Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 DNHD1-212ENST00000527990 14298 ntAPPRIS P1 TSL 5 BASIC7.31□□□□□ -1.24
SMC1BQ8NDV3 ATP10D-201ENST00000273859 6655 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
SMC1BQ8NDV3 CABYR-216ENST00000621648 2226 ntAPPRIS P4 TSL 1 (best) BASIC7.31□□□□□ -1.24
SMC1BQ8NDV3 VWA5A-203ENST00000392748 3419 ntAPPRIS P4 TSL 1 (best) BASIC7.31□□□□□ -1.24
SMC1BQ8NDV3 CXCL8-201ENST00000307407 1705 ntAPPRIS P2 TSL 1 (best) BASIC7.31□□□□□ -1.24
SMC1BQ8NDV3 RNA5SP333-201ENST00000363466 118 ntBASIC7.31□□□□□ -1.24
SMC1BQ8NDV3 RNA5SP334-201ENST00000364825 118 ntBASIC7.31□□□□□ -1.24
SMC1BQ8NDV3 ZNF365-203ENST00000395249 433 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
SMC1BQ8NDV3 AC098592.2-201ENST00000413158 265 ntBASIC7.31□□□□□ -1.24
SMC1BQ8NDV3 AL034347.1-201ENST00000420766 835 ntTSL 3 BASIC7.31□□□□□ -1.24
SMC1BQ8NDV3 AC244394.2-201ENST00000425109 735 ntTSL 5 BASIC7.31□□□□□ -1.24
SMC1BQ8NDV3 MAGI2-AS1-201ENST00000428298 472 ntTSL 3 BASIC7.31□□□□□ -1.24
SMC1BQ8NDV3 GNGT1-202ENST00000428834 731 ntTSL 3 BASIC7.31□□□□□ -1.24
SMC1BQ8NDV3 MTCO1P45-201ENST00000431457 267 ntBASIC7.31□□□□□ -1.24
SMC1BQ8NDV3 MRPL50P1-201ENST00000431951 384 ntBASIC7.31□□□□□ -1.24
SMC1BQ8NDV3 AC011242.1-201ENST00000433596 1158 ntBASIC7.31□□□□□ -1.24
SMC1BQ8NDV3 CYCSP51-201ENST00000443545 318 ntBASIC7.31□□□□□ -1.24
SMC1BQ8NDV3 CLRN1-AS1-201ENST00000465576 2045 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
SMC1BQ8NDV3 RPL7P39-201ENST00000481157 744 ntBASIC7.31□□□□□ -1.24
SMC1BQ8NDV3 RPSAP50-201ENST00000481955 852 ntBASIC7.31□□□□□ -1.24
SMC1BQ8NDV3 AC016687.1-201ENST00000482574 353 ntBASIC7.31□□□□□ -1.24
SMC1BQ8NDV3 AC021192.1-201ENST00000510169 791 ntTSL 3 BASIC7.31□□□□□ -1.24
SMC1BQ8NDV3 CENPK-210ENST00000510354 1124 ntTSL 5 BASIC7.31□□□□□ -1.24
SMC1BQ8NDV3 ADAM7-204ENST00000520720 1870 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
SMC1BQ8NDV3 SCAPER-203ENST00000538941 4853 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
SMC1BQ8NDV3 PPIAL4F-202ENST00000581138 660 ntAPPRIS P1 BASIC7.31□□□□□ -1.24
SMC1BQ8NDV3 PPIAL4E-201ENST00000581164 785 ntAPPRIS P1 BASIC7.31□□□□□ -1.24
SMC1BQ8NDV3 AC091151.1-201ENST00000587369 726 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
SMC1BQ8NDV3 Z98949.1-228ENST00000595093 798 ntTSL 5 BASIC7.31□□□□□ -1.24
SMC1BQ8NDV3 Z98949.1-202ENST00000600211 1282 ntTSL 5 BASIC7.31□□□□□ -1.24
SMC1BQ8NDV3 HCG18-243ENST00000602498 327 ntTSL 3 BASIC7.31□□□□□ -1.24
SMC1BQ8NDV3 AC034236.3-201ENST00000605999 461 ntBASIC7.31□□□□□ -1.24
SMC1BQ8NDV3 AC007683.2-201ENST00000624681 714 ntBASIC7.31□□□□□ -1.24
