AC005692.2-201ENST00000566521 596 ntTSL 3 BASIC5.66□□□□□ -1.5
LHX3Q9UBR4 AC103808.4-201ENST00000577258 391 ntTSL 3 BASIC5.66□□□□□ -1.5
LHX3Q9UBR4 OOSP1P2-201ENST00000579644 351 ntBASIC5.66□□□□□ -1.5
LHX3Q9UBR4 LINC01835-202ENST00000589345 450 ntTSL 3 BASIC5.66□□□□□ -1.5
LHX3Q9UBR4 TULP3P1-203ENST00000606237 586 ntTSL 4 BASIC5.66□□□□□ -1.5
LHX3Q9UBR4 RSU1P2-204ENST00000619977 1240 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
LHX3Q9UBR4 AL691477.1-201ENST00000624398 162 ntBASIC5.66□□□□□ -1.5
LHX3Q9UBR4 AC063952.1-203ENST00000634410 658 ntBASIC5.66□□□□□ -1.5
LHX3Q9UBR4 MIR4302-201ENST00000638058 60 ntBASIC5.66□□□□□ -1.5
LHX3Q9UBR4 AC106799.3-201ENST00000562127 3300 ntTSL 2 BASIC5.66□□□□□ -1.5
LHX3Q9UBR4 AC109811.1-201ENST00000512833 2807 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
LHX3Q9UBR4 AC140479.2-201ENST00000421567 3130 ntBASIC5.66□□□□□ -1.5
LHX3Q9UBR4 PRLR-203ENST00000348262 1339 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
LHX3Q9UBR4 MEPE-202ENST00000395102 2123 ntAPPRIS ALT2 TSL 5 BASIC5.66□□□□□ -1.5
LHX3Q9UBR4 RCAN2-201ENST00000306764 3240 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
LHX3Q9UBR4 AL513550.1-201ENST00000418945 1638 ntTSL 2 BASIC5.66□□□□□ -1.5
LHX3Q9UBR4 CD86-204ENST00000469710 1604 ntTSL 2 BASIC5.66□□□□□ -1.5
LHX3Q9UBR4 EPS8-207ENST00000540613 2204 ntTSL 2 BASIC5.66□□□□□ -1.5
LHX3Q9UBR4 CASP10-202ENST00000286186 5928 ntAPPRIS P4 TSL 1 (best) BASIC5.66□□□□□ -1.5
LHX3Q9UBR4 AC113146.2-201ENST00000560743 1961 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
LHX3Q9UBR4 SYT14P1-202ENST00000600441 1448 ntBASIC5.65□□□□□ -1.5
LHX3Q9UBR4 EIF4E-203ENST00000450253 11523 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
LHX3Q9UBR4 ZMAT1-201ENST00000372782 3185 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
LHX3Q9UBR4 RPE65-201ENST00000262340 2610 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
LHX3Q9UBR4 CD84-208ENST00000534968 7885 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
LHX3Q9UBR4 ZNF420-202ENST00000337995 3535 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
LHX3Q9UBR4 ERP27-201ENST00000266397 2096 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
LHX3Q9UBR4 UGT2B24P-201ENST00000514441 1597 ntBASIC5.65□□□□□ -1.5
LHX3Q9UBR4 RNA5SP234-201ENST00000363916 119 ntBASIC5.65□□□□□ -1.5
LHX3Q9UBR4 RN7SKP124-201ENST00000364730 341 ntBASIC5.65□□□□□ -1.5
LHX3Q9UBR4 U3.25-201ENST00000391209 220 ntBASIC5.65□□□□□ -1.5
LHX3Q9UBR4 RPL34-203ENST00000394668 853 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
LHX3Q9UBR4 AC087380.1-202ENST00000415970 1163 ntTSL 2 BASIC5.65□□□□□ -1.5
LHX3Q9UBR4 AC013268.2-201ENST00000420753 337 ntBASIC5.65□□□□□ -1.5
LHX3Q9UBR4 LINC01359-203ENST00000444349 381 ntTSL 5 BASIC5.65□□□□□ -1.5
LHX3Q9UBR4 RN7SL583P-201ENST00000475692 287 ntBASIC5.65□□□□□ -1.5
LHX3Q9UBR4 ATP5LP5-201ENST00000483050 299 ntBASIC5.65□□□□□ -1.5
LHX3Q9UBR4 THAP6-212ENST00000508105 1103 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
LHX3Q9UBR4 GAPDHP62-201ENST00000515313 990 ntBASIC5.65□□□□□ -1.5
LHX3Q9UBR4 AC140125.1-201ENST00000515739 684 ntTSL 5 BASIC5.65□□□□□ -1.5