SMC1BQ8NDV3 AP003485.1-201ENST00000625093 753 ntBASIC7.31□□□□□ -1.24
SMC1BQ8NDV3 OR4G3P-201ENST00000633500 913 ntBASIC7.31□□□□□ -1.24
SMC1BQ8NDV3 AC183089.2-201ENST00000637931 916 ntBASIC7.31□□□□□ -1.24
SMC1BQ8NDV3 TBX15-201ENST00000207157 3492 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
SMC1BQ8NDV3 TCL6-203ENST00000459662 3307 ntTSL 2 BASIC7.31□□□□□ -1.24
SMC1BQ8NDV3 ZNF214-204ENST00000536068 2562 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
SMC1BQ8NDV3 KCNAB1-212ENST00000490337 3122 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
SMC1BQ8NDV3 FAR2-201ENST00000182377 2095 ntAPPRIS P1 TSL 1 (best) BASIC7.31□□□□□ -1.24
SMC1BQ8NDV3 ZNF540-201ENST00000316433 3099 ntAPPRIS P3 TSL 1 (best) BASIC7.31□□□□□ -1.24
SMC1BQ8NDV3 CNTNAP4-209ENST00000622250 3783 ntTSL 1 (best) BASIC7.31□□□□□ -1.24
SMC1BQ8NDV3 CYP3A5-202ENST00000339843 3320 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
SMC1BQ8NDV3 MAPK10-287ENST00000641217 3037 ntBASIC7.3□□□□□ -1.24
SMC1BQ8NDV3 GNL2P1-201ENST00000451274 2190 ntBASIC7.3□□□□□ -1.24
SMC1BQ8NDV3 TOR1AIP2-201ENST00000367612 7905 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
SMC1BQ8NDV3 AL133284.1-201ENST00000423715 4996 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
SMC1BQ8NDV3 NUMB-201ENST00000355058 3342 ntAPPRIS ALT1 TSL 5 BASIC7.3□□□□□ -1.24
SMC1BQ8NDV3 OR4S2-201ENST00000312422 936 ntAPPRIS P1 BASIC7.3□□□□□ -1.24
SMC1BQ8NDV3 MIR365B-201ENST00000362317 111 ntBASIC7.3□□□□□ -1.24
SMC1BQ8NDV3 AC005042.1-201ENST00000393397 800 ntBASIC7.3□□□□□ -1.24
SMC1BQ8NDV3 AC012499.1-201ENST00000412133 741 ntTSL 5 BASIC7.3□□□□□ -1.24
SMC1BQ8NDV3 LINC01740-201ENST00000423842 332 ntTSL 2 BASIC7.3□□□□□ -1.24
SMC1BQ8NDV3 AL138789.1-201ENST00000425820 960 ntTSL 2 BASIC7.3□□□□□ -1.24
SMC1BQ8NDV3 AC126120.1-201ENST00000431082 470 ntBASIC7.3□□□□□ -1.24
SMC1BQ8NDV3 MTND2P21-201ENST00000436242 1042 ntBASIC7.3□□□□□ -1.24
SMC1BQ8NDV3 HMGN1P5-201ENST00000448591 263 ntBASIC7.3□□□□□ -1.24
SMC1BQ8NDV3 RPL7P61-201ENST00000451721 751 ntBASIC7.3□□□□□ -1.24
SMC1BQ8NDV3 AC074286.1-201ENST00000452002 544 ntTSL 4 BASIC7.3□□□□□ -1.24
SMC1BQ8NDV3 AC007370.1-201ENST00000503163 316 ntTSL 2 BASIC7.3□□□□□ -1.24
SMC1BQ8NDV3 AC024558.1-201ENST00000505008 528 ntBASIC7.3□□□□□ -1.24
SMC1BQ8NDV3 LINC02483-201ENST00000512043 1143 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
SMC1BQ8NDV3 AC093599.1-201ENST00000515232 562 ntTSL 4 BASIC7.3□□□□□ -1.24
SMC1BQ8NDV3 SNORA43.3-201ENST00000517240 103 ntBASIC7.3□□□□□ -1.24
SMC1BQ8NDV3 AC090155.1-201ENST00000520800 407 ntTSL 3 BASIC7.3□□□□□ -1.24
SMC1BQ8NDV3 AC073862.1-201ENST00000537998 409 ntTSL 3 BASIC7.3□□□□□ -1.24