LHX3Q9UBR4 AC090103.1-201ENST00000520386 485 ntTSL 2 BASIC5.65□□□□□ -1.5
LHX3Q9UBR4 AC025370.1-201ENST00000523775 583 ntTSL 5 BASIC5.65□□□□□ -1.5
LHX3Q9UBR4 ULK4P1-201ENST00000564495 875 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
LHX3Q9UBR4 ULK4P2-204ENST00000569682 798 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
LHX3Q9UBR4 AP001357.1-201ENST00000586304 1053 ntBASIC5.65□□□□□ -1.5
LHX3Q9UBR4 AL157938.2-209ENST00000589128 792 ntTSL 2 BASIC5.65□□□□□ -1.5
LHX3Q9UBR4 AC012616.1-201ENST00000600294 197 ntBASIC5.65□□□□□ -1.5
LHX3Q9UBR4 AC024563.1-201ENST00000601860 618 ntTSL 2 BASIC5.65□□□□□ -1.5
LHX3Q9UBR4 AL589674.2-201ENST00000604304 337 ntBASIC5.65□□□□□ -1.5
LHX3Q9UBR4 AL353729.2-201ENST00000605859 1249 ntBASIC5.65□□□□□ -1.5
LHX3Q9UBR4 AC073218.2-202ENST00000605962 617 ntTSL 5 BASIC5.65□□□□□ -1.5
LHX3Q9UBR4 PACRG-210ENST00000611387 279 ntTSL 5 BASIC5.65□□□□□ -1.5
LHX3Q9UBR4 AL118522.2-201ENST00000616045 615 ntBASIC5.65□□□□□ -1.5
LHX3Q9UBR4 MIR6729-201ENST00000618194 65 ntBASIC5.65□□□□□ -1.5
LHX3Q9UBR4 LINC00284-211ENST00000620454 534 ntTSL 4 BASIC5.65□□□□□ -1.5
LHX3Q9UBR4 HYAL4-202ENST00000476325 1616 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
LHX3Q9UBR4 ZC3H14-201ENST00000251038 18281 ntAPPRIS P3 TSL 1 (best) BASIC5.65□□□□□ -1.51
LHX3Q9UBR4 PCDH15-202ENST00000361849 7017 ntTSL 5 BASIC5.65□□□□□ -1.51
LHX3Q9UBR4 PCDH15-205ENST00000373957 7032 ntTSL 5 BASIC5.65□□□□□ -1.51
LHX3Q9UBR4 KDM4C-214ENST00000536108 3406 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
LHX3Q9UBR4 ZNF658B-201ENST00000602828 3408 ntBASIC5.65□□□□□ -1.51
LHX3Q9UBR4 FOXP2-217ENST00000462331 1388 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
LHX3Q9UBR4 MRC1-201ENST00000569591 5198 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
LHX3Q9UBR4 SCN1A-203ENST00000409050 5946 ntTSL 5 BASIC5.65□□□□□ -1.51
LHX3Q9UBR4 DNAH3-201ENST00000261383 12394 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
LHX3Q9UBR4 DOCK4-AS1-201ENST00000452714 2494 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
LHX3Q9UBR4 ZNF850-202ENST00000591344 7714 ntAPPRIS P3 TSL 1 (best) BASIC5.64□□□□□ -1.51
LHX3Q9UBR4 ACSL5-202ENST00000354655 3351 ntAPPRIS P1 TSL 2 BASIC5.64□□□□□ -1.51
LHX3Q9UBR4 ART3-202ENST00000349321 1528 ntAPPRIS P3 TSL 1 (best) BASIC5.64□□□□□ -1.51
LHX3Q9UBR4 SYTL2-208ENST00000524452 2733 ntAPPRIS P3 TSL 2 BASIC5.64□□□□□ -1.51
LHX3Q9UBR4 LINC01422-201ENST00000434868 6043 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
LHX3Q9UBR4 NSD1-201ENST00000347982 7688 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
LHX3Q9UBR4 FIRRE-202ENST00000637577 1635 ntTSL 5 BASIC5.64□□□□□ -1.51
LHX3Q9UBR4 KCNJ1-204ENST00000392665 4074 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
LHX3Q9UBR4 ADGRF1-203ENST00000371253 5468 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
LHX3Q9UBR4 FAS-203ENST00000355279 983 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
LHX3Q9UBR4 RN7SKP28-201ENST00000364770 305 ntBASIC5.64□□□□□ -1.51
LHX3Q9UBR4 CDC123-202ENST00000378900 933 ntTSL 5 BASIC5.64□□□□□ -1.51
LHX3Q9UBR4 ZRSR2-202ENST00000380308 744 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 92.7 ms