SMC1BQ8NDV3 ATF7IP2-206ENST00000543967 998 ntTSL 2 BASIC7.3□□□□□ -1.24
SMC1BQ8NDV3 IGBP1P1-201ENST00000554337 1009 ntBASIC7.3□□□□□ -1.24
SMC1BQ8NDV3 AL161804.1-201ENST00000555600 708 ntTSL 3 BASIC7.3□□□□□ -1.24
SMC1BQ8NDV3 AC006530.1-201ENST00000555980 571 ntBASIC7.3□□□□□ -1.24
SMC1BQ8NDV3 AC026992.1-201ENST00000558269 571 ntTSL 2 BASIC7.3□□□□□ -1.24
SMC1BQ8NDV3 AC090457.1-201ENST00000579775 211 ntTSL 3 BASIC7.3□□□□□ -1.24
SMC1BQ8NDV3 AC068313.1-201ENST00000604028 1008 ntBASIC7.3□□□□□ -1.24
SMC1BQ8NDV3 ZNF248-209ENST00000615949 518 ntTSL 5 BASIC7.3□□□□□ -1.24
SMC1BQ8NDV3 ZNF75A-210ENST00000617839 1225 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
SMC1BQ8NDV3 GXYLT1P5-202ENST00000618830 589 ntTSL 5 BASIC7.3□□□□□ -1.24
SMC1BQ8NDV3 AL356118.1-201ENST00000635272 1078 ntBASIC7.3□□□□□ -1.24
SMC1BQ8NDV3 NBPF12-205ENST00000617614 4630 ntTSL 5 BASIC7.3□□□□□ -1.24
SMC1BQ8NDV3 USP37-205ENST00000454775 5019 ntAPPRIS P1 TSL 2 BASIC7.3□□□□□ -1.24
SMC1BQ8NDV3 SGO1-AS1-205ENST00000634837 1677 ntTSL 5 BASIC7.3□□□□□ -1.24
SMC1BQ8NDV3 ZNF83-205ENST00000594682 2890 ntTSL 4 BASIC7.3□□□□□ -1.24
SMC1BQ8NDV3 PTPN3-202ENST00000374541 6703 ntAPPRIS P1 TSL 5 BASIC7.3□□□□□ -1.24
SMC1BQ8NDV3 AC132219.2-201ENST00000624416 2327 ntBASIC7.3□□□□□ -1.24
SMC1BQ8NDV3 DDX1-208ENST00000621973 2183 ntTSL 5 BASIC7.3□□□□□ -1.24
SMC1BQ8NDV3 PDZK1P1-202ENST00000425209 1350 ntBASIC7.3□□□□□ -1.24
SMC1BQ8NDV3 MEF2C-202ENST00000424173 6336 ntAPPRIS P3 TSL 1 (best) BASIC7.3□□□□□ -1.24
SMC1BQ8NDV3 ERCC6L-202ENST00000373657 4344 ntAPPRIS ALT2 TSL 2 BASIC7.3□□□□□ -1.24
SMC1BQ8NDV3 MBNL1-204ENST00000324210 5465 ntAPPRIS ALT1 TSL 1 (best) BASIC7.3□□□□□ -1.24
SMC1BQ8NDV3 AC012254.3-201ENST00000591183 2117 ntBASIC7.3□□□□□ -1.24
SMC1BQ8NDV3 AC093010.2-202ENST00000493033 3023 ntTSL 2 BASIC7.3□□□□□ -1.24
SMC1BQ8NDV3 LRRC7-203ENST00000370958 2375 ntTSL 1 (best) BASIC7.3□□□□□ -1.24
SMC1BQ8NDV3 AL359195.2-201ENST00000623657 4412 ntBASIC7.3□□□□□ -1.24
SMC1BQ8NDV3 TANC2-202ENST00000424789 11721 ntAPPRIS P1 TSL 1 (best) BASIC7.3□□□□□ -1.24
SMC1BQ8NDV3 FABP2-201ENST00000274024 2478 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
SMC1BQ8NDV3 TMC1-201ENST00000297784 3201 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
SMC1BQ8NDV3 ZBTB21-205ENST00000398511 5608 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
SMC1BQ8NDV3 ZNF836-201ENST00000322146 2811 ntAPPRIS ALT2 TSL 5 BASIC7.29□□□□□ -1.24
SMC1BQ8NDV3 OR2T2-203ENST00000642130 3331 ntAPPRIS P1 BASIC7.29□□□□□ -1.24
SMC1BQ8NDV3 HTR2A-202ENST00000542664 5429 ntAPPRIS P1 TSL 1 (best) BASIC7.29□□□□□ -1.24
Retrieved 100 of 98,524 protein–RNA pairs in 72.7 ms